TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060522.1| Oryza sativa (japonica cultivar-group) cDNA... 316 2e-084
gb|AACV01008784.1| Oryza sativa (japonica cultivar-group) c... 111 5e-055
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 111 1e-050
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-043
ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Oz... 100 5e-036
gb|AU225857.1|AU225857 AU225857 Oryza sativa Koshihikari pi... 152 4e-035
gb|CA998829.1|CA998829 S345M_G02 Rice cold stress germinati... 150 2e-034
gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) c... 100 1e-032
dbj|AP002481.1| Oryza sativa (japonica cultivar-group) geno... 100 7e-030
gb|CA998828.1|CA998828 S345M_G01 Rice cold stress germinati... 96 1e-028
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 100 3e-025
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 100 4e-025
>dbj|AK060522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E03, full
insert sequence
Length = 1793
Score = 316 bits (684), Expect = 2e-084
Identities = 136/174 (78%), Positives = 148/174 (85%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRAAFIIASTASEEEMLRWYNE
Sbjct: 1101 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 1280
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNA 362
RVVW DKQLNLKLLRKGVLTRIYTPM IVQ LRESGVFTS+IAA Q VN K+S KE N
Sbjct: 1281 RVVWNDKQLNLKLLRKGVLTRIYTPMAIVQGLRESGVFTSSIAAAQSLVNDKVSLKENNV 1460
Query: 363 QSQNVTAPGNMTRVVRSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDEH 524
Q++N T ++R +S+AS RKIL AV+ A D+NV+AVPPLSPPSLD H
Sbjct: 1461 QNKNHTKLEKVSRKFIRANSQASARKILHAVEPASHDSNVSAVPPLSPPSLDNH 1622
Score = 278 bits (602), Expect = 5e-073
Identities = 130/172 (75%), Positives = 137/172 (79%)
Frame = -2 / -2
Query: 517 SKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFWLCALVSLGES 338
SKLGGD GGTA TL+S A STACSIFL DA E + L F V F L S E+
Sbjct: 1615 SKLGGDKGGTADTLLSWLAGSTACSIFLADA*ELALMNFLDTFSNFV*FLF*TLFSFNET 1436
Query: 337 LAFTAGWPAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSIS 158
L+FT+ W AAM EVKTPDSRR *TI IGVYMRVSTPFLRSF+ SCLS HTTRSLYQRSIS
Sbjct: 1435 LSFTSDWAAAMEEVKTPDSRRP*TIAIGVYMRVSTPFLRSFRLSCLSFHTTRSLYQRSIS 1256
Query: 157 SSLAVDAIIKAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
SSLAVDAII AALSKSNMKHL TSSFVGLHPQRSRLDVKSEN VYV*C+TAA
Sbjct: 1255 SSLAVDAIINAALSKSNMKHLFTSSFVGLHPQRSRLDVKSENFVYV*CKTAA 1100
Score = 236 bits (510), Expect = 2e-060
Identities = 107/180 (59%), Positives = 125/180 (69%)
Frame = -1 / -1
Query: 542 LFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA*CL*ISRSDHSCHVPRCGNILAL 363
L + V +QT QRWNS YI+I G++N +QY CL IS + S ++ I L
Sbjct: 1640 LAKLQEVIIQTRW*QRWNSRYITIMAGRLNSVQYFPGRCLRISSDEFSRYLF*FRMIFVL 1461
Query: 362 RIGFLG*EFGIHSRLASCNGGSEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDS 183
I FL + IH L SCNG SEDT TLNNCHWGVYASQHSFP+KL*++LLI PH+S
Sbjct: 1460 NIVFLQRDLVIHK*LGSCNGRSEDTRLT*TLNNCHWGVYASQHSFPEKL*IELLIIPHNS 1281
Query: 182 FIVPAKHFFFTSS*CNYKSCSVKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIMQNCS 3
FIVPAKHF FTSS*C+YK SVKI HE S +I FC ASTAITSRC +*KF VCI+QN S
Sbjct: 1280 FIVPAKHFLFTSS*CDYKCRSVKIQHEASFHIVFCGFASTAITSRC*V*KFCVCIVQNSS 1101
Score = 199 bits (429), Expect = 3e-049
Identities = 102/175 (58%), Positives = 114/175 (65%)
Frame = +1 / +1
Query: 1 RLQFCIIHTLNFQI*HLDVIAVDASLQKKMLRDVSC*ILTEXXXXXXXXXVKKKCFAGTM 180
RL FC IHT NFQ *HLDVIAVDA+ QK M +D SC ILTE VK+KCFAGTM
Sbjct: 1099 RLLFCTIHTQNFQT*HLDVIAVDANPQKTM*KDASCWILTERHL*SHQLLVKRKCFAGTM 1278
Query: 181 NESCGPISS*T*SF*GKEC*LAYTPQ*QLFRVCANPVSSLPPLQLANLL*MPNSHPRKPM 360
NE CG ISS *SF GKEC*LAYTPQ QLF+V + VSSL PLQL N L*M S RK M
Sbjct: 1279 NELCGMISSSI*SFSGKEC*LAYTPQWQLFKVYVSLVSSLLPLQLPNHL*MTRSR*RKTM 1458
Query: 361 RRAKMLPHLGT*QEWSDLLIQRHQAERYCKPLILPSAILM*LLFHRCRRPVWTNT 525
+ K++ + E S LI RH +YC L LP+ I+M LLFH C VW T
Sbjct: 1459 FKTKIIRN*KRYLENSSELILRHLPGKYCTLLSLPAMIVMYLLFHLCHHLVWIIT 1623
Score = 193 bits (417), Expect(2) = 4e-052
Identities = 86/126 (68%), Positives = 96/126 (76%)
Frame = +2 / +2
Query: 2 GCSSALYIH*IFRFDI*T*SLWMQAYKRRC*EMFHVRF*QSSFYNCINC**RRNASLVQ* 181
GC ALYIH IFR +I*T*SLWMQ +KRRC +M HV F*QS YN INC**R NASLVQ*
Sbjct: 1100 GCCFALYIHKIFRLNI*T*SLWMQTHKRRCEKMLHVGF*QSGIYNRINC**RGNASLVQ* 1279
Query: 182 TSRVDR*AAELKASEERSADSHIHPNDNCSESARIRCLHFRHCSWPTCCECQTLTQGNQC 361
TS V+ *AA+ KAS+ERSADSHIHPN NCS S + CLHF HCS P CE Q L +G QC
Sbjct: 1280 TSCVE**AAQSKASQERSADSHIHPNGNCSRST*VWCLHFFHCSCPITCE*QGLVEGKQC 1459
Query: 362 AEPKCY 379
++ K Y
Sbjct: 1460 SKQKSY 1477
Score = 89.0 bits (188), Expect(3) = 1e-029
Identities = 38/67 (56%), Positives = 42/67 (62%)
Frame = -3 / -3
Query: 360 HWFPWVRVWHSQQVGQLQWRK*RHRIRADSEQLSLGCICXXXXXXXXXXXXXAYRSTRLV 181
H FP R HSQ +GQLQW+K*RH+ D EQL LGCIC AY ST+LV
Sbjct: 1458 HCFPSTRPCHSQVIGQLQWKK*RHQTHVDLEQLPLGCICESALLS*EALD*AAYHSTQLV 1279
Query: 180 HCTSEAF 160
HCTSEAF
Sbjct: 1278 HCTSEAF 1258
Score = 52.8 bits (109), Expect(3) = 1e-029
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -3 / -3
Query: 108 T*NIS*HLLL*ACIHSDHV*MSNLKI*CMYNAELQP 1
T*+I H LL CIHSDHV*M +LKI CMY+A+ QP
Sbjct: 1206 T*SIFSHRLLWVCIHSDHV*MLSLKILCMYSAKQQP 1099
Score = 35.4 bits (71), Expect(2) = 4e-052
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2 / +2
Query: 416 *FKGIRQKDTASR*SCLQRY*CNCCSTVVAAQFG 517
*F GI Q++TA *+C *C CCST V FG
Sbjct: 1514 *FSGICQENTARC*ACQP***CICCSTFVTT*FG 1615
Score = 30.4 bits (60), Expect(3) = 1e-029
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -3 / -3
Query: 516 PNWAATTVEQQLH*YR*RQDQRLAVSFCLMPLN 418
PN T VEQQ+H Y Q Q+ AV MP N
Sbjct: 1614 PN*VVTKVEQQIHYYHGWQAQQRAVFSWQMPEN 1516
>gb|AACV01008784.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008784, whole
genome shotgun sequence
Length = 47465
Score = 111 bits (238), Expect(3) = 2e-036
Identities = 55/105 (52%), Positives = 69/105 (65%)
Frame = +3 / -1
Query: 210 NLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAPG 389
NL L + + + IVQ LRESGVFTS+IAA Q VN K+S KE N Q++N T
Sbjct: 38246 NLLLFTAYIYMYVLSY*AIVQGLRESGVFTSSIAAAQSLVNDKVSLKENNVQNKNHTKLE 38067
Query: 390 NMTRVVRSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDEH 524
++R +S+AS RKIL AV+ A D+NV+AVPPLSPPSLD H
Sbjct: 38066 KVSRKFIRANSQASARKILHAVEPASHDSNVSAVPPLSPPSLDNH 37932
Score = 104 bits (222), Expect(4) = 5e-053
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3 / -1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 41273 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRA 41151
Score = 100 bits (212), Expect(4) = 5e-055
Identities = 51/85 (60%), Positives = 56/85 (65%)
Frame = -2 / +1
Query: 517 SKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFWLCALVSLGES 338
SKLGGD GGTA TL+S A STACSIFL DA E + L F V F L S E+
Sbjct: 37939 SKLGGDKGGTADTLLSWLAGSTACSIFLADA*ELALMNFLDTFSNFV*FLF*TLFSFNET 38118
Query: 337 LAFTAGWPAAMAEVKTPDSRRL*TI 263
L+FT+ W AAM EVKTPDSRR *TI
Sbjct: 38119 LSFTSDWAAAMEEVKTPDSRRP*TI 38193
Score = 90.0 bits (190), Expect(4) = 5e-055
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = -2 / +1
Query: 124 ALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
ALSKSNMKHL TSSFVGLHPQRSRLDVKSEN VYV*C+TAA
Sbjct: 41152 ALSKSNMKHLFTSSFVGLHPQRSRLDVKSENFVYV*CKTAA 41274
Score = 83.5 bits (176), Expect(4) = 1e-040
Identities = 42/94 (44%), Positives = 52/94 (55%)
Frame = -1 / +3
Query: 542 LFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA*CL*ISRSDHSCHVPRCGNILAL 363
L + V +QT QRWNS YI+I G++N +QY CL IS + S ++ I L
Sbjct: 37914 LAKLQEVIIQTRW*QRWNSRYITIMAGRLNSVQYFPGRCLRISSDEFSRYLF*FRMIFVL 38093
Query: 362 RIGFLG*EFGIHSRLASCNGGSEDTGFAQTLNNC 261
I FL + IH L SCNG SEDT TLNNC
Sbjct: 38094 NIVFLQRDLVIHK*LGSCNGRSEDTRLT*TLNNC 38195
Score = 75.8 bits (159), Expect(4) = 5e-053
Identities = 42/88 (47%), Positives = 51/88 (57%)
Frame = +1 / -2
Query: 262 QLFRVCANPVSSLPPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSDLLIQRHQAER 441
QLF+V + VSSL PLQL N L*M S RK M + K++ + E S LI RH +
Sbjct: 38194 QLFKVYVSLVSSLLPLQLPNHL*MTRSR*RKTMFKTKIIRN*KRYLENSSELILRHLPGK 38015
Query: 442 YCKPLILPSAILM*LLFHRCRRPVWTNT 525
YC L LP+ I+M LLFH C VW T
Sbjct: 38014 YCTLLSLPAMIVMYLLFHLCHHLVWIIT 37931
Score = 70.3 bits (147), Expect(4) = 5e-053
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +3 / -2
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
YNERVVW DKQLNLKLLRKGVLTRIYTPM
Sbjct: 38377 YNERVVWNDKQLNLKLLRKGVLTRIYTPM 38291
Score = 69.3 bits (145), Expect(4) = 5e-055
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = -1 / +2
Query: 260 HWGVYASQHSFPQKL*VQLLIGPHDSFIVPAK 165
HWGVYASQHSFP+KL*++LLI PH+SFIVP K
Sbjct: 38291 HWGVYASQHSFPEKL*IELLIIPHNSFIVPTK 38386
Score = 69.3 bits (145), Expect(3) = 2e-036
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +2 / -3
Query: 2 GCSSALYIH*IFRFDI*T*SLWMQAYKRRC*EMFHVRF*QS 124
GC ALYIH IFR +I*T*SLWMQ +KRRC +M HV F*QS
Sbjct: 41274 GCCFALYIHKIFRLNI*T*SLWMQTHKRRCEKMLHVGF*QS 41152
Score = 67.0 bits (140), Expect(4) = 6e-031
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +1 / -2
Query: 1 RLQFCIIHTLNFQI*HLDVIAVDASLQKKMLRDVSC*ILTE 123
RL FC IHT NFQ *HLDVIAVDA+ QK M +D SC ILTE
Sbjct: 41275 RLLFCTIHTQNFQT*HLDVIAVDANPQKTM*KDASCWILTE 41153
Score = 65.2 bits (136), Expect(4) = 1e-040
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = -2 / +3
Query: 259 IGVYMRVSTPFLRSFKFSCLSVHTTRSLY 173
IGVYMRVSTPFLRSF+ SCLS HTTRSLY
Sbjct: 38292 IGVYMRVSTPFLRSFRLSCLSFHTTRSLY 38378
Score = 63.8 bits (133), Expect(4) = 1e-040
Identities = 28/40 (70%), Positives = 31/40 (77%)
Frame = -1 / +3
Query: 122 SVKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIMQNCS 3
SVKI HE S +I FC ASTAITSRC +*KF VCI+QN S
Sbjct: 41154 SVKIQHEASFHIVFCGFASTAITSRC*V*KFCVCIVQNSS 41273
Score = 57.0 bits (118), Expect(4) = 6e-031
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +2 / -3
Query: 263 NCSESARIRCLHFRHCSWPTCCECQTLTQGNQCAEPKCY 379
NCS S + CLHF HCS P CE Q L +G QC++ K Y
Sbjct: 38193 NCSRST*VWCLHFFHCSCPITCE*QGLVEGKQCSKQKSY 38077
Score = 56.1 bits (116), Expect(4) = 6e-031
Identities = 25/31 (80%), Positives = 25/31 (80%)
Frame = +1 / -3
Query: 166 FAGTMNESCGPISS*T*SF*GKEC*LAYTPQ 258
F GTMNE CG ISS *SF GKEC*LAYTPQ
Sbjct: 38385 FVGTMNELCGMISSSI*SFSGKEC*LAYTPQ 38293
Score = 40.0 bits (81), Expect(4) = 5e-053
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +3 / -2
Query: 114 FDRAAFIIASTASEEEMLRW 173
F AFIIASTASEEEMLRW
Sbjct: 39175 FATQAFIIASTASEEEMLRW 39116
Score = 38.2 bits (77), Expect(4) = 5e-055
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = -2 / +3
Query: 175 YQRSISSSLAVDAIIKAALSKSNMK 101
YQRSISSSLAVDAII A ++ + ++
Sbjct: 39114 YQRSISSSLAVDAIINACVANAEVR 39188
Score = 36.3 bits (73), Expect(4) = 1e-040
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1 / +2
Query: 176 VPAKHFFFTSS*CNYK 129
+PAKHF FTSS*C+YK
Sbjct: 39113 LPAKHFLFTSS*CDYK 39160
Score = 35.4 bits (71), Expect(4) = 6e-031
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2 / -3
Query: 416 *FKGIRQKDTASR*SCLQRY*CNCCSTVVAAQFG 517
*F GI Q++TA *+C *C CCST V FG
Sbjct: 38040 *FSGICQENTARC*ACQP***CICCSTFVTT*FG 37939
Score = 29.0 bits (57), Expect(3) = 2e-036
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +2 / -1
Query: 122 SSFYNCINC**RRNASLV 175
+ YN INC**R NASLV
Sbjct: 39167 TGIYNRINC**RGNASLV 39114
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022
genomic scaffold, whole genome shotgun sequence
Length = 1402826
Score = 111 bits (238), Expect(2) = 8e-034
Identities = 55/105 (52%), Positives = 69/105 (65%)
Frame = +3 / +3
Query: 210 NLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAPG 389
NL L + + + IVQ LRESGVFTS+IAA Q VN K+S KE N Q++N T
Sbjct: 918126 NLLLFTAYIYMYVLSY*AIVQGLRESGVFTSSIAAAQSLVNDKVSLKENNVQNKNHTKLE 918305
Query: 390 NMTRVVRSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDEH 524
++R +S+AS RKIL AV+ A D+NV+AVPPLSPPSLD H
Sbjct: 918306 KVSRKFIRANSQASARKILHAVEPASHDSNVSAVPPLSPPSLDNH 918440
Score = 104 bits (222), Expect(4) = 1e-048
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 915099 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRA 915221
Score = 100 bits (212), Expect(4) = 1e-050
Identities = 51/85 (60%), Positives = 56/85 (65%)
Frame = -2 / -2
Query: 517 SKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFWLCALVSLGES 338
SKLGGD GGTA TL+S A STACSIFL DA E + L F V F L S E+
Sbjct: 918433 SKLGGDKGGTADTLLSWLAGSTACSIFLADA*ELALMNFLDTFSNFV*FLF*TLFSFNET 918254
Query: 337 LAFTAGWPAAMAEVKTPDSRRL*TI 263
L+FT+ W AAM EVKTPDSRR *TI
Sbjct: 918253 LSFTSDWAAAMEEVKTPDSRRP*TI 918179
Score = 90.0 bits (190), Expect(4) = 1e-050
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = -2 / -2
Query: 124 ALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
ALSKSNMKHL TSSFVGLHPQRSRLDVKSEN VYV*C+TAA
Sbjct: 915220 ALSKSNMKHLFTSSFVGLHPQRSRLDVKSENFVYV*CKTAA 915098
Score = 83.5 bits (176), Expect(4) = 2e-036
Identities = 42/94 (44%), Positives = 52/94 (55%)
Frame = -1 / -1
Query: 542 LFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA*CL*ISRSDHSCHVPRCGNILAL 363
L + V +QT QRWNS YI+I G++N +QY CL IS + S ++ I L
Sbjct: 918458 LAKLQEVIIQTRW*QRWNSRYITIMAGRLNSVQYFPGRCLRISSDEFSRYLF*FRMIFVL 918279
Query: 362 RIGFLG*EFGIHSRLASCNGGSEDTGFAQTLNNC 261
I FL + IH L SCNG SEDT TLNNC
Sbjct: 918278 NIVFLQRDLVIHK*LGSCNGRSEDTRLT*TLNNC 918177
Score = 75.8 bits (159), Expect(4) = 1e-048
Identities = 42/88 (47%), Positives = 51/88 (57%)
Frame = +1 / +1
Query: 262 QLFRVCANPVSSLPPLQLANLL*MPNSHPRKPMRRAKMLPHLGT*QEWSDLLIQRHQAER 441
QLF+V + VSSL PLQL N L*M S RK M + K++ + E S LI RH +
Sbjct: 918178 QLFKVYVSLVSSLLPLQLPNHL*MTRSR*RKTMFKTKIIRN*KRYLENSSELILRHLPGK 918357
Query: 442 YCKPLILPSAILM*LLFHRCRRPVWTNT 525
YC L LP+ I+M LLFH C VW T
Sbjct: 918358 YCTLLSLPAMIVMYLLFHLCHHLVWIIT 918441
Score = 70.3 bits (147), Expect(4) = 1e-048
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +3 / +1
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
YNERVVW DKQLNLKLLRKGVLTRIYTPM
Sbjct: 917995 YNERVVWNDKQLNLKLLRKGVLTRIYTPM 918081
Score = 69.3 bits (145), Expect(2) = 8e-034
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +2 / +2
Query: 2 GCSSALYIH*IFRFDI*T*SLWMQAYKRRC*EMFHVRF*QS 124
GC ALYIH IFR +I*T*SLWMQ +KRRC +M HV F*QS
Sbjct: 915098 GCCFALYIHKIFRLNI*T*SLWMQTHKRRCEKMLHVGF*QS 915220
Score = 69.3 bits (145), Expect(4) = 1e-050
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = -1 / -3
Query: 260 HWGVYASQHSFPQKL*VQLLIGPHDSFIVPAK 165
HWGVYASQHSFP+KL*++LLI PH+SFIVP K
Sbjct: 918081 HWGVYASQHSFPEKL*IELLIIPHNSFIVPTK 917986
Score = 67.0 bits (140), Expect(4) = 1e-026
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +1 / +1
Query: 1 RLQFCIIHTLNFQI*HLDVIAVDASLQKKMLRDVSC*ILTE 123
RL FC IHT NFQ *HLDVIAVDA+ QK M +D SC ILTE
Sbjct: 915097 RLLFCTIHTQNFQT*HLDVIAVDANPQKTM*KDASCWILTE 915219
Score = 65.2 bits (136), Expect(4) = 2e-036
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = -2 / -1
Query: 259 IGVYMRVSTPFLRSFKFSCLSVHTTRSLY 173
IGVYMRVSTPFLRSF+ SCLS HTTRSLY
Sbjct: 918080 IGVYMRVSTPFLRSFRLSCLSFHTTRSLY 917994
Score = 63.8 bits (133), Expect(4) = 2e-036
Identities = 28/40 (70%), Positives = 31/40 (77%)
Frame = -1 / -1
Query: 122 SVKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIMQNCS 3
SVKI HE S +I FC ASTAITSRC +*KF VCI+QN S
Sbjct: 915218 SVKIQHEASFHIVFCGFASTAITSRC*V*KFCVCIVQNSS 915099
Score = 57.0 bits (118), Expect(4) = 1e-026
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = +2 / +2
Query: 263 NCSESARIRCLHFRHCSWPTCCECQTLTQGNQCAEPKCY 379
NCS S + CLHF HCS P CE Q L +G QC++ K Y
Sbjct: 918179 NCSRST*VWCLHFFHCSCPITCE*QGLVEGKQCSKQKSY 918295
Score = 56.1 bits (116), Expect(4) = 1e-026
Identities = 25/31 (80%), Positives = 25/31 (80%)
Frame = +1 / +2
Query: 166 FAGTMNESCGPISS*T*SF*GKEC*LAYTPQ 258
F GTMNE CG ISS *SF GKEC*LAYTPQ
Sbjct: 917987 FVGTMNELCGMISSSI*SFSGKEC*LAYTPQ 918079
Score = 40.0 bits (81), Expect(4) = 1e-048
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +3 / +1
Query: 114 FDRAAFIIASTASEEEMLRW 173
F AFIIASTASEEEMLRW
Sbjct: 917197 FATQAFIIASTASEEEMLRW 917256
Score = 38.2 bits (77), Expect(4) = 1e-050
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = -2 / -1
Query: 175 YQRSISSSLAVDAIIKAALSKSNMK 101
YQRSISSSLAVDAII A ++ + ++
Sbjct: 917258 YQRSISSSLAVDAIINACVANAEVR 917184
Score = 36.3 bits (73), Expect(4) = 2e-036
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -1 / -3
Query: 176 VPAKHFFFTSS*CNYK 129
+PAKHF FTSS*C+YK
Sbjct: 917259 LPAKHFLFTSS*CDYK 917212
Score = 35.4 bits (71), Expect(4) = 1e-026
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2 / +2
Query: 416 *FKGIRQKDTASR*SCLQRY*CNCCSTVVAAQFG 517
*F GI Q++TA *+C *C CCST V FG
Sbjct: 918332 *FSGICQENTARC*ACQP***CICCSTFVTT*FG 918433
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 111 bits (238), Expect(2) = 6e-043
Identities = 55/105 (52%), Positives = 69/105 (65%)
Frame = +3 / +3
Query: 210 NLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAPG 389
NL L + + + IVQ LRESGVFTS+IAA Q VN K+S KE N Q++N T
Sbjct: 5222025 NLLLFTAYIYMYVLSY*AIVQGLRESGVFTSSIAAAQSLVNDKVSLKENNVQNKNHTKLE 5222204
Query: 390 NMTRVVRSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDEH 524
++R +S+AS RKIL AV+ A D+NV+AVPPLSPPSLD H
Sbjct: 5222205 KVSRKFIRANSQASARKILHAVEPASHDSNVSAVPPLSPPSLDNH 5222339
Score = 104 bits (222), Expect(2) = 6e-043
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 5218998 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRA 5219120
>ref|NM_188637.1| Oryza sativa (japonica cultivar-group), Ozsa8240 predicted mRNA
Length = 1671
Score = 100 bits (212), Expect(4) = 5e-036
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR 122
AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR
Sbjct: 1117 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 1236
Score = 60.2 bits (125), Expect(4) = 5e-036
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +3 / +2
Query: 171 WYNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
W+ E V+W DK NLKLLRKGVLTRIY PM
Sbjct: 1238 WFREHVLWNDKDTNLKLLRKGVLTRIYAPM 1327
Score = 28.6 bits (56), Expect(4) = 5e-036
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3 / +1
Query: 264 IVQSLRESGVFTSAIAAGQPAVNAKLS 344
I++ L+ESGVFT+A+ + + K S
Sbjct: 1420 IIRGLKESGVFTTAVTSAKAHAKFKSS 1500
Score = 22.6 bits (43), Expect(4) = 5e-036
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3 / +1
Query: 459 LAFSDTNVTAVPPLSPP 509
L D A+PP+SPP
Sbjct: 1582 LEMVDAQEEAMPPMSPP 1632
>gb|AU225857.1|AU225857 AU225857 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0889, mRNA sequence
Length = 490
Score = 152 bits (327), Expect = 4e-035
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +3 / +1
Query: 69 CKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRI 248
CKPTKEDVKRCF+L+FDR AFIIASTA+EEEM W+ E V+W DK NLKLLRKGVLTRI
Sbjct: 16 CKPTKEDVKRCFILEFDRLAFIIASTATEEEMRNWFREHVLWNDKDTNLKLLRKGVLTRI 195
Query: 249 YTPMTIVQSLRESGVFTSAIAAGQ 320
Y PM I++ L+ESGVFT+A+ + +
Sbjct: 196 YAPMAIIRGLKESGVFTTAVTSAK 267
>gb|CA998829.1|CA998829 S345M_G02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 499
Score = 150 bits (322), Expect = 2e-034
Identities = 70/106 (66%), Positives = 80/106 (75%)
Frame = +3 / +1
Query: 207 LNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAP 386
LNLKLLRKGVLTRIYTPM IVQ LRESGVFTS IAA Q VN K+S KE N Q++N T
Sbjct: 1 LNLKLLRKGVLTRIYTPMAIVQGLRESGVFTSFIAAAQSLVNDKVSLKENNVQNKNHTKL 180
Query: 387 GNMTRVVRSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDEH 524
++R +S+AS RKIL AV+ A D+NV+AVPPLSPPSLD H
Sbjct: 181 EKVSRKFIRANSQASARKILHAVEPASHDSNVSAVPPLSPPSLDNH 318
Score = 135 bits (290), Expect = 5e-030
Identities = 66/102 (64%), Positives = 72/102 (70%)
Frame = -2 / -3
Query: 517 SKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFWLCALVSLGES 338
SKLGGD GGTA TL+S A STACSIFL DA E + L F V F L S E+
Sbjct: 311 SKLGGDKGGTADTLLSWLAGSTACSIFLADA*ELALMNFLDTFSNFV*FLF*TLFSFNET 132
Query: 337 LAFTAGWPAAMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFK 212
L+FT+ W AAM EVKTPDSRR *TI IGVYMRVSTPFLRSF+
Sbjct: 131 LSFTSDWAAAMKEVKTPDSRRP*TIAIGVYMRVSTPFLRSFR 6
Score = 121 bits (259), Expect = 9e-026
Identities = 56/112 (50%), Positives = 69/112 (61%)
Frame = -1 / -2
Query: 542 LFTMMPVFVQTGRRQRWNSSYISIAEGKINGLQYLSA*CL*ISRSDHSCHVPRCGNILAL 363
L + V +QT QRWNS YI+I G++N +QY CL IS + S ++ I L
Sbjct: 336 LAKLQEVIIQTRW*QRWNSRYITIMAGRLNSVQYFPGRCLRISSDEFSRYLF*FRMIFVL 157
Query: 362 RIGFLG*EFGIHSRLASCNGGSEDTGFAQTLNNCHWGVYASQHSFPQKL*VQ 207
I FL + IH L SCN SEDT TLNNCHWGVYASQHSFP+KL*++
Sbjct: 156 NIVFLQRDLVIHK*LGSCNERSEDTRLT*TLNNCHWGVYASQHSFPEKL*IE 1
Score = 91.3 bits (193), Expect(2) = 2e-021
Identities = 35/55 (63%), Positives = 40/55 (72%)
Frame = +2 / +3
Query: 215 KASEERSADSHIHPNDNCSESARIRCLHFRHCSWPTCCECQTLTQGNQCAEPKCY 379
KAS+ERSADSHIHPN NCS S + CLHF HCS P CE Q L +G QC++ K Y
Sbjct: 9 KASQERSADSHIHPNGNCSRST*VWCLHFFHCSCPITCE*QGLVEGKQCSKQKSY 173
Score = 35.4 bits (71), Expect(2) = 2e-021
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2 / +3
Query: 416 *FKGIRQKDTASR*SCLQRY*CNCCSTVVAAQFG 517
*F GI Q++TA *+C *C CCST V FG
Sbjct: 210 *FSGICQENTARC*ACQP***CICCSTFVTT*FG 311
>gb|AACV01000520.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000520, whole
genome shotgun sequence
Length = 15554
Score = 100 bits (212), Expect(4) = 1e-032
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3 / -3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR 122
AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR
Sbjct: 6381 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 6262
Score = 55.1 bits (114), Expect(4) = 1e-032
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +3 / -1
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
+ E V+W DK NLKLLRKGVLTRIY PM
Sbjct: 5864 FREHVLWNDKDTNLKLLRKGVLTRIYAPM 5778
Score = 32.7 bits (65), Expect(4) = 1e-032
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3 / -2
Query: 126 AFIIASTASEEEMLRW 173
AFIIASTA+EEEM W
Sbjct: 5998 AFIIASTATEEEMRNW 5951
Score = 28.6 bits (56), Expect(4) = 1e-032
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3 / -3
Query: 264 IVQSLRESGVFTSAIAAGQPAVNAKLS 344
I++ L+ESGVFT+A+ + + K S
Sbjct: 5685 IIRGLKESGVFTTAVTSAKAHAKFKSS 5605
>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0702F03
Length = 141111
Score = 100 bits (212), Expect(4) = 7e-030
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3 / -2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR 122
AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR
Sbjct: 13493 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 13374
Score = 55.1 bits (114), Expect(4) = 7e-030
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +3 / -3
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
+ E V+W DK NLKLLRKGVLTRIY PM
Sbjct: 12976 FREHVLWNDKDTNLKLLRKGVLTRIYAPM 12890
Score = 32.7 bits (65), Expect(4) = 7e-030
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3 / -1
Query: 126 AFIIASTASEEEMLRW 173
AFIIASTA+EEEM W
Sbjct: 13110 AFIIASTATEEEMRNW 13063
Score = 28.6 bits (56), Expect(4) = 7e-030
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3 / -2
Query: 264 IVQSLRESGVFTSAIAAGQPAVNAKLS 344
I++ L+ESGVFT+A+ + + K S
Sbjct: 12797 IIRGLKESGVFTTAVTSAKAHAKFKSS 12717
>gb|CA998828.1|CA998828 S345M_G01 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 394
Score = 96.4 bits (204), Expect(2) = 1e-028
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3 / +2
Query: 285 SGVFTSAIAAGQPAVNAKLSPKETNAQSQNVTAPGNMTRVVRSTDSKASGRKILQAVDLA 464
SGVFTS IAA Q VN K+S KE N Q++N T ++R +S+AS RKIL AV+ A
Sbjct: 80 SGVFTSFIAAAQSLVNDKVSLKENNVQNKNHTKLEKVSRKFIRANSQASARKILHAVEPA 259
Query: 465 FSDTNVTAVPPLSPPSLDEH 524
D NV+AVPPLSPPSLD H
Sbjct: 260 SHDRNVSAVPPLSPPSLDNH 319
Score = 88.6 bits (187), Expect(2) = 2e-027
Identities = 44/78 (56%), Positives = 49/78 (62%)
Frame = -2 / -2
Query: 517 SKLGGDNGGTAVTLVSLKARSTACSIFLPDAFESVDLTTLVMFPGAVTFWLCALVSLGES 338
SKLGGD GGTA T +S A STACSIFL DA E + L F V F L S E+
Sbjct: 312 SKLGGDKGGTADTFLSWLAGSTACSIFLADA*ELALMNFLDTFSNFV*FLF*TLFSFNET 133
Query: 337 LAFTAGWPAAMAEVKTPD 284
L+FT+ W AAM EVKTPD
Sbjct: 132 LSFTSDWAAAMKEVKTPD 79
Score = 58.3 bits (121), Expect(2) = 2e-027
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = -1 / -2
Query: 275 TLNNCHWGVYASQHSFPQKL*VQ 207
TLNNCHWGVYASQHSFP+KL*++
Sbjct: 69 TLNNCHWGVYASQHSFPEKL*IE 1
Score = 54.2 bits (112), Expect(2) = 1e-028
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = +3 / +1
Query: 207 LNLKLLRKGVLTRIYTPMTIVQSLRE 284
L LKLLRKGVLTRIYTPM IVQSLRE
Sbjct: 1 LYLKLLRKGVLTRIYTPMAIVQSLRE 78
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 100 bits (212), Expect(3) = 3e-025
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3 / -3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR 122
AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR
Sbjct: 7350087 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 7349968
Score = 55.1 bits (114), Expect(3) = 3e-025
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +3 / -1
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
+ E V+W DK NLKLLRKGVLTRIY PM
Sbjct: 7349570 FREHVLWNDKDTNLKLLRKGVLTRIYAPM 7349484
Score = 32.7 bits (65), Expect(3) = 3e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3 / -2
Query: 126 AFIIASTASEEEMLRW 173
AFIIASTA+EEEM W
Sbjct: 7349704 AFIIASTATEEEMRNW 7349657
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 100 bits (212), Expect(3) = 4e-025
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3 / -1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR 122
AA+LHYTYTKFSDLTSRRDRCGCKPTKEDVKRCF+L+FDR
Sbjct: 7429424 AAILHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFILEFDR 7429305
Score = 55.1 bits (114), Expect(3) = 4e-025
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +3 / -2
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
+ E V+W DK NLKLLRKGVLTRIY PM
Sbjct: 7428907 FREHVLWNDKDTNLKLLRKGVLTRIYAPM 7428821
Score = 32.7 bits (65), Expect(3) = 4e-025
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3 / -3
Query: 126 AFIIASTASEEEMLRW 173
AFIIASTA+EEEM W
Sbjct: 7429041 AFIIASTATEEEMRNW 7428994
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,350,440,142
Number of Sequences: 438736
Number of extensions: 80008709
Number of successful extensions: 307424
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 184240339843
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)