TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2949674.2.1
(658 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106775.1| Oryza sativa (japonica cultivar-group) cDNA... 164 3e-041
gb|AC120987.2| Oryza sativa (japonica cultivar-group) chrom... 154 9e-036
gb|AC136218.2| Oryza sativa (japonica cultivar-group) chrom... 154 9e-036
gb|AACV01012019.1| Oryza sativa (japonica cultivar-group) c... 154 9e-036
ref|NT_107210.1| Oryza sativa (japonica cultivar-group) 154 9e-036
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 154 9e-036
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 154 9e-036
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 154 9e-036
dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-035
dbj|AP003575.2| Oryza sativa (japonica cultivar-group) geno... 153 2e-035
dbj|AP005382.3| Oryza sativa (japonica cultivar-group) geno... 153 2e-035
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 153 2e-035
gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibbe... 153 2e-035
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 153 2e-035
gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) c... 150 1e-034
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 150 1e-034
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 150 1e-034
dbj|AK059073.1| Oryza sativa (japonica cultivar-group) cDNA... 148 5e-034
gb|AQ866796.1|AQ866796 nbeb0029E15f CUGI Rice BAC Library (... 140 2e-031
dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chro... 140 2e-031
dbj|AP005636.2| Oryza sativa (japonica cultivar-group) geno... 140 2e-031
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 140 2e-031
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 140 2e-031
gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3... 132 4e-029
gb|AC145127.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
gb|AACV01020686.1| Oryza sativa (japonica cultivar-group) c... 113 2e-023
ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chr... 113 2e-023
gb|CH401243.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 113 2e-023
gb|AC078891.2| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 113 2e-023
gb|AC134235.2| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
gb|AACV01006217.1| Oryza sativa (japonica cultivar-group) c... 106 2e-021
ref|NT_107191.1| Oryza sativa (japonica cultivar-group) 106 2e-021
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 106 2e-021
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
>dbj|AK106775.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-G05, full
insert sequence
Length = 1086
Score = 164 bits (353), Expect(2) = 3e-041
Identities = 56/67 (83%), Positives = 63/67 (94%)
Frame = +2 / +1
Query: 329 GSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKR 508
GSL+P ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKR
Sbjct: 514 GSLRPQECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKR 693
Query: 509 GGPKCP* 529
GGPKCP*
Sbjct: 694 GGPKCP* 714
Score = 30.4 bits (60), Expect(2) = 3e-041
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2 / +1
Query: 116 LRLLICCAAMVAIALLPQQGGQA 184
+R L+CC AM A+ L Q GQA
Sbjct: 283 IRALLCCIAMAAMLLSSYQQGQA 351
>gb|AC120987.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0007A06, complete sequence
Length = 148029
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / -3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 75451 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 75272
Query: 527 * 529
*
Sbjct: 75271 * 75269
>gb|AC136218.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0039A21, complete sequence
Length = 139074
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / -2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 7379 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 7200
Query: 527 * 529
*
Sbjct: 7199 * 7197
>gb|AACV01012019.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012019, whole
genome shotgun sequence
Length = 8587
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 5992 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 6171
Query: 527 * 529
*
Sbjct: 6172 * 6174
>ref|NT_107210.1| Oryza sativa (japonica cultivar-group)
Length = 1353368
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / -2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 1033336 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 1033157
Query: 527 * 529
*
Sbjct: 1033156 * 1033154
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043
genomic scaffold, whole genome shotgun sequence
Length = 11965857
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / -2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 466967 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 466788
Query: 527 * 529
*
Sbjct: 466787 * 466785
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / -3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 17767280 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 17767101
Query: 527 * 529
*
Sbjct: 17767100 * 17767098
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 154 bits (331), Expect = 9e-036
Identities = 52/61 (85%), Positives = 58/61 (95%)
Frame = +2 / -1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
ECGGRCA RCSATAY+KPC+FFC+KCCA+CLCV PGTYGNK +CPCYN+WKTKRGGPKCP
Sbjct: 18040124 ECGGRCAYRCSATAYRKPCMFFCQKCCASCLCVLPGTYGNKQSCPCYNDWKTKRGGPKCP 18039945
Query: 527 * 529
*
Sbjct: 18039944 * 18039942
>dbj|AK062516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C07, full
insert sequence
Length = 433
Score = 153 bits (328), Expect = 2e-035
Identities = 55/83 (66%), Positives = 61/83 (73%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 136 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 315
Query: 488 NNWKTKRGGPKCP**PSLSVYLM 556
NNWKTK GGPKCP* L +L+
Sbjct: 316 NNWKTKEGGPKCP*DACLFFFLL 384
>dbj|AP003575.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0528B02
Length = 144495
Score = 153 bits (328), Expect = 2e-035
Identities = 55/83 (66%), Positives = 61/83 (73%)
Frame = +2 / -2
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 25040 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 24861
Query: 488 NNWKTKRGGPKCP**PSLSVYLM 556
NNWKTK GGPKCP* L +L+
Sbjct: 24860 NNWKTKEGGPKCP*DACLFFFLL 24792
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1001_B06
Length = 134810
Score = 153 bits (328), Expect = 2e-035
Identities = 55/83 (66%), Positives = 61/83 (73%)
Frame = +2 / -3
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 129732 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 129553
Query: 488 NNWKTKRGGPKCP**PSLSVYLM 556
NNWKTK GGPKCP* L +L+
Sbjct: 129552 NNWKTKEGGPKCP*DACLFFFLL 129484
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 153 bits (328), Expect = 2e-035
Identities = 55/83 (66%), Positives = 61/83 (73%)
Frame = +2 / -2
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 4550991 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 4550812
Query: 488 NNWKTKRGGPKCP**PSLSVYLM 556
NNWKTK GGPKCP* L +L+
Sbjct: 4550811 NNWKTKEGGPKCP*DACLFFFLL 4550743
>gb|AY604180.1| Oryza sativa (japonica cultivar-group) gibberellin-stimulated
protein (Gsr1) gene, complete cds
Length = 881
Score = 153 bits (328), Expect = 2e-035
Identities = 55/83 (66%), Positives = 61/83 (73%)
Frame = +2 / +1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 325 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 504
Query: 488 NNWKTKRGGPKCP**PSLSVYLM 556
NNWKTK GGPKCP* L +L+
Sbjct: 505 NNWKTKEGGPKCP*DACLFFFLL 573
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 153 bits (328), Expect = 2e-035
Identities = 55/83 (66%), Positives = 61/83 (73%)
Frame = +2 / -1
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 8859411 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 8859232
Query: 488 NNWKTKRGGPKCP**PSLSVYLM 556
NNWKTK GGPKCP* L +L+
Sbjct: 8859231 NNWKTKEGGPKCP*DACLFFFLL 8859163
>gb|AACV01013512.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013512, whole
genome shotgun sequence
Length = 35802
Score = 150 bits (323), Expect = 1e-034
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +2 / +3
Query: 320 PGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWK 499
P G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCYNNWK
Sbjct: 28458 PAAGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWK 28637
Query: 500 TKRGGPKCP**PSLSVYLM 556
TK GGPKCP* L +L+
Sbjct: 28638 TKEGGPKCP*DACLFFFLL 28694
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 150 bits (323), Expect = 1e-034
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +2 / -3
Query: 320 PGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWK 499
P G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCYNNWK
Sbjct: 275282 PAAGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWK 275103
Query: 500 TKRGGPKCP**PSLSVYLM 556
TK GGPKCP* L +L+
Sbjct: 275102 TKEGGPKCP*DACLFFFLL 275046
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 150 bits (323), Expect = 1e-034
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +2 / -2
Query: 320 PGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWK 499
P G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCYNNWK
Sbjct: 8882934 PAAGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCYNNWK 8882755
Query: 500 TKRGGPKCP**PSLSVYLM 556
TK GGPKCP* L +L+
Sbjct: 8882754 TKEGGPKCP*DACLFFFLL 8882698
>dbj|AK059073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H09, full
insert sequence
Length = 697
Score = 148 bits (318), Expect = 5e-034
Identities = 51/69 (73%), Positives = 56/69 (81%)
Frame = +2 / +3
Query: 323 GTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKT 502
G GSL+ ++C +CA RCS T Y+KPCLFFC KCC ACLCVP G YGNK CPCYNNWKT
Sbjct: 261 GQGSLKSYQCSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKT 440
Query: 503 KRGGPKCP* 529
KRGGPKCP*
Sbjct: 441 KRGGPKCP* 467
>gb|AQ866796.1|AQ866796 nbeb0029E15f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0029E15f, DNA sequence
Length = 506
Score = 140 bits (300), Expect = 2e-031
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2 / -1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +CA RCS T Y+KPCLFFC KCC ACLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 242 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 63
Query: 527 * 529
*
Sbjct: 62 * 60
>dbj|AP005152.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone P0439F12, ***
SEQUENCING IN PROGRESS ***
Length = 152695
Score = 140 bits (300), Expect = 2e-031
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2 / +3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +CA RCS T Y+KPCLFFC KCC ACLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 145707 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 145886
Query: 527 * 529
*
Sbjct: 145887 * 145889
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0707C02
Length = 163609
Score = 140 bits (300), Expect = 2e-031
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +CA RCS T Y+KPCLFFC KCC ACLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 60841 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 61020
Query: 527 * 529
*
Sbjct: 61021 * 61023
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 140 bits (300), Expect = 2e-031
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2 / +2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +CA RCS T Y+KPCLFFC KCC ACLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 467255 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 467434
Query: 527 * 529
*
Sbjct: 467435 * 467437
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 140 bits (300), Expect = 2e-031
Identities = 48/61 (78%), Positives = 50/61 (81%)
Frame = +2 / +2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +CA RCS T Y+KPCLFFC KCC ACLCVP G YGNK CPCYNNWKTKRGGPKCP
Sbjct: 14775452 ECSPQCAYRCSQTQYKKPCLFFCNKCCNACLCVPSGLYGNKGECPCYNNWKTKRGGPKCP 14775631
Query: 527 * 529
*
Sbjct: 14775632 * 14775634
>gb|AU162250.1|AU162250 AU162250 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30180, mRNA sequence
Length = 313
Score = 132 bits (283), Expect = 4e-029
Identities = 46/66 (69%), Positives = 50/66 (75%)
Frame = +2 / +2
Query: 308 GGVTPGTGSLQPHECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCY 487
GG G G+L+P EC +CA RCS T Y+K CL FC KCCA CLCVPPGTYGNK CPCY
Sbjct: 110 GGGVAGGGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCAKCLCVPPGTYGNKGACPCY 289
Query: 488 NNWKTK 505
NNWKTK
Sbjct: 290 NNWKTK 307
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
Pseudo10p0.0-10p4.4, complete sequence
Length = 2331000
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 984316 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 984495
Query: 527 * 529
*
Sbjct: 984496 * 984498
>gb|AACV01020686.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020686, whole
genome shotgun sequence
Length = 50720
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 13331 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 13510
Query: 527 * 529
*
Sbjct: 13511 * 13513
>ref|NT_080060.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4008077
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 989455 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 989634
Query: 527 * 529
*
Sbjct: 989635 * 989637
>gb|CH401243.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000080 genomic
scaffold, whole genome shotgun sequence
Length = 3249876
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 1117489 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 1117668
Query: 527 * 529
*
Sbjct: 1117669 * 1117671
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 1117489 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 1117668
Query: 527 * 529
*
Sbjct: 1117669 * 1117671
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
complete sequence
Length = 22685906
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 984316 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 984495
Query: 527 * 529
*
Sbjct: 984496 * 984498
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0092N12, complete sequence
Length = 109198
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / -1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 18238 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 18059
Query: 527 * 529
*
Sbjct: 18058 * 18056
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 113 bits (242), Expect = 2e-023
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC G+C+ RCSAT++ C+ +C CC CLCVP GTYGNK CPCYNN KT+ G PKCP
Sbjct: 984313 ECPGKCSYRCSATSHTTVCMTYCNYCCERCLCVPSGTYGNKEECPCYNNMKTQEGKPKCP 984492
Query: 527 * 529
*
Sbjct: 984493 * 984495
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0030J04, complete sequence
Length = 153431
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 52234 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 52413
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 52414 *CSS*S*FLPR 52446
>gb|AACV01006217.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006217, whole
genome shotgun sequence
Length = 37853
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / -3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 31326 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 31147
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 31146 *CSS*S*FLPR 31114
>ref|NT_107191.1| Oryza sativa (japonica cultivar-group)
Length = 1072208
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / +3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 282489 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 282668
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 282669 *CSS*S*FLPR 282701
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / +2
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 7893275 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 7893454
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 7893455 *CSS*S*FLPR 7893487
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 8085637 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 8085816
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 8085817 *CSS*S*FLPR 8085849
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / +1
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 7864471 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 7864650
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 7864651 *CSS*S*FLPR 7864683
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 106 bits (227), Expect = 2e-021
Identities = 41/71 (57%), Positives = 47/71 (66%)
Frame = +2 / +3
Query: 347 ECGGRCAERCSATAYQKPCLFFCRKCCAACLCVPPGTYGNKNTCPCYNNWKTKRGGPKCP 526
EC +C RCSAT Q+PCL +C CC CLCVP GT GNK CPCYNN K+ +G KCP
Sbjct: 7866636 ECPQKCDYRCSATKRQEPCLKYCNICCQKCLCVPSGTSGNKEECPCYNNLKSSQGNSKCP 7866815
Query: 527 **PSLSVYLMR 559
* S S +L R
Sbjct: 7866816 *CSS*S*FLPR 7866848
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,724,123,558
Number of Sequences: 438736
Number of extensions: 60778196
Number of successful extensions: 510605
Number of sequences better than 1.0e-020: 58
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 144306473079
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)