TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665525.2.1
(620 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA... 275 2e-072
gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) c... 115 8e-054
dbj|AP007223.2| Oryza sativa (japonica cultivar-group) geno... 115 3e-051
dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chro... 115 3e-051
dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chro... 115 6e-051
gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Ni... 195 4e-048
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-046
dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA... 162 4e-038
dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA... 162 4e-038
ref|XM_476102.1| Oryza sativa (japonica cultivar-group), p... 162 4e-038
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 115 4e-024
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 115 4e-024
>dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A01, full
insert sequence
Length = 1543
Score = 275 bits (596), Expect = 2e-072
Identities = 107/129 (82%), Positives = 112/129 (86%)
Frame = -2 / +2
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIY LRNNSFRMFS
Sbjct: 767 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFS 946
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKEC 260
DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSGLCHPEVKMLELH+RKEC
Sbjct: 947 NEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSGLCHPEVKMLELHRRKEC 1126
Query: 259 TGGPTVAAE 233
TGGP+ +E
Sbjct: 1127 TGGPSAVSE 1153
Score = 218 bits (471), Expect = 4e-055
Identities = 92/124 (74%), Positives = 100/124 (80%)
Frame = -1 / +1
Query: 620 HWMHEEGACFY*S*VEMV*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQFPYV* 441
HWMHEEGACFY* EMV*A IL RIRIL SCIWA+L FIS GG LGC EEQQFPYV
Sbjct: 766 HWMHEEGACFY*PKAEMV*ATILFARIRILPSCIWAHLRFISRCGGKLGCLEEQQFPYVQ 945
Query: 440 YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLRAMPPRGKNARASSKKRM 261
G Y WI+DACYERQP*EHTC L T*+H VF+CCLG+SKM RAMPP GK+A ASSK+ M
Sbjct: 946 Q*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFRAMPPGGKDAGASSKEGM 1125
Query: 260 HRWS 249
+RWS
Sbjct: 1126 YRWS 1137
Score = 215 bits (465), Expect = 3e-054
Identities = 91/132 (68%), Positives = 95/132 (71%)
Frame = +3 / -2
Query: 225 SDTSAATVGPPVHSFLXXXXXIFTSGWHSPEHFGMSQTATEDSVQSGSQSACVFSWLTFI 404
S S GPPVHSFL IFTSGWHSPEHFG+SQTA EDSV SG QSACVFSWLTFI
Sbjct: 1161 SSDSDTADGPPVHSFLR*SSSIFTSGWHSPEHFGISQTAIEDSVHSGEQSACVFSWLTFI 982
Query: 405 ASIHDPIVTS*ILNIRXXXXXXXXXXXXXXXXXXXIGPYA*RKYSDPSKKDWGSYHFNLG 584
ASI DPIVTS +LNIR +GPYA*RKYSDPSKKD GSYHF+ G
Sbjct: 981 ASIQDPIVTSSLLNIRKLLFLKATKLATTSADKA*MGPYA*RKYSDPSKKDCGSYHFSFG 802
Query: 585 SVKTGPFFMHPM 620
SVKTGPFFMHPM
Sbjct: 801 SVKTGPFFMHPM 766
Score = 215 bits (464), Expect = 4e-054
Identities = 92/124 (74%), Positives = 102/124 (82%)
Frame = +2 / -1
Query: 248 WTTCAFFSLMKL*HFYLWVA*P*AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNC 427
WTTC F MKL H YL VA*P* FWN+PNSN*RL A+R T+ MCVLMVDVHSKHP SN
Sbjct: 1138 WTTCTFLPSMKLQHLYLRVA*P*TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNS 959
Query: 428 NVLDTKHTETVVPQSNQASHHVS**SINWPICMKKVF*SE*EGLGLIPFQLRISKNRPLL 607
N+L +HTETVVPQ NQA HH+ **S+N PICMK+VF*SE +GL LIPFQL +SKNRPLL
Sbjct: 958 NILIAEHTETVVPQGNQACHHIG**SVNGPICMKEVF*SEQKGLWLIPFQLWVSKNRPLL 779
Query: 608 HASN 619
HASN
Sbjct: 778 HASN 767
Score = 202 bits (436), Expect = 3e-050
Identities = 92/125 (73%), Positives = 101/125 (80%)
Frame = +1 / -3
Query: 244 RLDHLCILFFDEALAFLPLGGIALSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQ 423
++DHL I FDEA A LP GGIAL+ILE PKQQLKT C+QV++ HVCSHG*RS*QAS IQ
Sbjct: 1142 QMDHLYIPSFDEAPASLPPGGIALNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ 963
Query: 424 L*RPRY*TYGNCCSSKQPS*PPRQLIKHKLAHMHEESILIRVRRIGAHTIST*DQ*KQAP 603
* P *TYGNCCSS+QPS PP +LIK K AHMHE SILIR +RI AHTIS Q*KQAP
Sbjct: 962 **HPHC*TYGNCCSSRQPSLPPHRLIKRKWAHMHEGSILIRAKRIVAHTISALGQ*KQAP 783
Query: 604 SSCIQ 618
SSCIQ
Sbjct: 782 SSCIQ 768
Score = 110 bits (235), Expect(2) = 2e-038
Identities = 49/69 (71%), Positives = 56/69 (81%)
Frame = -3 / +3
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQGYATQR*KC*SF 277
VSVC R L LD GCLL*TSTMRTHM V+L+A+SLQLLFG FQN QGYAT+R*+C SF
Sbjct: 930 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQGYATRR*RCWSF 1109
Query: 276 IKEKNAQVV 250
I+ +N QVV
Sbjct: 1110 IEGRNVQVV 1136
Score = 73.0 bits (153), Expect(2) = 2e-038
Identities = 33/41 (80%), Positives = 33/41 (80%)
Frame = -3 / +3
Query: 618 LDA*RRGLFLLILS*NGMSPNPSYSDQNTFFMHMGQFMLYQ 496
LDA*RRGLFLL S*NGMS NP SDQNT FMHMG F LYQ
Sbjct: 768 LDA*RRGLFLLTQS*NGMSHNPFCSDQNTSFMHMGPFTLYQ 890
>gb|AACV01013060.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013060, whole
genome shotgun sequence
Length = 20070
Score = 115 bits (246), Expect(4) = 8e-054
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / -2
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 7928 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 7779
Score = 96.4 bits (204), Expect(4) = 2e-044
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3 / +1
Query: 312 PEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIR 452
PEHFG+SQTA EDSV SG QSACVFSWLTFIASI DPIVTS +LNIR
Sbjct: 7780 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIR 7920
Score = 91.3 bits (193), Expect(4) = 2e-037
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -1 / -1
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLR 312
QFPYV G Y WI+DACYERQP*EHTC L T*+H VF+CCLG+SKM R
Sbjct: 7926 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 7780
Score = 85.4 bits (180), Expect(4) = 7e-036
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +2 / +3
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
* FWN+PNSN*RL A+R T+ MCVLMVDVHSKHP SN N+L +HTET
Sbjct: 7782 *TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 7925
Score = 80.3 bits (169), Expect(4) = 3e-026
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1 / +2
Query: 313 LSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGN 456
L+ILE PKQQLKT C+QV++ HVCSHG*RS*QAS IQ * P *TYGN
Sbjct: 7781 LNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 7924
Score = 78.5 bits (165), Expect(4) = 3e-026
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -3 / -3
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQ 313
VSVC R L LD GCLL*TSTMRTHM V+L+A+SLQLLFG FQN Q
Sbjct: 7924 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQ 7781
Score = 68.4 bits (143), Expect(4) = 2e-044
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +1 / +3
Query: 457 CCSSKQPS*PPRQLIKHKLAHMHEESILIRVRRIGAHT 570
CCSS+QPS PP +LIK K AHMHE SILIR +RI AHT
Sbjct: 8523 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAHT 8636
Score = 65.2 bits (136), Expect(4) = 7e-036
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +2 / +1
Query: 458 VVPQSNQASHHVS**SINWPICMKKVF*SE*EGLGLIP 571
VVPQ NQA HH+ **S+N PICMK+VF*SE +GL LIP
Sbjct: 8524 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLIP 8637
Score = 62.5 bits (130), Expect(4) = 8e-054
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2 / -2
Query: 313 GLCHPEVKMLELHQRKECTGGPTVAAE 233
GLCHPEVKMLELH+RKECTGGP+ +E
Sbjct: 7391 GLCHPEVKMLELHRRKECTGGPSAVSE 7311
Score = 61.1 bits (127), Expect(4) = 8e-054
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -2 / -1
Query: 568 YEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNN 458
YEPQSFLLGSEYFLHAYGPIY LRNN
Sbjct: 8634 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 8524
Score = 58.8 bits (122), Expect(4) = 2e-037
Identities = 28/38 (73%), Positives = 28/38 (73%)
Frame = -1 / -3
Query: 569 V*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQ 456
V*A IL RIRIL SCIWA L FIS GG LGC EEQQ
Sbjct: 8635 V*ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 8522
Score = 48.7 bits (100), Expect(4) = 8e-054
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -2 / -3
Query: 619 IGCMKKGPVFTDPKLKW 569
IGCMKKGPVFTDPKLKW
Sbjct: 10084 IGCMKKGPVFTDPKLKW 10034
Score = 47.8 bits (98), Expect(4) = 3e-026
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3 / +2
Query: 510 IGPYA*RKYSDPSKKDWGSY 569
IGPYA*RKYSDPSKKD GSY
Sbjct: 8576 IGPYA*RKYSDPSKKDCGSY 8635
Score = 47.8 bits (98), Expect(4) = 2e-044
Identities = 19/30 (63%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 225 SDTSAATVGPPVHSFLXXXXXIFTSGWHSP 314
S S GPPVHSFL IFTSGWHSP
Sbjct: 7303 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 7392
Score = 46.4 bits (95), Expect(4) = 3e-026
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = -3 / -2
Query: 570 GMSPNPSYSDQNTFFMHMGQFMLYQ 496
GMS NP SDQNT FMHMG F LYQ
Sbjct: 8636 GMSHNPFCSDQNTSFMHMGLFTLYQ 8562
Score = 43.7 bits (89), Expect(4) = 2e-044
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / +3
Query: 570 HFNLGSVKTGPFFMHPM 620
HF+ GSVKTGPFFMHPM
Sbjct: 10035 HFSFGSVKTGPFFMHPM 10085
Score = 41.4 bits (84), Expect(4) = 2e-037
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / -2
Query: 620 HWMHEEGACFY*S*VEMV 567
HWMHEEGACFY* EMV
Sbjct: 10085 HWMHEEGACFY*PKAEMV 10032
Score = 40.9 bits (83), Expect(4) = 2e-037
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -1 / -1
Query: 314 RAMPPRGKNARASSKKRMHRWS 249
RAMPP GK+A ASSK+ M+RWS
Sbjct: 7392 RAMPPGGKDAGASSKEGMYRWS 7327
Score = 39.1 bits (79), Expect(4) = 7e-036
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / +2
Query: 569 PFQLRISKNRPLLHASN 619
PFQL +SKNRPLLHASN
Sbjct: 10034 PFQLWVSKNRPLLHASN 10084
Score = 37.3 bits (75), Expect(4) = 3e-026
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -3 / -3
Query: 315 QGYATQR*KC*SFIKEKNAQVV 250
QGYAT+R*+C SFI+ +N QVV
Sbjct: 7393 QGYATRR*RCWSFIEGRNVQVV 7328
Score = 37.3 bits (75), Expect(4) = 7e-036
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2 / +3
Query: 248 WTTCAFFSLMKL*HFYLWVA*P 313
WTTC F MKL H YL VA*P
Sbjct: 7326 WTTCTFLPSMKLQHLYLRVA*P 7391
Score = 35.0 bits (70), Expect(4) = 3e-026
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 244 RLDHLCILFFDEALAFLPLGGIAL 315
++DHL I FDEA A LP GGIAL
Sbjct: 7322 QMDHLYIPSFDEAPASLPPGGIAL 7393
Score = 31.8 bits (63), Expect(4) = 3e-026
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3 / -1
Query: 618 LDA*RRGLFLLILS*NG 568
LDA*RRGLFLL S*NG
Sbjct: 10083 LDA*RRGLFLLTQS*NG 10033
Score = 30.9 bits (61), Expect(4) = 3e-026
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1 / +1
Query: 568 TIST*DQ*KQAPSSCIQ 618
TIS Q*KQAPSSCIQ
Sbjct: 10033 TISALGQ*KQAPSSCIQ 10083
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0046E09
Length = 146776
Score = 115 bits (246), Expect(4) = 3e-051
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / +3
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 65433 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 65582
Score = 96.4 bits (204), Expect(4) = 5e-042
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3 / -1
Query: 312 PEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIR 452
PEHFG+SQTA EDSV SG QSACVFSWLTFIASI DPIVTS +LNIR
Sbjct: 65581 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIR 65441
Score = 91.3 bits (193), Expect(4) = 5e-035
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -1 / +2
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLR 312
QFPYV G Y WI+DACYERQP*EHTC L T*+H VF+CCLG+SKM R
Sbjct: 65435 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 65581
Score = 85.4 bits (180), Expect(4) = 2e-033
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +2 / -3
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
* FWN+PNSN*RL A+R T+ MCVLMVDVHSKHP SN N+L +HTET
Sbjct: 65579 *TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 65436
Score = 80.3 bits (169), Expect(4) = 8e-024
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1 / -2
Query: 313 LSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGN 456
L+ILE PKQQLKT C+QV++ HVCSHG*RS*QAS IQ * P *TYGN
Sbjct: 65580 LNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 65437
Score = 78.5 bits (165), Expect(4) = 8e-024
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQ 313
VSVC R L LD GCLL*TSTMRTHM V+L+A+SLQLLFG FQN Q
Sbjct: 65437 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQ 65580
Score = 68.4 bits (143), Expect(4) = 5e-042
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +1 / -3
Query: 457 CCSSKQPS*PPRQLIKHKLAHMHEESILIRVRRIGAHT 570
CCSS+QPS PP +LIK K AHMHE SILIR +RI AHT
Sbjct: 64838 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAHT 64725
Score = 65.2 bits (136), Expect(4) = 2e-033
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +2 / -1
Query: 458 VVPQSNQASHHVS**SINWPICMKKVF*SE*EGLGLIP 571
VVPQ NQA HH+ **S+N PICMK+VF*SE +GL LIP
Sbjct: 64837 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLIP 64724
Score = 62.5 bits (130), Expect(4) = 3e-051
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2 / +3
Query: 313 GLCHPEVKMLELHQRKECTGGPTVAAE 233
GLCHPEVKMLELH+RKECTGGP+ +E
Sbjct: 65970 GLCHPEVKMLELHRRKECTGGPSAVSE 66050
Score = 61.1 bits (127), Expect(4) = 3e-051
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -2 / +2
Query: 568 YEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNN 458
YEPQSFLLGSEYFLHAYGPIY LRNN
Sbjct: 64727 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 64837
Score = 58.8 bits (122), Expect(4) = 5e-035
Identities = 28/38 (73%), Positives = 28/38 (73%)
Frame = -1 / +1
Query: 569 V*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQ 456
V*A IL RIRIL SCIWA L FIS GG LGC EEQQ
Sbjct: 64726 V*ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 64839
Score = 48.7 bits (100), Expect(4) = 3e-051
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKW 569
IGCMKKGPVFTDPKLKW
Sbjct: 63277 IGCMKKGPVFTDPKLKW 63327
Score = 47.8 bits (98), Expect(4) = 8e-024
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3 / -2
Query: 510 IGPYA*RKYSDPSKKDWGSY 569
IGPYA*RKYSDPSKKD GSY
Sbjct: 64785 IGPYA*RKYSDPSKKDCGSY 64726
Score = 47.8 bits (98), Expect(4) = 5e-042
Identities = 19/30 (63%), Positives = 19/30 (63%)
Frame = +3 / -1
Query: 225 SDTSAATVGPPVHSFLXXXXXIFTSGWHSP 314
S S GPPVHSFL IFTSGWHSP
Sbjct: 66058 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 65969
Score = 46.4 bits (95), Expect(4) = 8e-024
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = -3 / +3
Query: 570 GMSPNPSYSDQNTFFMHMGQFMLYQ 496
GMS NP SDQNT FMHMG F LYQ
Sbjct: 64725 GMSHNPFCSDQNTSFMHMGLFTLYQ 64799
Score = 43.7 bits (89), Expect(4) = 5e-042
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -3
Query: 570 HFNLGSVKTGPFFMHPM 620
HF+ GSVKTGPFFMHPM
Sbjct: 63326 HFSFGSVKTGPFFMHPM 63276
Score = 41.4 bits (84), Expect(4) = 5e-035
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / +3
Query: 620 HWMHEEGACFY*S*VEMV 567
HWMHEEGACFY* EMV
Sbjct: 63276 HWMHEEGACFY*PKAEMV 63329
Score = 40.9 bits (83), Expect(4) = 5e-035
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 314 RAMPPRGKNARASSKKRMHRWS 249
RAMPP GK+A ASSK+ M+RWS
Sbjct: 65969 RAMPPGGKDAGASSKEGMYRWS 66034
Score = 39.1 bits (79), Expect(4) = 2e-033
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / -2
Query: 569 PFQLRISKNRPLLHASN 619
PFQL +SKNRPLLHASN
Sbjct: 63327 PFQLWVSKNRPLLHASN 63277
Score = 37.3 bits (75), Expect(4) = 2e-033
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2 / -3
Query: 248 WTTCAFFSLMKL*HFYLWVA*P 313
WTTC F MKL H YL VA*P
Sbjct: 66035 WTTCTFLPSMKLQHLYLRVA*P 65970
Score = 37.3 bits (75), Expect(4) = 8e-024
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -3 / +1
Query: 315 QGYATQR*KC*SFIKEKNAQVV 250
QGYAT+R*+C SFI+ +N QVV
Sbjct: 65968 QGYATRR*RCWSFIEGRNVQVV 66033
Score = 35.0 bits (70), Expect(4) = 8e-024
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / -2
Query: 244 RLDHLCILFFDEALAFLPLGGIAL 315
++DHL I FDEA A LP GGIAL
Sbjct: 66039 QMDHLYIPSFDEAPASLPPGGIAL 65968
Score = 31.8 bits (63), Expect(4) = 8e-024
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3 / +2
Query: 618 LDA*RRGLFLLILS*NG 568
LDA*RRGLFLL S*NG
Sbjct: 63278 LDA*RRGLFLLTQS*NG 63328
Score = 30.9 bits (61), Expect(4) = 8e-024
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1 / -1
Query: 568 TIST*DQ*KQAPSSCIQ 618
TIS Q*KQAPSSCIQ
Sbjct: 63328 TISALGQ*KQAPSSCIQ 63278
>dbj|AP004239.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone OJ1115_C07, ***
SEQUENCING IN PROGRESS ***
Length = 153595
Score = 115 bits (246), Expect(4) = 3e-051
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / +3
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 120168 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 120317
Score = 96.4 bits (204), Expect(4) = 6e-042
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3 / -1
Query: 312 PEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIR 452
PEHFG+SQTA EDSV SG QSACVFSWLTFIASI DPIVTS +LNIR
Sbjct: 120316 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIR 120176
Score = 91.3 bits (193), Expect(4) = 6e-035
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -1 / +2
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLR 312
QFPYV G Y WI+DACYERQP*EHTC L T*+H VF+CCLG+SKM R
Sbjct: 120170 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 120316
Score = 85.4 bits (180), Expect(4) = 2e-033
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +2 / -3
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
* FWN+PNSN*RL A+R T+ MCVLMVDVHSKHP SN N+L +HTET
Sbjct: 120314 *TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 120171
Score = 80.3 bits (169), Expect(4) = 9e-024
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1 / -2
Query: 313 LSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGN 456
L+ILE PKQQLKT C+QV++ HVCSHG*RS*QAS IQ * P *TYGN
Sbjct: 120315 LNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 120172
Score = 78.5 bits (165), Expect(4) = 9e-024
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQ 313
VSVC R L LD GCLL*TSTMRTHM V+L+A+SLQLLFG FQN Q
Sbjct: 120172 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQ 120315
Score = 68.4 bits (143), Expect(4) = 6e-042
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +1 / -3
Query: 457 CCSSKQPS*PPRQLIKHKLAHMHEESILIRVRRIGAHT 570
CCSS+QPS PP +LIK K AHMHE SILIR +RI AHT
Sbjct: 119573 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAHT 119460
Score = 65.2 bits (136), Expect(4) = 2e-033
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +2 / -1
Query: 458 VVPQSNQASHHVS**SINWPICMKKVF*SE*EGLGLIP 571
VVPQ NQA HH+ **S+N PICMK+VF*SE +GL LIP
Sbjct: 119572 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLIP 119459
Score = 62.5 bits (130), Expect(4) = 3e-051
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2 / +3
Query: 313 GLCHPEVKMLELHQRKECTGGPTVAAE 233
GLCHPEVKMLELH+RKECTGGP+ +E
Sbjct: 120705 GLCHPEVKMLELHRRKECTGGPSAVSE 120785
Score = 61.1 bits (127), Expect(4) = 3e-051
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -2 / +2
Query: 568 YEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNN 458
YEPQSFLLGSEYFLHAYGPIY LRNN
Sbjct: 119462 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 119572
Score = 58.8 bits (122), Expect(4) = 6e-035
Identities = 28/38 (73%), Positives = 28/38 (73%)
Frame = -1 / +1
Query: 569 V*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQ 456
V*A IL RIRIL SCIWA L FIS GG LGC EEQQ
Sbjct: 119461 V*ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 119574
Score = 48.7 bits (100), Expect(4) = 3e-051
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKW 569
IGCMKKGPVFTDPKLKW
Sbjct: 118012 IGCMKKGPVFTDPKLKW 118062
Score = 47.8 bits (98), Expect(4) = 9e-024
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3 / -2
Query: 510 IGPYA*RKYSDPSKKDWGSY 569
IGPYA*RKYSDPSKKD GSY
Sbjct: 119520 IGPYA*RKYSDPSKKDCGSY 119461
Score = 47.8 bits (98), Expect(4) = 6e-042
Identities = 19/30 (63%), Positives = 19/30 (63%)
Frame = +3 / -1
Query: 225 SDTSAATVGPPVHSFLXXXXXIFTSGWHSP 314
S S GPPVHSFL IFTSGWHSP
Sbjct: 120793 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 120704
Score = 46.4 bits (95), Expect(4) = 9e-024
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = -3 / +3
Query: 570 GMSPNPSYSDQNTFFMHMGQFMLYQ 496
GMS NP SDQNT FMHMG F LYQ
Sbjct: 119460 GMSHNPFCSDQNTSFMHMGLFTLYQ 119534
Score = 43.7 bits (89), Expect(4) = 6e-042
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -3
Query: 570 HFNLGSVKTGPFFMHPM 620
HF+ GSVKTGPFFMHPM
Sbjct: 118061 HFSFGSVKTGPFFMHPM 118011
Score = 41.4 bits (84), Expect(4) = 6e-035
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / +3
Query: 620 HWMHEEGACFY*S*VEMV 567
HWMHEEGACFY* EMV
Sbjct: 118011 HWMHEEGACFY*PKAEMV 118064
Score = 40.9 bits (83), Expect(4) = 6e-035
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 314 RAMPPRGKNARASSKKRMHRWS 249
RAMPP GK+A ASSK+ M+RWS
Sbjct: 120704 RAMPPGGKDAGASSKEGMYRWS 120769
Score = 39.1 bits (79), Expect(4) = 2e-033
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / -2
Query: 569 PFQLRISKNRPLLHASN 619
PFQL +SKNRPLLHASN
Sbjct: 118062 PFQLWVSKNRPLLHASN 118012
Score = 37.3 bits (75), Expect(4) = 9e-024
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -3 / +1
Query: 315 QGYATQR*KC*SFIKEKNAQVV 250
QGYAT+R*+C SFI+ +N QVV
Sbjct: 120703 QGYATRR*RCWSFIEGRNVQVV 120768
Score = 37.3 bits (75), Expect(4) = 2e-033
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2 / -3
Query: 248 WTTCAFFSLMKL*HFYLWVA*P 313
WTTC F MKL H YL VA*P
Sbjct: 120770 WTTCTFLPSMKLQHLYLRVA*P 120705
Score = 35.0 bits (70), Expect(4) = 9e-024
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / -2
Query: 244 RLDHLCILFFDEALAFLPLGGIAL 315
++DHL I FDEA A LP GGIAL
Sbjct: 120774 QMDHLYIPSFDEAPASLPPGGIAL 120703
Score = 31.8 bits (63), Expect(4) = 9e-024
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3 / +2
Query: 618 LDA*RRGLFLLILS*NG 568
LDA*RRGLFLL S*NG
Sbjct: 118013 LDA*RRGLFLLTQS*NG 118063
Score = 30.9 bits (61), Expect(4) = 9e-024
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1 / -1
Query: 568 TIST*DQ*KQAPSSCIQ 618
TIS Q*KQAPSSCIQ
Sbjct: 118063 TISALGQ*KQAPSSCIQ 118013
>dbj|AP004844.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone B1160E02, ***
SEQUENCING IN PROGRESS ***
Length = 189953
Score = 115 bits (246), Expect(4) = 6e-051
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / +3
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 141726 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 141875
Score = 96.4 bits (204), Expect(4) = 1e-041
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3 / -2
Query: 312 PEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIR 452
PEHFG+SQTA EDSV SG QSACVFSWLTFIASI DPIVTS +LNIR
Sbjct: 141874 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIR 141734
Score = 91.3 bits (193), Expect(4) = 1e-034
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -1 / +2
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLR 312
QFPYV G Y WI+DACYERQP*EHTC L T*+H VF+CCLG+SKM R
Sbjct: 141728 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 141874
Score = 85.4 bits (180), Expect(4) = 4e-033
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +2 / -1
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
* FWN+PNSN*RL A+R T+ MCVLMVDVHSKHP SN N+L +HTET
Sbjct: 141872 *TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 141729
Score = 80.3 bits (169), Expect(4) = 2e-023
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1 / -3
Query: 313 LSILECPKQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGN 456
L+ILE PKQQLKT C+QV++ HVCSHG*RS*QAS IQ * P *TYGN
Sbjct: 141873 LNILEYPKQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGN 141730
Score = 78.5 bits (165), Expect(4) = 2e-023
Identities = 35/48 (72%), Positives = 38/48 (79%)
Frame = -3 / +1
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLFGTFQNAQ 313
VSVC R L LD GCLL*TSTMRTHM V+L+A+SLQLLFG FQN Q
Sbjct: 141730 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLFGIFQNVQ 141873
Score = 68.4 bits (143), Expect(4) = 1e-041
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +1 / -1
Query: 457 CCSSKQPS*PPRQLIKHKLAHMHEESILIRVRRIGAHT 570
CCSS+QPS PP +LIK K AHMHE SILIR +RI AHT
Sbjct: 141131 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAHT 141018
Score = 65.2 bits (136), Expect(4) = 4e-033
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +2 / -2
Query: 458 VVPQSNQASHHVS**SINWPICMKKVF*SE*EGLGLIP 571
VVPQ NQA HH+ **S+N PICMK+VF*SE +GL LIP
Sbjct: 141130 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLIP 141017
Score = 62.5 bits (130), Expect(4) = 6e-051
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2 / +3
Query: 313 GLCHPEVKMLELHQRKECTGGPTVAAE 233
GLCHPEVKMLELH+RKECTGGP+ +E
Sbjct: 142263 GLCHPEVKMLELHRRKECTGGPSAVSE 142343
Score = 61.1 bits (127), Expect(4) = 6e-051
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -2 / +2
Query: 568 YEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNN 458
YEPQSFLLGSEYFLHAYGPIY LRNN
Sbjct: 141020 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 141130
Score = 58.8 bits (122), Expect(4) = 1e-034
Identities = 28/38 (73%), Positives = 28/38 (73%)
Frame = -1 / +1
Query: 569 V*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQ 456
V*A IL RIRIL SCIWA L FIS GG LGC EEQQ
Sbjct: 141019 V*ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 141132
Score = 48.7 bits (100), Expect(4) = 6e-051
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKW 569
IGCMKKGPVFTDPKLKW
Sbjct: 139570 IGCMKKGPVFTDPKLKW 139620
Score = 47.8 bits (98), Expect(4) = 2e-023
Identities = 19/20 (95%), Positives = 19/20 (95%)
Frame = +3 / -3
Query: 510 IGPYA*RKYSDPSKKDWGSY 569
IGPYA*RKYSDPSKKD GSY
Sbjct: 141078 IGPYA*RKYSDPSKKDCGSY 141019
Score = 47.8 bits (98), Expect(4) = 1e-041
Identities = 19/30 (63%), Positives = 19/30 (63%)
Frame = +3 / -2
Query: 225 SDTSAATVGPPVHSFLXXXXXIFTSGWHSP 314
S S GPPVHSFL IFTSGWHSP
Sbjct: 142351 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 142262
Score = 46.4 bits (95), Expect(4) = 2e-023
Identities = 19/25 (76%), Positives = 19/25 (76%)
Frame = -3 / +3
Query: 570 GMSPNPSYSDQNTFFMHMGQFMLYQ 496
GMS NP SDQNT FMHMG F LYQ
Sbjct: 141018 GMSHNPFCSDQNTSFMHMGLFTLYQ 141092
Score = 43.7 bits (89), Expect(4) = 1e-041
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -1
Query: 570 HFNLGSVKTGPFFMHPM 620
HF+ GSVKTGPFFMHPM
Sbjct: 139619 HFSFGSVKTGPFFMHPM 139569
Score = 41.4 bits (84), Expect(4) = 1e-034
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / +3
Query: 620 HWMHEEGACFY*S*VEMV 567
HWMHEEGACFY* EMV
Sbjct: 139569 HWMHEEGACFY*PKAEMV 139622
Score = 40.9 bits (83), Expect(4) = 1e-034
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -1 / +2
Query: 314 RAMPPRGKNARASSKKRMHRWS 249
RAMPP GK+A ASSK+ M+RWS
Sbjct: 142262 RAMPPGGKDAGASSKEGMYRWS 142327
Score = 39.1 bits (79), Expect(4) = 4e-033
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / -3
Query: 569 PFQLRISKNRPLLHASN 619
PFQL +SKNRPLLHASN
Sbjct: 139620 PFQLWVSKNRPLLHASN 139570
Score = 37.3 bits (75), Expect(4) = 2e-023
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -3 / +1
Query: 315 QGYATQR*KC*SFIKEKNAQVV 250
QGYAT+R*+C SFI+ +N QVV
Sbjct: 142261 QGYATRR*RCWSFIEGRNVQVV 142326
Score = 37.3 bits (75), Expect(4) = 4e-033
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 248 WTTCAFFSLMKL*HFYLWVA*P 313
WTTC F MKL H YL VA*P
Sbjct: 142328 WTTCTFLPSMKLQHLYLRVA*P 142263
Score = 35.0 bits (70), Expect(4) = 2e-023
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / -3
Query: 244 RLDHLCILFFDEALAFLPLGGIAL 315
++DHL I FDEA A LP GGIAL
Sbjct: 142332 QMDHLYIPSFDEAPASLPPGGIAL 142261
Score = 31.8 bits (63), Expect(4) = 2e-023
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3 / +2
Query: 618 LDA*RRGLFLLILS*NG 568
LDA*RRGLFLL S*NG
Sbjct: 139571 LDA*RRGLFLLTQS*NG 139621
Score = 30.9 bits (61), Expect(4) = 2e-023
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1 / -2
Query: 568 TIST*DQ*KQAPSSCIQ 618
TIS Q*KQAPSSCIQ
Sbjct: 139621 TISALGQ*KQAPSSCIQ 139571
>gb|AU055721.1|AU055721 AU055721 Oryza sativa mature leaf Nipponbare Oryza sativa (japonica
cultivar-group) cDNA clone S20018_1A, mRNA sequence
Length = 352
Score = 195 bits (420), Expect = 4e-048
Identities = 78/95 (82%), Positives = 80/95 (84%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIY LRNNSFRMFS
Sbjct: 67 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNNSFRMFS 246
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAV 335
DVTIGSWMLAMNVNHENTHALC P+CTESS+AV
Sbjct: 247 NEDVTIGSWMLAMNVNHENTHALCSPECTESSIAV 351
Score = 167 bits (359), Expect = 1e-039
Identities = 71/95 (74%), Positives = 74/95 (77%)
Frame = -1 / +3
Query: 620 HWMHEEGACFY*S*VEMV*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQFPYV* 441
HWMHEEGACFY* EMV*A IL RIRIL SCIWA L FIS GG LGC EEQQFPYV
Sbjct: 66 HWMHEEGACFY*PKAEMV*ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQFPYVQ 245
Query: 440 YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCC 336
G Y WI+DACYERQP*EHTC L T*+H VF+CC
Sbjct: 246 Q*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCC 350
Score = 165 bits (354), Expect = 5e-039
Identities = 72/95 (75%), Positives = 81/95 (85%)
Frame = +2 / -2
Query: 335 NSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTETVVPQSNQASHHVS**SINW 514
NSN*RL A+R T+ MCVLMVDVHSKHP SN N+L +HTETVVPQ NQA HH+ **S+N
Sbjct: 351 NSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTETVVPQGNQACHHIG**SVNR 172
Query: 515 PICMKKVF*SE*EGLGLIPFQLRISKNRPLLHASN 619
PICMK+VF*SE +GL LIPFQL +SKNRPLLHASN
Sbjct: 171 PICMKEVF*SEQKGLWLIPFQLWVSKNRPLLHASN 67
Score = 160 bits (345), Expect = 9e-038
Identities = 72/95 (75%), Positives = 78/95 (82%)
Frame = +1 / -1
Query: 334 KQQLKTPCSQVHRAHVCSHG*RS*QASTIQL*RPRY*TYGNCCSSKQPS*PPRQLIKHKL 513
KQQLKT C+QV++ HVCSHG*RS*QAS IQ * P *TYGNCCSS+QPS PP +LIK K
Sbjct: 352 KQQLKTLCTQVNKVHVCSHG*RS*QASRIQ**HPHC*TYGNCCSSRQPSLPPHRLIKRK* 173
Query: 514 AHMHEESILIRVRRIGAHTIST*DQ*KQAPSSCIQ 618
AHMHE SILIR +RI AHTIS Q*KQAPSSCIQ
Sbjct: 172 AHMHEGSILIRAKRIVAHTISALGQ*KQAPSSCIQ 68
Score = 156 bits (335), Expect = 2e-036
Identities = 67/95 (70%), Positives = 69/95 (72%)
Frame = +3 / -3
Query: 336 TATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIRXXXXXXXXXXXXXXXXXXXIG 515
TA EDSV SG QSACVFSWLTFIASI DPIVTS +LNIR IG
Sbjct: 350 TAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIRKLLFLKATKLATTSADKA*IG 171
Query: 516 PYA*RKYSDPSKKDWGSYHFNLGSVKTGPFFMHPM 620
PYA*RKYSDPSKKD GSYHF+ GSVKTGPFFMHPM
Sbjct: 170 PYA*RKYSDPSKKDCGSYHFSFGSVKTGPFFMHPM 66
Score = 72.5 bits (152), Expect(2) = 3e-025
Identities = 33/41 (80%), Positives = 33/41 (80%)
Frame = -3 / +2
Query: 618 LDA*RRGLFLLILS*NGMSPNPSYSDQNTFFMHMGQFMLYQ 496
LDA*RRGLFLL S*NGMS NP SDQNT FMHMG F LYQ
Sbjct: 68 LDA*RRGLFLLTQS*NGMSHNPFCSDQNTSFMHMGLFTLYQ 190
Score = 66.1 bits (138), Expect(2) = 3e-025
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = -3 / +2
Query: 456 VSVCLVSRTLQLDRGCLL*TSTMRTHMRSVNLTARSLQLLF 334
VSVC R L LD GCLL*TSTMRTHM V+L+A+SLQLLF
Sbjct: 230 VSVCSAMRMLLLDPGCLL*TSTMRTHMHFVHLSAQSLQLLF 352
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 115 bits (246), Expect(4) = 4e-046
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / +1
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 2800195 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 2800344
Score = 96.4 bits (204), Expect(4) = 7e-037
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +3 / -2
Query: 312 PEHFGMSQTATEDSVQSGSQSACVFSWLTFIASIHDPIVTS*ILNIR 452
PEHFG+SQTA EDSV SG QSACVFSWLTFIASI DPIVTS +LNIR
Sbjct: 2800343 PEHFGISQTAIEDSVHSGEQSACVFSWLTFIASIQDPIVTSSLLNIR 2800203
Score = 91.3 bits (193), Expect(4) = 6e-030
Identities = 36/49 (73%), Positives = 40/49 (81%)
Frame = -1 / +3
Query: 458 QFPYV*YLGRYNWIVDACYERQP*EHTCAL*T*LHGVFSCCLGHSKMLR 312
QFPYV G Y WI+DACYERQP*EHTC L T*+H VF+CCLG+SKM R
Sbjct: 2800197 QFPYVQQ*GCYYWILDACYERQP*EHTCTLFT*VHRVFNCCLGYSKMFR 2800343
Score = 85.4 bits (180), Expect(4) = 2e-028
Identities = 35/48 (72%), Positives = 40/48 (83%)
Frame = +2 / -1
Query: 314 *AFWNVPNSN*RLRAVRFTERMCVLMVDVHSKHPRSNCNVLDTKHTET 457
* FWN+PNSN*RL A+R T+ MCVLMVDVHSKHP SN N+L +HTET
Sbjct: 2800341 *TFWNIPNSN*RLCALR*TKCMCVLMVDVHSKHPGSNSNILIAEHTET 2800198
Score = 68.4 bits (143), Expect(4) = 7e-037
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +1 / -1
Query: 457 CCSSKQPS*PPRQLIKHKLAHMHEESILIRVRRIGAHT 570
CCSS+QPS PP +LIK K AHMHE SILIR +RI AHT
Sbjct: 2799600 CCSSRQPSLPPHRLIKRK*AHMHEGSILIRAKRIVAHT 2799487
Score = 65.2 bits (136), Expect(4) = 2e-028
Identities = 28/38 (73%), Positives = 32/38 (84%)
Frame = +2 / -2
Query: 458 VVPQSNQASHHVS**SINWPICMKKVF*SE*EGLGLIP 571
VVPQ NQA HH+ **S+N PICMK+VF*SE +GL LIP
Sbjct: 2799599 VVPQGNQACHHIG**SVNRPICMKEVF*SEQKGLWLIP 2799486
Score = 62.5 bits (130), Expect(4) = 4e-046
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = -2 / +1
Query: 313 GLCHPEVKMLELHQRKECTGGPTVAAE 233
GLCHPEVKMLELH+RKECTGGP+ +E
Sbjct: 2800732 GLCHPEVKMLELHRRKECTGGPSAVSE 2800812
Score = 61.1 bits (127), Expect(4) = 4e-046
Identities = 25/37 (67%), Positives = 25/37 (67%)
Frame = -2 / +3
Query: 568 YEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNN 458
YEPQSFLLGSEYFLHAYGPIY LRNN
Sbjct: 2799489 YEPQSFLLGSEYFLHAYGPIYALSADVVASLVALRNN 2799599
Score = 58.8 bits (122), Expect(4) = 6e-030
Identities = 28/38 (73%), Positives = 28/38 (73%)
Frame = -1 / +2
Query: 569 V*APILLTRIRILSSCIWANLCFIS*RGG*LGCFEEQQ 456
V*A IL RIRIL SCIWA L FIS GG LGC EEQQ
Sbjct: 2799488 V*ATILFARIRILPSCIWAYLRFISRCGGKLGCLEEQQ 2799601
Score = 48.7 bits (100), Expect(4) = 4e-046
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -2 / +2
Query: 619 IGCMKKGPVFTDPKLKW 569
IGCMKKGPVFTDPKLKW
Sbjct: 2798039 IGCMKKGPVFTDPKLKW 2798089
Score = 47.8 bits (98), Expect(4) = 7e-037
Identities = 19/30 (63%), Positives = 19/30 (63%)
Frame = +3 / -2
Query: 225 SDTSAATVGPPVHSFLXXXXXIFTSGWHSP 314
S S GPPVHSFL IFTSGWHSP
Sbjct: 2800820 SSDSDTADGPPVHSFLR*SSSIFTSGWHSP 2800731
Score = 43.7 bits (89), Expect(4) = 7e-037
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +3 / -1
Query: 570 HFNLGSVKTGPFFMHPM 620
HF+ GSVKTGPFFMHPM
Sbjct: 2798088 HFSFGSVKTGPFFMHPM 2798038
Score = 41.4 bits (84), Expect(4) = 6e-030
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = -1 / +1
Query: 620 HWMHEEGACFY*S*VEMV 567
HWMHEEGACFY* EMV
Sbjct: 2798038 HWMHEEGACFY*PKAEMV 2798091
Score = 40.9 bits (83), Expect(4) = 6e-030
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = -1 / +3
Query: 314 RAMPPRGKNARASSKKRMHRWS 249
RAMPP GK+A ASSK+ M+RWS
Sbjct: 2800731 RAMPPGGKDAGASSKEGMYRWS 2800796
Score = 39.1 bits (79), Expect(4) = 2e-028
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +2 / -3
Query: 569 PFQLRISKNRPLLHASN 619
PFQL +SKNRPLLHASN
Sbjct: 2798089 PFQLWVSKNRPLLHASN 2798039
Score = 37.3 bits (75), Expect(4) = 2e-028
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 248 WTTCAFFSLMKL*HFYLWVA*P 313
WTTC F MKL H YL VA*P
Sbjct: 2800797 WTTCTFLPSMKLQHLYLRVA*P 2800732
>dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C10, full
insert sequence
Length = 1770
Score = 162 bits (348), Expect = 4e-038
Identities = 65/132 (49%), Positives = 79/132 (59%)
Frame = -2 / +3
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPV DP +KWYE LLG+EYF HA G +Y N+S RMF
Sbjct: 894 IGCMKKGPVVNDPNMKWYESSWELLGNEYFSHASGLLYALSSEVVGSLAATNNDSLRMFD 1073
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKEC 260
DVTIGSWMLAMNV HE+ A+C+ CT +S+AVWD KCS C+ + LH C
Sbjct: 1074 YEDVTIGSWMLAMNVKHEDNRAMCDSACTPTSIAVWDSKKCSNSCNTTEIVKALHNTTLC 1253
Query: 259 TGGPTVAAEVSE 224
+ PT+ EV +
Sbjct: 1254 SKSPTLPPEVED 1289
>dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G12, full
insert sequence
Length = 1621
Score = 162 bits (348), Expect = 4e-038
Identities = 65/132 (49%), Positives = 79/132 (59%)
Frame = -2 / +3
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPV DP +KWYE LLG+EYF HA G +Y N+S RMF
Sbjct: 894 IGCMKKGPVVNDPNMKWYESSWELLGNEYFSHASGLLYALSSEVVGSLAATNNDSLRMFD 1073
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKEC 260
DVTIGSWMLAMNV HE+ A+C+ CT +S+AVWD KCS C+ + LH C
Sbjct: 1074 YEDVTIGSWMLAMNVKHEDNRAMCDSACTPTSIAVWDSKKCSNSCNTTEIVKALHNTTLC 1253
Query: 259 TGGPTVAAEVSE 224
+ PT+ EV +
Sbjct: 1254 SKSPTLPPEVED 1289
>ref|XM_476102.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1173
Score = 162 bits (348), Expect = 4e-038
Identities = 65/132 (49%), Positives = 79/132 (59%)
Frame = -2 / +1
Query: 619 IGCMKKGPVFTDPKLKWYEPQSFLLGSEYFLHAYGPIYXXXXXXXXXXXXLRNNSFRMFS 440
IGCMKKGPV DP +KWYE LLG+EYF HA G +Y N+S RMF
Sbjct: 772 IGCMKKGPVVNDPNMKWYESSWELLGNEYFSHASGLLYALSSEVVGSLAATNNDSLRMFD 951
Query: 439 I*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSGLCHPEVKMLELHQRKEC 260
DVTIGSWMLAMNV HE+ A+C+ CT +S+AVWD KCS C+ + LH C
Sbjct: 952 YEDVTIGSWMLAMNVKHEDNRAMCDSACTPTSIAVWDSKKCSNSCNTTEIVKALHNTTLC 1131
Query: 259 TGGPTVAAEVSE 224
+ PT+ EV +
Sbjct: 1132 SKSPTLPPEVED 1167
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 115 bits (246), Expect = 4e-024
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / +1
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 2800195 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 2800344
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 115 bits (246), Expect = 4e-024
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2 / +3
Query: 460 NSFRMFSI*DVTIGSWMLAMNVNHENTHALCEPDCTESSVAVWDIPKCSG 311
+SFRMFS DVTIGSWMLAMNVNHENTHALC P+CTESS+AVWDIPKCSG
Sbjct: 2905287 SSFRMFSNEDVTIGSWMLAMNVNHENTHALCSPECTESSIAVWDIPKCSG 2905436
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,544,741,645
Number of Sequences: 438736
Number of extensions: 70634826
Number of successful extensions: 308741
Number of sequences better than 1.0e-020: 17
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 134387939316
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)