TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.1
(656 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA... 99 7e-031
ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA 99 7e-031
gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) c... 59 6e-024
dbj|AP004039.3| Oryza sativa (japonica cultivar-group) geno... 59 1e-021
dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chro... 59 1e-021
ref|NT_107232.1| Oryza sativa (japonica cultivar-group) 56 6e-021
dbj|AP003724.2| Oryza sativa (japonica cultivar-group) geno... 56 6e-021
dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chro... 56 6e-021
gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) c... 56 7e-021
>dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148H12, full
insert sequence
Length = 1825
Score = 98.7 bits (209), Expect(2) = 7e-031
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = -3 / +3
Query: 651 APTIISQGNRFIAPPNIAAKVIPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 484
+PTI+SQGNR+IAPPNIAAK+I + YA E WKNW W ++ DLFMNGA F S GA
Sbjct: 1227 SPTILSQGNRYIAPPNIAAKLITRHYAPEWEWKNWAWRSDGDLFMNGAYFQASNGA 1394
Score = 82.6 bits (174), Expect(2) = 2e-022
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = +2 / -1
Query: 479 LGAPPDGLKMAPFMNRSSSVCHTQFFHTPSSA*GLGITLAAMFGGAMKRLPWLMMVG 649
L AP D K APFMNRS S H QFFH+ S A* L I+LAAM GGAM RLPWL MVG
Sbjct: 1399 LMAPLDAWK*APFMNRSPSERHAQFFHSHSGA*CLVISLAAMLGGAMYRLPWLRMVG 1229
Score = 59.3 bits (123), Expect(2) = 7e-031
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3 / +3
Query: 495 SGGAPKQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC* 373
+G ++V ++ VKPKPG+YV RLTRF+G LSC G+PC*
Sbjct: 1386 NGAINRKVKGSDMVKPKPGSYVRRLTRFAGALSCRPGEPC* 1508
Score = 47.3 bits (97), Expect(2) = 2e-022
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +2 / -1
Query: 374 QHGLPVQQDSGPEKRVSLVT*VPGLGFTHSLVSTCLGAPP 493
QHG P +Q+S P KRVSL+T* PGLG T S T L P
Sbjct: 1507 QHGSPGRQESAPAKRVSLLT*EPGLGLTMSEPFTFLLMAP 1388
>ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1825
Score = 98.7 bits (209), Expect(2) = 7e-031
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = -3 / +3
Query: 651 APTIISQGNRFIAPPNIAAKVIPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 484
+PTI+SQGNR+IAPPNIAAK+I + YA E WKNW W ++ DLFMNGA F S GA
Sbjct: 1227 SPTILSQGNRYIAPPNIAAKLITRHYAPEWEWKNWAWRSDGDLFMNGAYFQASNGA 1394
Score = 82.6 bits (174), Expect(2) = 2e-022
Identities = 39/57 (68%), Positives = 41/57 (71%)
Frame = +2 / -1
Query: 479 LGAPPDGLKMAPFMNRSSSVCHTQFFHTPSSA*GLGITLAAMFGGAMKRLPWLMMVG 649
L AP D K APFMNRS S H QFFH+ S A* L I+LAAM GGAM RLPWL MVG
Sbjct: 1399 LMAPLDAWK*APFMNRSPSERHAQFFHSHSGA*CLVISLAAMLGGAMYRLPWLRMVG 1229
Score = 59.3 bits (123), Expect(2) = 7e-031
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3 / +3
Query: 495 SGGAPKQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC* 373
+G ++V ++ VKPKPG+YV RLTRF+G LSC G+PC*
Sbjct: 1386 NGAINRKVKGSDMVKPKPGSYVRRLTRFAGALSCRPGEPC* 1508
Score = 47.3 bits (97), Expect(2) = 2e-022
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +2 / -1
Query: 374 QHGLPVQQDSGPEKRVSLVT*VPGLGFTHSLVSTCLGAPP 493
QHG P +Q+S P KRVSL+T* PGLG T S T L P
Sbjct: 1507 QHGSPGRQESAPAKRVSLLT*EPGLGLTMSEPFTFLLMAP 1388
>gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003607, whole
genome shotgun sequence
Length = 8977
Score = 59.3 bits (123), Expect(3) = 6e-024
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3 / +2
Query: 495 SGGAPKQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC* 373
+G ++V ++ VKPKPG+YV RLTRF+G LSC G+PC*
Sbjct: 8441 NGAINRKVKGSDMVKPKPGSYVRRLTRFAGALSCRPGEPC* 8563
Score = 55.6 bits (115), Expect(3) = 6e-024
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = -3 / +2
Query: 588 IPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 484
I + YA E WKNW W ++ DLFMNGA F S GA
Sbjct: 8345 ITRHYAPEWEWKNWAWRSDGDLFMNGAYFQASNGA 8449
Score = 47.3 bits (97), Expect(3) = 6e-024
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -3 / +3
Query: 651 APTIISQGNRFIAPPNIAAKVI 586
+PTI+SQGNR+IAPPNIAAK++
Sbjct: 7860 SPTILSQGNRYIAPPNIAAKLV 7925
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1006_D05
Length = 128178
Score = 59.3 bits (123), Expect(3) = 1e-021
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3 / -1
Query: 495 SGGAPKQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC* 373
+G ++V ++ VKPKPG+YV RLTRF+G LSC G+PC*
Sbjct: 40944 NGAINRKVKGSDMVKPKPGSYVRRLTRFAGALSCRPGEPC* 40822
Score = 55.6 bits (115), Expect(3) = 1e-021
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = -3 / -1
Query: 588 IPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 484
I + YA E WKNW W ++ DLFMNGA F S GA
Sbjct: 41040 ITRHYAPEWEWKNWAWRSDGDLFMNGAYFQASNGA 40936
Score = 47.3 bits (97), Expect(3) = 1e-021
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -3 / -2
Query: 651 APTIISQGNRFIAPPNIAAKVI 586
+PTI+SQGNR+IAPPNIAAK++
Sbjct: 41525 SPTILSQGNRYIAPPNIAAKLV 41460
>dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0542A02, ***
SEQUENCING IN PROGRESS ***
Length = 137445
Score = 59.3 bits (123), Expect(3) = 1e-021
Identities = 23/41 (56%), Positives = 31/41 (75%)
Frame = -3 / +3
Query: 495 SGGAPKQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC* 373
+G ++V ++ VKPKPG+YV RLTRF+G LSC G+PC*
Sbjct: 127356 NGAINRKVKGSDMVKPKPGSYVRRLTRFAGALSCRPGEPC* 127478
Score = 55.6 bits (115), Expect(3) = 1e-021
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = -3 / +3
Query: 588 IPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGA 484
I + YA E WKNW W ++ DLFMNGA F S GA
Sbjct: 127260 ITRHYAPEWEWKNWAWRSDGDLFMNGAYFQASNGA 127364
Score = 47.3 bits (97), Expect(3) = 1e-021
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = -3 / +1
Query: 651 APTIISQGNRFIAPPNIAAKVI 586
+PTI+SQGNR+IAPPNIAAK++
Sbjct: 126775 SPTILSQGNRYIAPPNIAAKLV 126840
>ref|NT_107232.1| Oryza sativa (japonica cultivar-group)
Length = 367211
Score = 56.1 bits (116), Expect(4) = 6e-021
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = -3 / +1
Query: 480 KQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC*RPVGIRL 352
KQ + +KPKPG+YV RLTRF+G + C GK C* G RL
Sbjct: 336295 KQFSNKDLIKPKPGSYVARLTRFAGFIPCTPGKKC*TARGGRL 336423
Score = 43.7 bits (89), Expect(4) = 6e-021
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / +3
Query: 648 PTIISQGNRFIAPPNIAAKVIPK 580
PTIISQGNR+ APPN+ AK I K
Sbjct: 336117 PTIISQGNRYTAPPNLTAKQITK 336185
Score = 36.3 bits (73), Expect(4) = 6e-021
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +1
Query: 543 WHTEDDLFMNGAIFNPSGGAPKQVDTNE 460
WH E+DLFM G F SG A ++ +N+
Sbjct: 336229 WHLEEDLFMEGTYFTTSGDATQKQFSNK 336312
Score = 22.6 bits (43), Expect(4) = 6e-021
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +3
Query: 573 AEEGVWKNWVW 541
A E WKNWV+
Sbjct: 336195 AAEEEWKNWVY 336227
>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0498C03
Length = 146394
Score = 56.1 bits (116), Expect(4) = 6e-021
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = -3 / +2
Query: 480 KQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC*RPVGIRL 352
KQ + +KPKPG+YV RLTRF+G + C GK C* G RL
Sbjct: 115478 KQFSNKDLIKPKPGSYVARLTRFAGFIPCTPGKKC*TARGGRL 115606
Score = 43.7 bits (89), Expect(4) = 6e-021
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / +1
Query: 648 PTIISQGNRFIAPPNIAAKVIPK 580
PTIISQGNR+ APPN+ AK I K
Sbjct: 115300 PTIISQGNRYTAPPNLTAKQITK 115368
Score = 36.3 bits (73), Expect(4) = 6e-021
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +2
Query: 543 WHTEDDLFMNGAIFNPSGGAPKQVDTNE 460
WH E+DLFM G F SG A ++ +N+
Sbjct: 115412 WHLEEDLFMEGTYFTTSGDATQKQFSNK 115495
Score = 22.6 bits (43), Expect(4) = 6e-021
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +1
Query: 573 AEEGVWKNWVW 541
A E WKNWV+
Sbjct: 115378 AAEEEWKNWVY 115410
>dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0507H07, ***
SEQUENCING IN PROGRESS ***
Length = 101786
Score = 56.1 bits (116), Expect(4) = 6e-021
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = -3 / -2
Query: 480 KQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC*RPVGIRL 352
KQ + +KPKPG+YV RLTRF+G + C GK C* G RL
Sbjct: 31675 KQFSNKDLIKPKPGSYVARLTRFAGFIPCTPGKKC*TARGGRL 31547
Score = 43.7 bits (89), Expect(4) = 6e-021
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / -1
Query: 648 PTIISQGNRFIAPPNIAAKVIPK 580
PTIISQGNR+ APPN+ AK I K
Sbjct: 31853 PTIISQGNRYTAPPNLTAKQITK 31785
Score = 36.3 bits (73), Expect(4) = 6e-021
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / -2
Query: 543 WHTEDDLFMNGAIFNPSGGAPKQVDTNE 460
WH E+DLFM G F SG A ++ +N+
Sbjct: 31741 WHLEEDLFMEGTYFTTSGDATQKQFSNK 31658
Score = 22.6 bits (43), Expect(4) = 6e-021
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / -1
Query: 573 AEEGVWKNWVW 541
A E WKNWV+
Sbjct: 31775 AAEEEWKNWVY 31743
>gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014424, whole
genome shotgun sequence
Length = 13752
Score = 56.1 bits (116), Expect(4) = 7e-021
Identities = 23/43 (53%), Positives = 28/43 (65%)
Frame = -3 / +2
Query: 480 KQVDTNEWVKPKPGTYVTRLTRFSGPLSCCTGKPC*RPVGIRL 352
KQ + +KPKPG+YV RLTRF+G + C GK C* G RL
Sbjct: 3701 KQFSNKDLIKPKPGSYVARLTRFAGFIPCTPGKKC*TARGGRL 3829
Score = 43.7 bits (89), Expect(4) = 7e-021
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3 / +1
Query: 648 PTIISQGNRFIAPPNIAAKVIPK 580
PTIISQGNR+ APPN+ AK I K
Sbjct: 3523 PTIISQGNRYTAPPNLTAKQITK 3591
Score = 36.3 bits (73), Expect(4) = 7e-021
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3 / +2
Query: 543 WHTEDDLFMNGAIFNPSGGAPKQVDTNE 460
WH E+DLFM G F SG A ++ +N+
Sbjct: 3635 WHLEEDLFMEGTYFTTSGDATQKQFSNK 3718
Score = 22.6 bits (43), Expect(4) = 7e-021
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -3 / +1
Query: 573 AEEGVWKNWVW 541
A E WKNWV+
Sbjct: 3601 AAEEEWKNWVY 3633
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,812,629,594
Number of Sequences: 438736
Number of extensions: 85295956
Number of successful extensions: 602453
Number of sequences better than 1.0e-020: 10
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 144306473079
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)