TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121395.1| Oryza sativa (japonica cultivar-group) cDNA... 193 2e-052
gb|CF331570.1|CF331570 NACL--07-L23.g1 Rice callus plasmid ... 181 6e-049
gb|CF331569.1|CF331569 NACL--07-L23.b1 Rice callus plasmid ... 189 8e-048
gb|CF281335.1|CF281335 14ETL--08-F16.g1 Rice etiolated leaf... 177 1e-047
gb|AU031496.1|AU031496 AU031496 Rice cDNA from immature lea... 193 2e-047
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 93 7e-046
gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, N... 93 8e-046
gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) c... 93 8e-046
gb|AY583319.1| Oryza sativa (japonica cultivar-group) cycli... 183 2e-044
ref|XM_470214.1| Oryza sativa (japonica cultivar-group), p... 183 2e-044
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 93 9e-040
gb|C97125.1|C97125 C97125 Rice callus Oryza sativa (japonic... 68 6e-026
>dbj|AK121395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130M16, full
insert sequence
Length = 642
Score = 193 bits (416), Expect(3) = 2e-052
Identities = 76/82 (92%), Positives = 79/82 (96%)
Frame = +2 / +3
Query: 71 GVDREALVDMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG 250
GVDR V+MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG
Sbjct: 90 GVDRGVGVEMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG 269
Query: 251 WVHYAIHRPEPHIMLFRRPINY 316
WVHYAIHRPEPHIMLFRRP+N+
Sbjct: 270 WVHYAIHRPEPHIMLFRRPLNF 335
Score = 188 bits (404), Expect(2) = 2e-047
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = -3 / -3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*
Sbjct: 337 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 158
Query: 138 VSSKYFSEYWI*PMSTNASRSTP 70
VSSKYFSEYWI P+ST RSTP
Sbjct: 157 VSSKYFSEYWIWPISTPTPRSTP 89
Score = 29.9 bits (59), Expect(3) = 2e-052
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 501 WCVPCVRGNSCEGTAM 548
WC PCVR N+ GT M
Sbjct: 527 WCPPCVRENARVGTGM 574
Score = 28.1 bits (55), Expect(2) = 2e-047
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / -1
Query: 550 HMAVPSQEFPRTQGTHQQ 497
+M VP++ F RTQG H Q
Sbjct: 576 YMPVPTRAFSRTQGGHHQ 523
Score = 25.8 bits (50), Expect(3) = 2e-052
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 445 SPFTSLKGGSRYC*FTFVC 501
>gb|CF331570.1|CF331570 NACL--07-L23.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-L23, mRNA sequence
Length = 572
Score = 181 bits (390), Expect(3) = 6e-049
Identities = 70/72 (97%), Positives = 72/72 (100%)
Frame = +2 / -3
Query: 101 GQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPE 280
GQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPE
Sbjct: 570 GQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPE 391
Query: 281 PHIMLFRRPINY 316
PHIMLFRRP+N+
Sbjct: 390 PHIMLFRRPLNF 355
Score = 175 bits (376), Expect(2) = 1e-043
Identities = 70/73 (95%), Positives = 70/73 (95%)
Frame = -3 / +2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*
Sbjct: 353 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 532
Query: 138 VSSKYFSEYWI*P 100
VSSKYFSEYWI P
Sbjct: 533 VSSKYFSEYWIWP 571
Score = 29.9 bits (59), Expect(3) = 6e-049
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / -2
Query: 501 WCVPCVRGNSCEGTAM 548
WC PCVR N+ GT M
Sbjct: 163 WCPPCVRENARVGTGM 116
Score = 28.1 bits (55), Expect(2) = 1e-043
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / +3
Query: 550 HMAVPSQEFPRTQGTHQQ 497
+M VP++ F RTQG H Q
Sbjct: 114 YMPVPTRAFSRTQGGHHQ 167
Score = 25.8 bits (50), Expect(3) = 6e-049
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / -1
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 245 SPFTSLKGGSRYC*FTFVC 189
>gb|CF331569.1|CF331569 NACL--07-L23.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-L23, mRNA sequence
Length = 520
Score = 189 bits (407), Expect(2) = 8e-048
Identities = 75/82 (91%), Positives = 78/82 (95%)
Frame = +2 / +2
Query: 71 GVDREALVDMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG 250
GVDR V+MGQIQYSEKYFDDTYEYRHVVLP EVAKLLPKNRLLSENEWRAIGVQQSRG
Sbjct: 95 GVDRGVGVEMGQIQYSEKYFDDTYEYRHVVLPXEVAKLLPKNRLLSENEWRAIGVQQSRG 274
Query: 251 WVHYAIHRPEPHIMLFRRPINY 316
WVHYAIHRPEPHIMLFRRP+N+
Sbjct: 275 WVHYAIHRPEPHIMLFRRPLNF 340
Score = 184 bits (397), Expect = 8e-045
Identities = 75/83 (90%), Positives = 76/83 (91%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATS GRTTCLYS*
Sbjct: 342 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSXGRTTCLYS* 163
Query: 138 VSSKYFSEYWI*PMSTNASRSTP 70
VSSKYFSEYWI P+ST RSTP
Sbjct: 162 VSSKYFSEYWIWPISTPTPRSTP 94
Score = 25.8 bits (50), Expect(2) = 8e-048
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +3
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 450 SPFTSLKGGSRYC*FTFVC 506
>gb|CF281335.1|CF281335 14ETL--08-F16.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-F16, mRNA sequence
Length = 627
Score = 177 bits (380), Expect(3) = 1e-047
Identities = 71/82 (86%), Positives = 74/82 (90%)
Frame = +2 / +1
Query: 71 GVDREALVDMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG 250
GVDR V+MGQIQYSEKYF TYEYRHVVLPPEV LLPKNRLLSENEWR IGVQQSRG
Sbjct: 88 GVDRGVGVEMGQIQYSEKYFFFTYEYRHVVLPPEVFFLLPKNRLLSENEWRVIGVQQSRG 267
Query: 251 WVHYAIHRPEPHIMLFRRPINY 316
WVHYAIHRPEPHIMLFRRP+N+
Sbjct: 268 WVHYAIHRPEPHIMLFRRPLNF 333
Score = 175 bits (376), Expect(2) = 2e-042
Identities = 70/83 (84%), Positives = 71/83 (85%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPI RHSFSERRRFLGR TSGGRTTCLYS*
Sbjct: 335 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPITRHSFSERRRFLGRRKKTSGGRTTCLYS* 156
Query: 138 VSSKYFSEYWI*PMSTNASRSTP 70
V KYFSEYWI P+ST RSTP
Sbjct: 155 VKKKYFSEYWIWPISTPTPRSTP 87
Score = 29.9 bits (59), Expect(3) = 1e-047
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +1
Query: 501 WCVPCVRGNSCEGTAM 548
WC PCVR N+ GT M
Sbjct: 526 WCPPCVRENARVGTGM 573
Score = 25.8 bits (50), Expect(3) = 1e-047
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +2
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 443 SPFTSLKGGSRYC*FTFVC 499
Score = 23.5 bits (45), Expect(2) = 2e-042
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3 / -3
Query: 558 QPNTWQFLHRNFHEHKAHTSK 496
Q T QFL + HEHK T++
Sbjct: 583 QTFTCQFLLGHSHEHKVDTTQ 521
>gb|AU031496.1|AU031496 AU031496 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61736_1A, mRNA sequence
Length = 587
Score = 193 bits (416), Expect = 2e-047
Identities = 76/82 (92%), Positives = 79/82 (96%)
Frame = +2 / +1
Query: 71 GVDREALVDMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG 250
GVDR V+MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG
Sbjct: 79 GVDRGVGVEMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRG 258
Query: 251 WVHYAIHRPEPHIMLFRRPINY 316
WVHYAIHRPEPHIMLFRRP+N+
Sbjct: 259 WVHYAIHRPEPHIMLFRRPLNF 324
Score = 188 bits (404), Expect = 9e-046
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*
Sbjct: 326 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 147
Query: 138 VSSKYFSEYWI*PMSTNASRSTP 70
VSSKYFSEYWI P+ST RSTP
Sbjct: 146 VSSKYFSEYWIWPISTPTPRSTP 78
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 93.2 bits (197), Expect(5) = 7e-046
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / +1
Query: 209 ENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPINY 316
+NEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP+N+
Sbjct: 966625 QNEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNF 966732
Score = 91.8 bits (194), Expect(3) = 3e-037
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = -3 / -3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 211
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF
Sbjct: 966734 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 966627
Score = 62.0 bits (129), Expect(5) = 7e-046
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2 / +3
Query: 68 RGVDREALVDMGQIQYSEKYFDDTYEYRHVVLP 166
RGVDR V+MGQIQYSEKYFDDTYEYR + +P
Sbjct: 966285 RGVDRGVGVEMGQIQYSEKYFDDTYEYR*MRIP 966383
Score = 54.2 bits (112), Expect(3) = 3e-037
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / -1
Query: 150 LYS*VSSKYFSEYWI*PMSTNASRSTPL 67
LYS*VSSKYFSEYWI P+ST RSTPL
Sbjct: 966367 LYS*VSSKYFSEYWIWPISTPTPRSTPL 966284
Score = 51.5 bits (106), Expect(3) = 3e-037
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3 / -1
Query: 210 SERRRFLGRSLATSGGRTTCL 148
SERRRFLGRSLATSGGRTTCL
Sbjct: 966514 SERRRFLGRSLATSGGRTTCL 966452
Score = 51.0 bits (105), Expect(5) = 7e-046
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2 / +3
Query: 149 RHVVLPPEVAKLLPKNRLLSE 211
RHVVLPPEVAKLLPKNRLLSE
Sbjct: 966453 RHVVLPPEVAKLLPKNRLLSE 966515
Score = 29.9 bits (59), Expect(5) = 7e-046
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +3
Query: 501 WCVPCVRGNSCEGTAM 548
WC PCVR N+ GT M
Sbjct: 966924 WCPPCVRENARVGTGM 966971
Score = 25.8 bits (50), Expect(5) = 7e-046
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +2
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 966842 SPFTSLKGGSRYC*FTFVC 966898
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0067N01, from chromosome 3, complete sequence
Length = 159636
Score = 93.2 bits (197), Expect(5) = 8e-046
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / -3
Query: 209 ENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPINY 316
+NEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP+N+
Sbjct: 116044 QNEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNF 115937
Score = 91.8 bits (194), Expect(3) = 3e-037
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = -3 / +3
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 211
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF
Sbjct: 115935 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 116042
Score = 62.0 bits (129), Expect(5) = 8e-046
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2 / -2
Query: 68 RGVDREALVDMGQIQYSEKYFDDTYEYRHVVLP 166
RGVDR V+MGQIQYSEKYFDDTYEYR + +P
Sbjct: 116384 RGVDRGVGVEMGQIQYSEKYFDDTYEYR*MRIP 116286
Score = 54.2 bits (112), Expect(3) = 3e-037
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / +1
Query: 150 LYS*VSSKYFSEYWI*PMSTNASRSTPL 67
LYS*VSSKYFSEYWI P+ST RSTPL
Sbjct: 116302 LYS*VSSKYFSEYWIWPISTPTPRSTPL 116385
Score = 51.5 bits (106), Expect(3) = 3e-037
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3 / +1
Query: 210 SERRRFLGRSLATSGGRTTCL 148
SERRRFLGRSLATSGGRTTCL
Sbjct: 116155 SERRRFLGRSLATSGGRTTCL 116217
Score = 51.0 bits (105), Expect(5) = 8e-046
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2 / -2
Query: 149 RHVVLPPEVAKLLPKNRLLSE 211
RHVVLPPEVAKLLPKNRLLSE
Sbjct: 116216 RHVVLPPEVAKLLPKNRLLSE 116154
Score = 29.9 bits (59), Expect(5) = 8e-046
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / -2
Query: 501 WCVPCVRGNSCEGTAM 548
WC PCVR N+ GT M
Sbjct: 115745 WCPPCVRENARVGTGM 115698
Score = 25.8 bits (50), Expect(5) = 8e-046
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / -1
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 115827 SPFTSLKGGSRYC*FTFVC 115771
>gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005867, whole
genome shotgun sequence
Length = 94934
Score = 93.2 bits (197), Expect(5) = 8e-046
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / +3
Query: 209 ENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPINY 316
+NEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP+N+
Sbjct: 91980 QNEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNF 92087
Score = 91.8 bits (194), Expect(3) = 3e-037
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 211
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF
Sbjct: 92089 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 91982
Score = 62.0 bits (129), Expect(5) = 8e-046
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2 / +2
Query: 68 RGVDREALVDMGQIQYSEKYFDDTYEYRHVVLP 166
RGVDR V+MGQIQYSEKYFDDTYEYR + +P
Sbjct: 91640 RGVDRGVGVEMGQIQYSEKYFDDTYEYR*MRIP 91738
Score = 54.2 bits (112), Expect(3) = 3e-037
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / -3
Query: 150 LYS*VSSKYFSEYWI*PMSTNASRSTPL 67
LYS*VSSKYFSEYWI P+ST RSTPL
Sbjct: 91722 LYS*VSSKYFSEYWIWPISTPTPRSTPL 91639
Score = 51.5 bits (106), Expect(3) = 3e-037
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3 / -3
Query: 210 SERRRFLGRSLATSGGRTTCL 148
SERRRFLGRSLATSGGRTTCL
Sbjct: 91869 SERRRFLGRSLATSGGRTTCL 91807
Score = 51.0 bits (105), Expect(5) = 8e-046
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2 / +2
Query: 149 RHVVLPPEVAKLLPKNRLLSE 211
RHVVLPPEVAKLLPKNRLLSE
Sbjct: 91808 RHVVLPPEVAKLLPKNRLLSE 91870
Score = 29.9 bits (59), Expect(5) = 8e-046
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / +2
Query: 501 WCVPCVRGNSCEGTAM 548
WC PCVR N+ GT M
Sbjct: 92279 WCPPCVRENARVGTGM 92326
Score = 25.8 bits (50), Expect(5) = 8e-046
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / +1
Query: 406 TPFPSLKGASLFC*SIPLC 462
+PF SLKG S +C* +C
Sbjct: 92197 SPFTSLKGGSRYC*FTFVC 92253
>gb|AY583319.1| Oryza sativa (japonica cultivar-group) cyclin-dependent kinase
subunit (CKS1) mRNA, complete cds
Length = 273
Score = 183 bits (395), Expect = 2e-044
Identities = 71/73 (97%), Positives = 73/73 (100%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 180
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+N+
Sbjct: 181 EPHIMLFRRPLNF 219
Score = 175 bits (376), Expect = 7e-042
Identities = 70/73 (95%), Positives = 70/73 (95%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*
Sbjct: 221 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 42
Query: 138 VSSKYFSEYWI*P 100
VSSKYFSEYWI P
Sbjct: 41 VSSKYFSEYWIWP 3
>ref|XM_470214.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 273
Score = 183 bits (395), Expect = 2e-044
Identities = 71/73 (97%), Positives = 73/73 (100%)
Frame = +2 / +1
Query: 98 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 277
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 180
Query: 278 EPHIMLFRRPINY 316
EPHIMLFRRP+N+
Sbjct: 181 EPHIMLFRRPLNF 219
Score = 175 bits (376), Expect = 7e-042
Identities = 70/73 (95%), Positives = 70/73 (95%)
Frame = -3 / -2
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 139
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS*
Sbjct: 221 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSFSERRRFLGRSLATSGGRTTCLYS* 42
Query: 138 VSSKYFSEYWI*P 100
VSSKYFSEYWI P
Sbjct: 41 VSSKYFSEYWIWP 3
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 93.2 bits (197), Expect(3) = 9e-040
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / +2
Query: 209 ENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPINY 316
+NEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP+N+
Sbjct: 2566124 QNEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNF 2566231
Score = 91.8 bits (194), Expect(3) = 3e-037
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = -3 / -1
Query: 318 W*LIGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 211
W L GRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF
Sbjct: 2566233 WKLSGRRNSMMCGSGRWIA*CTHPRLCCTPIARHSF 2566126
Score = 62.0 bits (129), Expect(3) = 9e-040
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2 / +1
Query: 68 RGVDREALVDMGQIQYSEKYFDDTYEYRHVVLP 166
RGVDR V+MGQIQYSEKYFDDTYEYR + +P
Sbjct: 2565784 RGVDRGVGVEMGQIQYSEKYFDDTYEYR*MRIP 2565882
Score = 54.2 bits (112), Expect(3) = 3e-037
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = -3 / -2
Query: 150 LYS*VSSKYFSEYWI*PMSTNASRSTPL 67
LYS*VSSKYFSEYWI P+ST RSTPL
Sbjct: 2565866 LYS*VSSKYFSEYWIWPISTPTPRSTPL 2565783
Score = 51.5 bits (106), Expect(3) = 3e-037
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = -3 / -2
Query: 210 SERRRFLGRSLATSGGRTTCL 148
SERRRFLGRSLATSGGRTTCL
Sbjct: 2566013 SERRRFLGRSLATSGGRTTCL 2565951
Score = 51.0 bits (105), Expect(3) = 9e-040
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2 / +1
Query: 149 RHVVLPPEVAKLLPKNRLLSE 211
RHVVLPPEVAKLLPKNRLLSE
Sbjct: 2565952 RHVVLPPEVAKLLPKNRLLSE 2566014
>gb|C97125.1|C97125 C97125 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52236_1A, mRNA sequence
Length = 284
Score = 67.5 bits (141), Expect(3) = 6e-026
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = +2 / +1
Query: 71 GVDREALVDMGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPK 193
GVDR V+MGQIQ SEK FDDTYEYRH VLPPE P+
Sbjct: 76 GVDRGVGVEMGQIQXSEKXFDDTYEYRHXVLPPESPSSSPR 198
Score = 58.3 bits (121), Expect(3) = 6e-026
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = +2 / +3
Query: 173 VAKLLPKNRLLSENEWRAIGVQQSRG 250
VAKLLPKNRLLSENEWRAIGVQQ G
Sbjct: 177 VAKLLPKNRLLSENEWRAIGVQQXAG 254
Score = 32.7 bits (65), Expect(3) = 6e-026
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 245 RGWVHYAIHRPE 280
RGWVHYAI RPE
Sbjct: 248 RGWVHYAIXRPE 283
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,763,513,853
Number of Sequences: 438736
Number of extensions: 72646358
Number of successful extensions: 375464
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 181517576200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)