TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921788.2.1
(606 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106296.1| Oryza sativa (japonica cultivar-group) cDNA... 113 2e-030
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 112 2e-030
gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbar... 112 2e-030
gb|AU225644.1|AU225644 AU225644 Oryza sativa Koshihikari pi... 111 8e-030
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 78 3e-027
gb|AACV01006434.1| Oryza sativa (japonica cultivar-group) c... 78 3e-027
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 112 3e-023
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 112 3e-023
>dbj|AK106296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B11, full
insert sequence
Length = 667
Score = 113 bits (241), Expect(2) = 2e-030
Identities = 45/49 (91%), Positives = 46/49 (93%)
Frame = +1 / +3
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG* 321
AWCFSDPEMKRRRRVASYKAYS EGKVK+S RGFRWIKAKCSELIHG*
Sbjct: 255 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG* 401
Score = 43.2 bits (88), Expect(2) = 2e-030
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1 / +3
Query: 70 EVVPYGDRRIDIIVKPP 120
EVVPYGDRRID++VKPP
Sbjct: 117 EVVPYGDRRIDVVVKPP 167
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 112 bits (240), Expect(2) = 2e-030
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1 / +1
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG 318
AWCFSDPEMKRRRRVASYKAYS EGKVK+S RGFRWIKAKCSELIHG
Sbjct: 1978546 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 1978689
Score = 43.2 bits (88), Expect(2) = 2e-030
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1 / +1
Query: 70 EVVPYGDRRIDIIVKPP 120
EVVPYGDRRID++VKPP
Sbjct: 1978408 EVVPYGDRRIDVVVKPP 1978458
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0032G21, from chromosome 3, complete sequence
Length = 187621
Score = 112 bits (240), Expect(2) = 2e-030
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1 / +3
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG 318
AWCFSDPEMKRRRRVASYKAYS EGKVK+S RGFRWIKAKCSELIHG
Sbjct: 51543 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 51686
Score = 43.2 bits (88), Expect(2) = 2e-030
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1 / +3
Query: 70 EVVPYGDRRIDIIVKPP 120
EVVPYGDRRID++VKPP
Sbjct: 51405 EVVPYGDRRIDVVVKPP 51455
>gb|AU225644.1|AU225644 AU225644 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0625, mRNA sequence
Length = 482
Score = 111 bits (236), Expect(2) = 8e-030
Identities = 44/49 (89%), Positives = 45/49 (91%)
Frame = +1 / +2
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG* 321
AWCFSDPEMKRRRRVASYKAYS EG VK+S RGFRWIKAKCSELIHG*
Sbjct: 266 AWCFSDPEMKRRRRVASYKAYSVEGNVKSSLRRGFRWIKAKCSELIHG* 412
Score = 43.2 bits (88), Expect(2) = 8e-030
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1 / +2
Query: 70 EVVPYGDRRIDIIVKPP 120
EVVPYGDRRID++VKPP
Sbjct: 128 EVVPYGDRRIDVVVKPP 178
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 77.6 bits (163), Expect(3) = 3e-027
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +1 / +3
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGF 279
AWCFSDPEMKRRRR+ASYKAYS EGKVK+S RGF
Sbjct: 10711302 AWCFSDPEMKRRRRLASYKAYSVEGKVKSSLRRGF 10711406
Score = 43.2 bits (88), Expect(3) = 3e-027
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1 / +3
Query: 70 EVVPYGDRRIDIIVKPP 120
EVVPYGDRRID++VKPP
Sbjct: 10711164 EVVPYGDRRIDVVVKPP 10711214
Score = 42.3 bits (86), Expect(3) = 3e-027
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1 / +1
Query: 274 GFRWIKAKCSELIHG 318
GFRWIKAKCSELIHG
Sbjct: 10711402 GFRWIKAKCSELIHG 10711446
>gb|AACV01006434.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006434, whole
genome shotgun sequence
Length = 38209
Score = 77.6 bits (163), Expect(3) = 3e-027
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = +1 / -3
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGF 279
AWCFSDPEMKRRRR+ASYKAYS EGKVK+S RGF
Sbjct: 3317 AWCFSDPEMKRRRRLASYKAYSVEGKVKSSLRRGF 3213
Score = 43.2 bits (88), Expect(3) = 3e-027
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1 / -3
Query: 70 EVVPYGDRRIDIIVKPP 120
EVVPYGDRRID++VKPP
Sbjct: 3455 EVVPYGDRRIDVVVKPP 3405
Score = 42.3 bits (86), Expect(3) = 3e-027
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1 / -1
Query: 274 GFRWIKAKCSELIHG 318
GFRWIKAKCSELIHG
Sbjct: 3217 GFRWIKAKCSELIHG 3173
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 112 bits (240), Expect = 3e-023
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1 / +1
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG 318
AWCFSDPEMKRRRRVASYKAYS EGKVK+S RGFRWIKAKCSELIHG
Sbjct: 10632730 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 10632873
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 112 bits (240), Expect = 3e-023
Identities = 44/48 (91%), Positives = 45/48 (93%)
Frame = +1 / +1
Query: 175 AWCFSDPEMKRRRRVASYKAYSAEGKVKASFPRGFRWIKAKCSELIHG 318
AWCFSDPEMKRRRRVASYKAYS EGKVK+S RGFRWIKAKCSELIHG
Sbjct: 10634629 AWCFSDPEMKRRRRVASYKAYSVEGKVKSSLRRGFRWIKAKCSELIHG 10634772
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,115,788,608
Number of Sequences: 438736
Number of extensions: 43746397
Number of successful extensions: 233178
Number of sequences better than 1.0e-020: 11
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 129847806231
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)