TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067645.1| Oryza sativa (japonica cultivar-group) cDNA... 132 2e-034
ref|XM_479582.1| Oryza sativa (japonica cultivar-group), mRNA 132 2e-034
dbj|AP005167.4| Oryza sativa (japonica cultivar-group) geno... 75 9e-031
gb|AACV01017041.1| Oryza sativa (japonica cultivar-group) c... 75 1e-030
gb|CA998296.1|CA998296 S345B_C01 Rice cold stress germinati... 133 1e-029
gb|CB649467.1|CB649467 OSJNEb13G15.f OSJNEb Oryza sativa (j... 133 1e-029
dbj|AK100282.1| Oryza sativa (japonica cultivar-group) cDNA... 128 4e-028
ref|XM_464312.1| Oryza sativa (japonica cultivar-group), mRNA 118 4e-025
dbj|AK119588.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-024
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 77 4e-024
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 77 4e-024
gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbar... 77 4e-024
gb|AACV01006521.1| Oryza sativa (japonica cultivar-group) c... 77 4e-024
dbj|AK059448.1| Oryza sativa (japonica cultivar-group) cDNA... 115 5e-024
ref|XM_467318.1| Oryza sativa (japonica cultivar-group), mRNA 115 5e-024
gb|D15824.1|D15824 RICC1356A Rice callus Oryza sativa (japo... 111 7e-023
gb|CA997937.1|CA997937 S234A1_B11 Rice cold stress germinat... 111 7e-023
dbj|AK059644.1| Oryza sativa (japonica cultivar-group) cDNA... 111 7e-023
dbj|AK103873.1| Oryza sativa (japonica cultivar-group) cDNA... 111 7e-023
ref|XM_481813.1| Oryza sativa (japonica cultivar-group), mRNA 111 7e-023
ref|XM_507200.1| PREDICTED Oryza sativa (japonica cultivar-... 111 7e-023
gb|AU166120.1|AU166120 AU166120 Rice panicle shorter than 3... 109 2e-022
gb|CB656056.1|CB656056 OSJNEc09P11.f OSJNEc Oryza sativa (j... 109 2e-022
gb|CV728430.1|CV728430 COLD--01-G01.b1 Cold treated rice le... 109 2e-022
dbj|AK069336.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-022
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 70 3e-022
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 70 3e-022
gb|AC097175.2| Oryza sativa (japonica cultivar-group) chrom... 70 3e-022
gb|AACV01012451.1| Oryza sativa (japonica cultivar-group) c... 70 3e-022
dbj|AK106400.1| Oryza sativa (japonica cultivar-group) cDNA... 108 6e-022
ref|XM_473755.1| Oryza sativa (japonica cultivar-group), p... 108 6e-022
gb|C74778.1|C74778 C74778 Rice cDNA from immature leaf incl... 105 4e-021
>dbj|AK067645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112H14, full
insert sequence
Length = 1521
Score = 132 bits (283), Expect(3) = 2e-034
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWT ELHERFVEAV+QLGGPDKATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 340 LVLSTDAKPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 507
Score = 109 bits (233), Expect(4) = 3e-034
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = -3 / -2
Query: 578 LLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
LLRW RV+PGIPMSLM+VFGVALSGPPS* TASTKRSC+S VHF RGLASVERT
Sbjct: 503 LLRW*RVNPGIPMSLMIVFGVALSGPPS*FTASTKRSCNSDVHFNRGLASVERT 342
Score = 40.5 bits (82), Expect(4) = 3e-034
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -2
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 314 CRRNCFSGGKPGLED 270
Score = 32.7 bits (65), Expect(3) = 2e-034
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +1
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 277 RPGLPPEKQFLL 312
Score = 27.6 bits (54), Expect(4) = 3e-034
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 334 RTGAGYGCGAVADDTSA 284
+TGAGY VADDTS+
Sbjct: 274 KTGAGYHSEPVADDTSS 224
Score = 26.7 bits (52), Expect(4) = 3e-034
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1 / -2
Query: 271 YVSCSAPVMY*NVWL 227
Y+ CS PVM+*NV L
Sbjct: 233 YIICSVPVMH*NVCL 189
Score = 22.1 bits (42), Expect(3) = 2e-034
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1 / +2
Query: 220 MPATRHFST*QELNN* 267
+ A RHFS * ELN *
Sbjct: 182 LQADRHFSA*LELNR* 229
>ref|XM_479582.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1521
Score = 132 bits (283), Expect(3) = 2e-034
Identities = 54/56 (96%), Positives = 55/56 (98%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWT ELHERFVEAV+QLGGPDKATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 340 LVLSTDAKPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 507
Score = 109 bits (233), Expect(4) = 3e-034
Identities = 47/54 (87%), Positives = 50/54 (92%)
Frame = -3 / -2
Query: 578 LLRWYRVSPGIPMSLMMVFGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
LLRW RV+PGIPMSLM+VFGVALSGPPS* TASTKRSC+S VHF RGLASVERT
Sbjct: 503 LLRW*RVNPGIPMSLMIVFGVALSGPPS*FTASTKRSCNSDVHFNRGLASVERT 342
Score = 40.5 bits (82), Expect(4) = 3e-034
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / -2
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 314 CRRNCFSGGKPGLED 270
Score = 32.7 bits (65), Expect(3) = 2e-034
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +1
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 277 RPGLPPEKQFLL 312
Score = 27.6 bits (54), Expect(4) = 3e-034
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1 / -3
Query: 334 RTGAGYGCGAVADDTSA 284
+TGAGY VADDTS+
Sbjct: 274 KTGAGYHSEPVADDTSS 224
Score = 26.7 bits (52), Expect(4) = 3e-034
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1 / -2
Query: 271 YVSCSAPVMY*NVWL 227
Y+ CS PVM+*NV L
Sbjct: 233 YIICSVPVMH*NVCL 189
Score = 22.1 bits (42), Expect(3) = 2e-034
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1 / +2
Query: 220 MPATRHFST*QELNN* 267
+ A RHFS * ELN *
Sbjct: 182 LQADRHFSA*LELNR* 229
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0060O17
Length = 180015
Score = 75.3 bits (158), Expect(3) = 3e-028
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = +1 / -2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 525
LVLSTDAKPRLKWT ELHERFVEAV+QLGGPD K
Sbjct: 157637 LVLSTDAKPRLKWTSELHERFVEAVNQLGGPDSEYSK 157527
Score = 67.0 bits (140), Expect(5) = 9e-031
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -3 / +1
Query: 524 FGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
F +LSGPPS* TASTKRSC+S VHF RGLASVERT
Sbjct: 157528 FEYSLSGPPS*FTASTKRSCNSDVHFNRGLASVERT 157635
Score = 58.8 bits (122), Expect(3) = 3e-028
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1 / -1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 157443 EATPKTIMRLMGIPGLTLYHLKSH 157372
Score = 47.3 bits (97), Expect(5) = 9e-031
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -3 / +2
Query: 578 LLRWYRVSPGIPMSLMMVFGVA 513
LLRW RV+PGIPMSLM+VFGVA
Sbjct: 157376 LLRW*RVNPGIPMSLMIVFGVA 157441
Score = 40.5 bits (82), Expect(5) = 9e-031
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / +1
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 157663 CRRNCFSGGKPGLED 157707
Score = 32.7 bits (65), Expect(3) = 3e-028
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / -2
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 157700 RPGLPPEKQFLL 157665
Score = 30.9 bits (61), Expect(5) = 9e-031
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1 / +2
Query: 334 RTGAGYGCGAVADDTSAAV 278
+TGAGY VADDTS+A+
Sbjct: 157703 KTGAGYHSEPVADDTSSAI 157759
Score = 23.5 bits (45), Expect(5) = 9e-031
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1 / +2
Query: 265 SCSAPVMY*NVWL 227
+CS PVM+*NV L
Sbjct: 157874 TCSVPVMH*NVCL 157912
>gb|AACV01017041.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017041, whole
genome shotgun sequence
Length = 36127
Score = 75.3 bits (158), Expect(3) = 3e-028
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = +1 / -1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 525
LVLSTDAKPRLKWT ELHERFVEAV+QLGGPD K
Sbjct: 6073 LVLSTDAKPRLKWTSELHERFVEAVNQLGGPDSEYSK 5963
Score = 67.0 bits (140), Expect(5) = 1e-030
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -3 / +3
Query: 524 FGVALSGPPS*CTASTKRSCSSGVHFRRGLASVERT 417
F +LSGPPS* TASTKRSC+S VHF RGLASVERT
Sbjct: 5964 FEYSLSGPPS*FTASTKRSCNSDVHFNRGLASVERT 6071
Score = 58.8 bits (122), Expect(3) = 3e-028
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1 / -3
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMGIPGLTLYHLKSH
Sbjct: 5879 EATPKTIMRLMGIPGLTLYHLKSH 5808
Score = 47.3 bits (97), Expect(5) = 1e-030
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -3 / +1
Query: 578 LLRWYRVSPGIPMSLMMVFGVA 513
LLRW RV+PGIPMSLM+VFGVA
Sbjct: 5812 LLRW*RVNPGIPMSLMIVFGVA 5877
Score = 40.5 bits (82), Expect(5) = 1e-030
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 377 CRRNCFSGGKPGLDE 333
CRRNCFSGGKPGL++
Sbjct: 6099 CRRNCFSGGKPGLED 6143
Score = 32.7 bits (65), Expect(3) = 3e-028
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / -1
Query: 340 RPGLPPEKQFLL 375
RPGLPPEKQFLL
Sbjct: 6136 RPGLPPEKQFLL 6101
Score = 30.9 bits (61), Expect(5) = 1e-030
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1 / +1
Query: 334 RTGAGYGCGAVADDTSAAV 278
+TGAGY VADDTS+A+
Sbjct: 6139 KTGAGYHSEPVADDTSSAI 6195
Score = 23.5 bits (45), Expect(5) = 1e-030
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1 / +1
Query: 265 SCSAPVMY*NVWL 227
+CS PVM+*NV L
Sbjct: 6310 TCSVPVMH*NVCL 6348
>gb|CA998296.1|CA998296 S345B_C01 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 517
Score = 133 bits (286), Expect = 1e-029
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+KATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 83 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTLYHLKSH 250
>gb|CB649467.1|CB649467 OSJNEb13G15.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13G15 5', mRNA sequence
Length = 842
Score = 133 bits (286), Expect = 1e-029
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+KATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 281 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTLYHLKSH 448
>dbj|AK100282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074M06, full
insert sequence
Length = 1617
Score = 128 bits (275), Expect = 4e-028
Identities = 52/56 (92%), Positives = 55/56 (98%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+KATPKTIMRLMG+PGLTL HLKSH
Sbjct: 293 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTL*HLKSH 460
>ref|XM_464312.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1068
Score = 118 bits (253), Expect = 4e-025
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELHERFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 25 LVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 192
>dbj|AK119588.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C12, full
insert sequence
Length = 1423
Score = 117 bits (250), Expect = 1e-024
Identities = 46/56 (82%), Positives = 52/56 (92%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+TD KPRL+WT ELH+RFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 103 LVLTTDPKPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 270
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 76.7 bits (161), Expect(2) = 4e-024
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+
Sbjct: 11929344 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPE 11929439
Score = 58.3 bits (121), Expect(2) = 4e-024
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / +1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 11929516 EATPKTIMRLMGVPGLTLYHLKSH 11929587
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 76.7 bits (161), Expect(2) = 4e-024
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+
Sbjct: 3154749 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPE 3154844
Score = 58.3 bits (121), Expect(2) = 4e-024
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / +1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 3154921 EATPKTIMRLMGVPGLTLYHLKSH 3154992
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0035J18, from chromsome 3, complete sequence
Length = 162711
Score = 76.7 bits (161), Expect(2) = 4e-024
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / -3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+
Sbjct: 98164 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPE 98069
Score = 58.3 bits (121), Expect(2) = 4e-024
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / -1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 97992 EATPKTIMRLMGVPGLTLYHLKSH 97921
>gb|AACV01006521.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006521, whole
genome shotgun sequence
Length = 52599
Score = 76.7 bits (161), Expect(2) = 4e-024
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELHERFVEAV+QLGGP+
Sbjct: 43621 LVLSTDAKPRLKWTPELHERFVEAVNQLGGPE 43716
Score = 58.3 bits (121), Expect(2) = 4e-024
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / +2
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKTIMRLMG+PGLTLYHLKSH
Sbjct: 43793 EATPKTIMRLMGVPGLTLYHLKSH 43864
>dbj|AK059448.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A10, full
insert sequence
Length = 1504
Score = 115 bits (245), Expect = 5e-024
Identities = 44/56 (78%), Positives = 52/56 (92%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VLS D KPRL+WTP+LHERFVEAV +LGGPDKATPK+++RLMG+ GLTLYHLKSH
Sbjct: 501 VVLSRDPKPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSH 668
>ref|XM_467318.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1504
Score = 115 bits (245), Expect = 5e-024
Identities = 44/56 (78%), Positives = 52/56 (92%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+VLS D KPRL+WTP+LHERFVEAV +LGGPDKATPK+++RLMG+ GLTLYHLKSH
Sbjct: 501 VVLSRDPKPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSH 668
>gb|D15824.1|D15824 RICC1356A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1356A, mRNA sequence
Length = 570
Score = 111 bits (237), Expect = 7e-023
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LH+RFV+AV QLGGPDKATPKTIMR MG+ GLTL+HLKSH
Sbjct: 132 LVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSH 299
>gb|CA997937.1|CA997937 S234A1_B11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 746
Score = 111 bits (237), Expect = 7e-023
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LH+RFV+AV QLGGPDKATPKTIMR MG+ GLTL+HLKSH
Sbjct: 203 LVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSH 370
>dbj|AK059644.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B12, full
insert sequence
Length = 1175
Score = 111 bits (237), Expect = 7e-023
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LH+RFV+AV QLGGPDKATPKTIMR MG+ GLTL+HLKSH
Sbjct: 155 LVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSH 322
>dbj|AK103873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149L11, full
insert sequence
Length = 1201
Score = 111 bits (237), Expect = 7e-023
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LH+RFV+AV QLGGPDKATPKTIMR MG+ GLTL+HLKSH
Sbjct: 198 LVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSH 365
>ref|XM_481813.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1175
Score = 111 bits (237), Expect = 7e-023
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LH+RFV+AV QLGGPDKATPKTIMR MG+ GLTL+HLKSH
Sbjct: 155 LVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSH 322
>ref|XM_507200.1| PREDICTED Oryza sativa (japonica cultivar-group), P0410E11.132-1
mRNA
Length = 1202
Score = 111 bits (237), Expect = 7e-023
Identities = 43/56 (76%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LH+RFV+AV QLGGPDKATPKTIMR MG+ GLTL+HLKSH
Sbjct: 199 LVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSH 366
>gb|AU166120.1|AU166120 AU166120 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31716, mRNA sequence
Length = 404
Score = 109 bits (233), Expect = 2e-022
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 166 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 333
>gb|CB656056.1|CB656056 OSJNEc09P11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09P11 5', mRNA sequence
Length = 823
Score = 109 bits (233), Expect = 2e-022
Identities = 42/53 (79%), Positives = 48/53 (90%)
Frame = +1 / +2
Query: 424 STDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
+TD PRL+WT ELH+RFV+AV QLGGPDKATPKTIMR+MG+ GLTLYHLKSH
Sbjct: 2 TTDPNPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 160
>gb|CV728430.1|CV728430 COLD--01-G01.b1 Cold treated rice leaf lambda phage cDNA library
(COLD) Oryza sativa (japonica cultivar-group) cDNA clone
COLD--01-G01, mRNA sequence
Length = 513
Score = 109 bits (233), Expect = 2e-022
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 339 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 506
>dbj|AK069336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010K22, full
insert sequence
Length = 2703
Score = 109 bits (233), Expect = 2e-022
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP+KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 396 LVLTADPKPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSH 563
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 70.3 bits (147), Expect(2) = 3e-022
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +1 / -2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +
Sbjct: 6273503 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAE 6273408
Score = 58.3 bits (121), Expect(2) = 3e-022
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / -1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 6273336 EATPKTVMRLMGIPGLTLYHLKSH 6273265
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 70.3 bits (147), Expect(2) = 3e-022
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +1 / -3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +
Sbjct: 262159 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAE 262064
Score = 58.3 bits (121), Expect(2) = 3e-022
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / -2
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 261992 EATPKTVMRLMGIPGLTLYHLKSH 261921
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
complete sequence
Length = 138584
Score = 70.3 bits (147), Expect(2) = 3e-022
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +1 / -2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +
Sbjct: 76042 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAE 75947
Score = 58.3 bits (121), Expect(2) = 3e-022
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / -1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 75875 EATPKTVMRLMGIPGLTLYHLKSH 75804
>gb|AACV01012451.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012451, whole
genome shotgun sequence
Length = 34650
Score = 70.3 bits (147), Expect(2) = 3e-022
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
LVLSTDAKPRLKWTPELH+RFV+AV+QLGG +
Sbjct: 23278 LVLSTDAKPRLKWTPELHQRFVDAVNQLGGAE 23373
Score = 58.3 bits (121), Expect(2) = 3e-022
Identities = 22/24 (91%), Positives = 24/24 (100%)
Frame = +1 / +3
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPKT+MRLMGIPGLTLYHLKSH
Sbjct: 23445 EATPKTVMRLMGIPGLTLYHLKSH 23516
>dbj|AK106400.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G05, full
insert sequence
Length = 1656
Score = 108 bits (230), Expect = 6e-022
Identities = 40/51 (78%), Positives = 48/51 (94%)
Frame = +1 / +2
Query: 430 DAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
D KPRL+WTP+LHERFV+AV +LGGPDKATPK+++RLMG+ GLTLYHLKSH
Sbjct: 275 DPKPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSH 427
>ref|XM_473755.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 750
Score = 108 bits (230), Expect = 6e-022
Identities = 40/51 (78%), Positives = 48/51 (94%)
Frame = +1 / +1
Query: 430 DAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
D KPRL+WTP+LHERFV+AV +LGGPDKATPK+++RLMG+ GLTLYHLKSH
Sbjct: 55 DPKPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSH 207
>gb|C74778.1|C74778 C74778 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E51028_1A,
mRNA sequence
Length = 390
Score = 105 bits (224), Expect = 4e-021
Identities = 41/56 (73%), Positives = 49/56 (87%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGG +KATPKTI+R MG+ GLTL+HLKSH
Sbjct: 152 LVLTADPKPRLRWTADLHERFVDAVAQLGGXEKATPKTILRTMGVKGLTLFHLKSH 319
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,943,593,246
Number of Sequences: 438736
Number of extensions: 57314306
Number of successful extensions: 282854
Number of sequences better than 1.0e-020: 36
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 122583593295
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)