TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2823202.2.1
(529 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB665368.1|CB665368 OSJNEd11L13.r OSJNEd Oryza sativa (j... 155 2e-036
gb|CB666819.1|CB666819 OSJNEd13N23.r OSJNEd Oryza sativa (j... 155 2e-036
gb|CB668149.1|CB668149 OSJNEd15N19.r OSJNEd Oryza sativa (j... 155 2e-036
dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA... 155 2e-036
ref|XM_474151.1| Oryza sativa (japonica cultivar-group), p... 155 2e-036
dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA... 153 2e-035
gb|CB665367.1|CB665367 OSJNEd11L13.f OSJNEd Oryza sativa (j... 138 3e-031
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 76 4e-026
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 76 4e-026
emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromoso... 76 4e-026
gb|AACV01010593.1| Oryza sativa (japonica cultivar-group) c... 76 5e-026
gb|AQ864274.1|AQ864274 nbeb0022J06r CUGI Rice BAC Library (... 76 2e-025
gb|AZ130201.1|AZ130201 OSJNBb0102O07r CUGI Rice BAC Library... 71 1e-024
gb|CB668148.1|CB668148 OSJNEd15N19.f OSJNEd Oryza sativa (j... 116 2e-024
>gb|CB665368.1|CB665368 OSJNEd11L13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L13 3', mRNA sequence
Length = 806
Score = 155 bits (334), Expect = 2e-036
Identities = 67/87 (77%), Positives = 71/87 (81%)
Frame = +3 / -3
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 498 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 319
Query: 186 ALPVVQKRIAQGGVRLAAILNRIFGGN 266
ALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 318 ALPVVQKRIAQGGVRLAAILNRIFSGN 238
>gb|CB666819.1|CB666819 OSJNEd13N23.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N23 3', mRNA sequence
Length = 808
Score = 155 bits (334), Expect = 2e-036
Identities = 67/87 (77%), Positives = 71/87 (81%)
Frame = +3 / -1
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 532 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 353
Query: 186 ALPVVQKRIAQGGVRLAAILNRIFGGN 266
ALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 352 ALPVVQKRIAQGGVRLAAILNRIFSGN 272
>gb|CB668149.1|CB668149 OSJNEd15N19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N19 3', mRNA sequence
Length = 818
Score = 155 bits (334), Expect = 2e-036
Identities = 67/87 (77%), Positives = 71/87 (81%)
Frame = +3 / -3
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 534 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 355
Query: 186 ALPVVQKRIAQGGVRLAAILNRIFGGN 266
ALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 354 ALPVVQKRIAQGGVRLAAILNRIFSGN 274
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
insert sequence
Length = 1146
Score = 155 bits (334), Expect = 2e-036
Identities = 67/87 (77%), Positives = 71/87 (81%)
Frame = +3 / +3
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 621 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 800
Query: 186 ALPVVQKRIAQGGVRLAAILNRIFGGN 266
ALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 801 ALPVVQKRIAQGGVRLAAILNRIFSGN 881
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 873
Score = 155 bits (334), Expect = 2e-036
Identities = 67/87 (77%), Positives = 71/87 (81%)
Frame = +3 / +1
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 595 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 774
Query: 186 ALPVVQKRIAQGGVRLAAILNRIFGGN 266
ALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 775 ALPVVQKRIAQGGVRLAAILNRIFSGN 855
>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full
insert sequence
Length = 484
Score = 153 bits (328), Expect = 2e-035
Identities = 66/85 (77%), Positives = 69/85 (81%)
Frame = +3 / +2
Query: 12 IQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFAAL 191
I+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFAAL
Sbjct: 2 IKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFAAL 181
Query: 192 PVVQKRIAQGGVRLAAILNRIFGGN 266
PVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 182 PVVQKRIAQGGVRLAAILNRIFSGN 256
>gb|CB665367.1|CB665367 OSJNEd11L13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L13 5', mRNA sequence
Length = 835
Score = 138 bits (297), Expect = 3e-031
Identities = 60/79 (75%), Positives = 64/79 (81%)
Frame = +3 / +2
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 599 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 778
Query: 186 ALPVVQKRIAQGGVRLAAI 242
ALPVVQKRIAQGGVRLAAI
Sbjct: 779 ALPVVQKRIAQGGVRLAAI 835
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 76.2 bits (160), Expect(3) = 4e-026
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3 / +2
Query: 168 DDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
DDYFFAALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 10894376 DDYFFAALPVVQKRIAQGGVRLAAILNRIFSGN 10894474
Score = 51.5 bits (106), Expect(3) = 4e-026
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3 / +3
Query: 96 KYAAESAKLACTAYEGVDQDSTLEDDYF 179
+YA ESAKLAC AYEGV+Q+STLE +F
Sbjct: 10894194 RYAEESAKLACKAYEGVEQESTLEGKFF 10894277
Score = 31.3 bits (62), Expect(3) = 4e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +3
Query: 66 CRSRTKTCADK 98
CRSRTKTCADK
Sbjct: 10894074 CRSRTKTCADK 10894106
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 76.2 bits (160), Expect(3) = 4e-026
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3 / +1
Query: 168 DDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
DDYFFAALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 685135 DDYFFAALPVVQKRIAQGGVRLAAILNRIFSGN 685233
Score = 51.5 bits (106), Expect(3) = 4e-026
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 96 KYAAESAKLACTAYEGVDQDSTLEDDYF 179
+YA ESAKLAC AYEGV+Q+STLE +F
Sbjct: 684953 RYAEESAKLACKAYEGVEQESTLEGKFF 685036
Score = 31.3 bits (62), Expect(3) = 4e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 66 CRSRTKTCADK 98
CRSRTKTCADK
Sbjct: 684833 CRSRTKTCADK 684865
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
complete sequence
Length = 151506
Score = 76.2 bits (160), Expect(3) = 4e-026
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3 / +1
Query: 168 DDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
DDYFFAALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 62368 DDYFFAALPVVQKRIAQGGVRLAAILNRIFSGN 62466
Score = 51.5 bits (106), Expect(3) = 4e-026
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 96 KYAAESAKLACTAYEGVDQDSTLEDDYF 179
+YA ESAKLAC AYEGV+Q+STLE +F
Sbjct: 62186 RYAEESAKLACKAYEGVEQESTLEGKFF 62269
Score = 31.3 bits (62), Expect(3) = 4e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 66 CRSRTKTCADK 98
CRSRTKTCADK
Sbjct: 62066 CRSRTKTCADK 62098
>gb|AACV01010593.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010593, whole
genome shotgun sequence
Length = 24024
Score = 76.2 bits (160), Expect(3) = 5e-026
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3 / +3
Query: 168 DDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
DDYFFAALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 13983 DDYFFAALPVVQKRIAQGGVRLAAILNRIFSGN 14081
Score = 51.5 bits (106), Expect(3) = 5e-026
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3 / +1
Query: 96 KYAAESAKLACTAYEGVDQDSTLEDDYF 179
+YA ESAKLAC AYEGV+Q+STLE +F
Sbjct: 13801 RYAEESAKLACKAYEGVEQESTLEGKFF 13884
Score = 31.3 bits (62), Expect(3) = 5e-026
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +1
Query: 66 CRSRTKTCADK 98
CRSRTKTCADK
Sbjct: 13681 CRSRTKTCADK 13713
>gb|AQ864274.1|AQ864274 nbeb0022J06r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022J06r, DNA sequence
Length = 732
Score = 76.2 bits (160), Expect(3) = 2e-025
Identities = 32/33 (96%), Positives = 32/33 (96%)
Frame = +3 / +2
Query: 168 DDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
DDYFFAALPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 554 DDYFFAALPVVQKRIAQGGVRLAAILNRIFSGN 652
Score = 49.2 bits (101), Expect(3) = 2e-025
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3 / +2
Query: 96 KYAAESAKLACTAYEGVDQDSTLEDDY 176
+YA ESAKLAC AYEGV+Q+STLE +
Sbjct: 371 RYAEESAKLACKAYEGVEQESTLESKF 451
Score = 31.3 bits (62), Expect(3) = 2e-025
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +2
Query: 66 CRSRTKTCADK 98
CRSRTKTCADK
Sbjct: 251 CRSRTKTCADK 283
>gb|AZ130201.1|AZ130201 OSJNBb0102O07r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0102O07r, DNA
sequence
Length = 1136
Score = 71.2 bits (149), Expect(3) = 1e-024
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +3 / +3
Query: 168 DDYFFAALPVVQKRIAQGGVRLAAILNRIFGGN 266
DDY FA LPVVQKRIAQGGVRLAAILNRIF GN
Sbjct: 486 DDYXFACLPVVQKRIAQGGVRLAAILNRIFSGN 584
Score = 51.5 bits (106), Expect(3) = 1e-024
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3 / +1
Query: 96 KYAAESAKLACTAYEGVDQDSTLEDDYF 179
+YA ESAKLAC AYEGV+Q+STLE +F
Sbjct: 304 RYAEESAKLACKAYEGVEQESTLEGKFF 387
Score = 31.3 bits (62), Expect(3) = 1e-024
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3 / +1
Query: 66 CRSRTKTCADK 98
CRSRTKTCADK
Sbjct: 184 CRSRTKTCADK 216
>gb|CB668148.1|CB668148 OSJNEd15N19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N19 5', mRNA sequence
Length = 804
Score = 116 bits (247), Expect = 2e-024
Identities = 49/68 (72%), Positives = 53/68 (77%)
Frame = +3 / +3
Query: 6 RAIQQNITXXXXXXXXXXXXCRSRTKTCADKYAAESAKLACTAYEGVDQDSTLEDDYFFA 185
+AI+ NIT CRSRTKTCADKYA ESAKLAC AYEGV+Q+STLEDDYFFA
Sbjct: 600 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFA 779
Query: 186 ALPVVQKR 209
ALPVVQKR
Sbjct: 780 ALPVVQKR 803
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,561,265,344
Number of Sequences: 438736
Number of extensions: 57481748
Number of successful extensions: 963072
Number of sequences better than 1.0e-020: 17
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 106239114189
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)