TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA... 146 2e-033
dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA... 146 2e-033
dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA... 146 2e-033
ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA 146 2e-033
ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-... 146 2e-033
ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-... 146 2e-033
dbj|AB122055.1| Oryza sativa (japonica cultivar-group) CCR ... 134 6e-030
dbj|AK104860.1| Oryza sativa (japonica cultivar-group) cDNA... 132 3e-029
dbj|AK067949.1| Oryza sativa (japonica cultivar-group) cDNA... 131 8e-029
gb|AU086004.1|AU086004 AU086004 Rice green shoot Oryza sati... 130 1e-028
gb|AU094766.1|AU094766 AU094766 Rice panicle shorter than 3... 128 4e-028
gb|AACV01018567.1| Oryza sativa (japonica cultivar-group) c... 93 1e-027
dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chro... 93 2e-026
dbj|AP004703.3| Oryza sativa (japonica cultivar-group) geno... 93 2e-026
gb|CB660334.1|CB660334 OSJNEd01P10.r OSJNEd Oryza sativa (j... 122 3e-026
ref|XM_468346.1| Oryza sativa (japonica cultivar-group), mRNA 116 2e-024
ref|NT_107076.1| Oryza sativa (japonica cultivar-group) 114 4e-024
dbj|AP005561.1| Oryza sativa (japonica cultivar-group) chro... 114 1e-023
dbj|AK100234.1| Oryza sativa (japonica cultivar-group) cDNA... 114 1e-023
ref|XM_450149.1| Oryza sativa (japonica cultivar-group), mRNA 114 1e-023
dbj|AP005680.3| Oryza sativa (japonica cultivar-group) geno... 114 1e-023
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 114 1e-023
gb|AU197607.1|AU197607 AU197607 Rice root Oryza sativa (jap... 113 2e-023
gb|AACV01019998.1| Oryza sativa (japonica cultivar-group) c... 81 5e-023
gb|AU184158.1|AU184158 AU184158 Rice root Oryza sativa (jap... 111 7e-023
gb|AU222675.1|AU222675 AU222675 Rice green shoot Oryza sati... 109 2e-022
dbj|AK063935.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-022
dbj|AK119257.1| Oryza sativa (japonica cultivar-group) cDNA... 109 2e-022
ref|XM_468348.1| Oryza sativa (japonica cultivar-group), mRNA 109 2e-022
ref|XM_507038.1| PREDICTED Oryza sativa (japonica cultivar-... 109 2e-022
dbj|AK064401.1| Oryza sativa (japonica cultivar-group) cDNA... 109 3e-022
ref|XM_468316.1| Oryza sativa (japonica cultivar-group), mRNA 109 3e-022
dbj|AP005426.3| Oryza sativa (japonica cultivar-group) geno... 81 4e-022
dbj|AP005429.3| Oryza sativa (japonica cultivar-group) geno... 81 4e-022
ref|XM_468343.1| Oryza sativa (japonica cultivar-group), mRNA 107 1e-021
dbj|AK107149.1| Oryza sativa (japonica cultivar-group) cDNA... 105 4e-021
ref|NM_187717.1| Oryza sativa (japonica cultivar-group), p... 105 4e-021
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 81 9e-021
>dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143B20, full
insert sequence
Length = 1441
Score = 146 bits (314), Expect = 2e-033
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
AAGR++CA++VLHRE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF
Sbjct: 948 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFR 1127
Query: 398 PAAQALYDTVVCFQEKGIL 342
PA+Q+LY+TV C QEKG L
Sbjct: 1128 PASQSLYETVKCLQEKGHL 1184
>dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A12, full
insert sequence
Length = 1423
Score = 146 bits (314), Expect = 2e-033
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
AAGR++CA++VLHRE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF
Sbjct: 947 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFR 1126
Query: 398 PAAQALYDTVVCFQEKGIL 342
PA+Q+LY+TV C QEKG L
Sbjct: 1127 PASQSLYETVKCLQEKGHL 1183
>dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A12, full
insert sequence
Length = 1439
Score = 146 bits (314), Expect = 2e-033
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
AAGR++CA++VLHRE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF
Sbjct: 948 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFR 1127
Query: 398 PAAQALYDTVVCFQEKGIL 342
PA+Q+LY+TV C QEKG L
Sbjct: 1128 PASQSLYETVKCLQEKGHL 1184
>ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1423
Score = 146 bits (314), Expect = 2e-033
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
AAGR++CA++VLHRE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF
Sbjct: 947 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFR 1126
Query: 398 PAAQALYDTVVCFQEKGIL 342
PA+Q+LY+TV C QEKG L
Sbjct: 1127 PASQSLYETVKCLQEKGHL 1183
>ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1 mRNA
Length = 1441
Score = 146 bits (314), Expect = 2e-033
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
AAGR++CA++VLHRE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF
Sbjct: 948 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFR 1127
Query: 398 PAAQALYDTVVCFQEKGIL 342
PA+Q+LY+TV C QEKG L
Sbjct: 1128 PASQSLYETVKCLQEKGHL 1184
>ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1 mRNA
Length = 1439
Score = 146 bits (314), Expect = 2e-033
Identities = 58/79 (73%), Positives = 68/79 (86%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
AAGR++CA++VLHRE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF
Sbjct: 948 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFR 1127
Query: 398 PAAQALYDTVVCFQEKGIL 342
PA+Q+LY+TV C QEKG L
Sbjct: 1128 PASQSLYETVKCLQEKGHL 1184
>dbj|AB122055.1| Oryza sativa (japonica cultivar-group) CCR mRNA for cinnamoyl
coenzyme A reductase, partial cds
Length = 1111
Score = 134 bits (288), Expect = 6e-030
Identities = 53/79 (67%), Positives = 64/79 (81%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ VLHREDVV L K FP YPVP RCSDEVNPRKQPYK+SN++L++LGL F
Sbjct: 634 ASGRYLCAERVLHREDVVHILGKLFPEYPVPTRCSDEVNPRKQPYKMSNKKLQDLGLHFI 813
Query: 398 PAAQALYDTVVCFQEKGIL 342
P + +LY+TV QEKG L
Sbjct: 814 PVSDSLYETVKSLQEKGHL 870
>dbj|AK104860.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D11, full
insert sequence
Length = 1245
Score = 132 bits (283), Expect = 3e-029
Identities = 52/79 (65%), Positives = 64/79 (81%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GR++CA+ VLHREDVV L K FP YPVP RCSDEVNPRKQPYK+SN++L++LGL F
Sbjct: 820 ASGRHLCAERVLHREDVVHILGKLFPEYPVPTRCSDEVNPRKQPYKMSNKKLQDLGLHFI 999
Query: 398 PAAQALYDTVVCFQEKGIL 342
P + +LY+TV QEKG L
Sbjct: 1000 PVSDSLYETVKSLQEKGHL 1056
>dbj|AK067949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128P15, full
insert sequence
Length = 1265
Score = 131 bits (280), Expect = 8e-029
Identities = 51/79 (64%), Positives = 64/79 (81%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GR++CA+ VLHREDVV L K FP YPVP RCSDE+NPRKQPYK+SN++L++LGL F
Sbjct: 821 ASGRHLCAERVLHREDVVHILGKLFPEYPVPTRCSDEMNPRKQPYKMSNKKLQDLGLHFI 1000
Query: 398 PAAQALYDTVVCFQEKGIL 342
P + +LY+TV QEKG L
Sbjct: 1001 PVSDSLYETVKSLQEKGHL 1057
>gb|AU086004.1|AU086004 AU086004 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10974, mRNA sequence
Length = 637
Score = 130 bits (279), Expect = 1e-028
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = -1 / +2
Query: 575 AGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTP 396
+GR++CA+ VLHREDVV L K FP YPVP RCSDEVNPRKQPYK+SN++L++LGL F P
Sbjct: 194 SGRHLCAERVLHREDVVHILGKLFPEYPVPTRCSDEVNPRKQPYKMSNKKLQDLGLHFIP 373
Query: 395 AAQALYDTVVCFQEKGIL 342
+ +LY+TV QEKG L
Sbjct: 374 VSDSLYETVKSLQEKGHL 427
>gb|AU094766.1|AU094766 AU094766 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31533, mRNA sequence
Length = 494
Score = 128 bits (275), Expect = 4e-028
Identities = 52/73 (71%), Positives = 60/73 (82%)
Frame = -1 / +1
Query: 560 CADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQAL 381
CA++VL RE VVR L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+ +L
Sbjct: 1 CAESVLXREGVVRILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASXSL 180
Query: 380 YDTVVCFQEKGIL 342
Y+TV C QEKG L
Sbjct: 181 YETVKCLQEKGHL 219
>gb|AACV01018567.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018567, whole
genome shotgun sequence
Length = 9310
Score = 92.7 bits (196), Expect(2) = 1e-027
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = -1 / +2
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+Q+LY+TV C QEKG L
Sbjct: 6029 RCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHL 6169
Score = 59.3 bits (123), Expect(2) = 1e-027
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
AAGR++CA++VLHRE VVR L K FP YPVP R
Sbjct: 2596 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTR 2694
>dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1244_D07,
*** SEQUENCING IN PROGRESS ***
Length = 104295
Score = 92.7 bits (196), Expect(2) = 2e-026
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = -1 / -2
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+Q+LY+TV C QEKG L
Sbjct: 3713 RCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHL 3573
Score = 59.3 bits (123), Expect(2) = 2e-026
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
AAGR++CA++VLHRE VVR L K FP YPVP R
Sbjct: 7146 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTR 7048
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0528B09
Length = 156897
Score = 92.7 bits (196), Expect(2) = 2e-026
Identities = 36/47 (76%), Positives = 42/47 (89%)
Frame = -1 / -3
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+Q+LY+TV C QEKG L
Sbjct: 103624 RCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHL 103484
Score = 59.3 bits (123), Expect(2) = 2e-026
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
AAGR++CA++VLHRE VVR L K FP YPVP R
Sbjct: 107057 AAGRFLCAESVLHREGVVRILAKLFPEYPVPTR 106959
>gb|CB660334.1|CB660334 OSJNEd01P10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P10 3', mRNA sequence
Length = 686
Score = 122 bits (261), Expect = 3e-026
Identities = 49/79 (62%), Positives = 61/79 (77%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GR++CA+ VLHREDVV L K FP YPVP RC DEVNPRKQPYK+SN++L++LGL F
Sbjct: 352 ASGRHLCAEGVLHREDVVHILGKIFPEYPVPTRCFDEVNPRKQPYKMSNKKLQDLGLHFI 173
Query: 398 PAAQALYDTVVCFQEKGIL 342
P + +L + V QEKG L
Sbjct: 172 PVSDSL*EPVKSLQEKGHL 116
>ref|XM_468346.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1065
Score = 116 bits (248), Expect = 2e-024
Identities = 44/79 (55%), Positives = 57/79 (72%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C AVLHR +++ L++ FP YPV +C D+ NP +PYK SNQRL++LG EFT
Sbjct: 766 ARGRYLCIGAVLHRAHLLQMLKELFPQYPVTSKCKDDGNPMVEPYKFSNQRLKDLGFEFT 945
Query: 398 PAAQALYDTVVCFQEKGIL 342
P + LYD VVC Q+KG L
Sbjct: 946 PMRKCLYDAVVCMQQKGHL 1002
>ref|NT_107076.1| Oryza sativa (japonica cultivar-group)
Length = 2702857
Score = 114 bits (243), Expect(2) = 4e-024
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRYICA++ LHR D+ R L K FP YPVP RC DE P + Y SNQRLR+LG++F
Sbjct: 2032143 ARGRYICAESTLHRGDLCRALAKLFPEYPVPSRCKDEAAPPVKGYLFSNQRLRDLGMDFV 2031964
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LY+TV Q+KG+L
Sbjct: 2031963 PVRQCLYETVRSLQDKGLL 2031907
Score = 34.1 bits (68), Expect(2) = 4e-024
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -1 / -2
Query: 194 MWSVCYSLWA*ECQKSAAVTISMRLFICCYIMC 96
MW + + LW C + + + FICC++ C
Sbjct: 1797519 MWKLFHGLWKSSCLLNTISFLFFQQFICCFLAC 1797421
>dbj|AP005561.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone OJ1189_B05,
*** SEQUENCING IN PROGRESS ***
Length = 164669
Score = 114 bits (243), Expect = 1e-023
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRYICA++ LHR D+ R L K FP YPVP RC DE P + Y SNQRLR+LG++F
Sbjct: 35749 ARGRYICAESTLHRGDLCRALAKLFPEYPVPSRCKDEAAPPVKGYLFSNQRLRDLGMDFV 35928
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LY+TV Q+KG+L
Sbjct: 35929 PVRQCLYETVRSLQDKGLL 35985
>dbj|AK100234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051O20, full
insert sequence
Length = 1612
Score = 114 bits (243), Expect = 1e-023
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRYICA++ LHR D+ R L K FP YPVP RC DE P + Y SNQRLR+LG++F
Sbjct: 966 ARGRYICAESTLHRGDLCRALAKLFPEYPVPSRCKDEAAPPVKGYLFSNQRLRDLGMDFV 1145
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LY+TV Q+KG+L
Sbjct: 1146 PVRQCLYETVRSLQDKGLL 1202
>ref|XM_450149.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1614
Score = 114 bits (243), Expect = 1e-023
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRYICA++ LHR D+ R L K FP YPVP RC DE P + Y SNQRLR+LG++F
Sbjct: 966 ARGRYICAESTLHRGDLCRALAKLFPEYPVPSRCKDEAAPPVKGYLFSNQRLRDLGMDFV 1145
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LY+TV Q+KG+L
Sbjct: 1146 PVRQCLYETVRSLQDKGLL 1202
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1352_A10
Length = 111655
Score = 114 bits (243), Expect = 1e-023
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRYICA++ LHR D+ R L K FP YPVP RC DE P + Y SNQRLR+LG++F
Sbjct: 66174 ARGRYICAESTLHRGDLCRALAKLFPEYPVPSRCKDEAAPPVKGYLFSNQRLRDLGMDFV 65995
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LY+TV Q+KG+L
Sbjct: 65994 PVRQCLYETVRSLQDKGLL 65938
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 114 bits (243), Expect = 1e-023
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRYICA++ LHR D+ R L K FP YPVP RC DE P + Y SNQRLR+LG++F
Sbjct: 2030807 ARGRYICAESTLHRGDLCRALAKLFPEYPVPSRCKDEAAPPVKGYLFSNQRLRDLGMDFV 2030628
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LY+TV Q+KG+L
Sbjct: 2030627 PVRQCLYETVRSLQDKGLL 2030571
>gb|AU197607.1|AU197607 AU197607 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1554, mRNA sequence
Length = 449
Score = 113 bits (241), Expect = 2e-023
Identities = 45/61 (73%), Positives = 51/61 (83%)
Frame = -1 / +1
Query: 524 RTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGI 345
R L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+Q+LY+TV C QEKG
Sbjct: 1 RILAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGH 180
Query: 344 L 342
L
Sbjct: 181 L 183
>gb|AACV01019998.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019998, whole
genome shotgun sequence
Length = 21483
Score = 80.8 bits (170), Expect(2) = 5e-023
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -1 / +3
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDEVNPRKQPYK+SN++L++LGL F P + +LY+TV QEKG L
Sbjct: 18324 RCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKSLQEKGHL 18464
Score = 57.0 bits (118), Expect(2) = 5e-023
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
A+GR++CA+ VLHREDVV L K FP YPVP R
Sbjct: 17070 ASGRHLCAERVLHREDVVHILGKLFPEYPVPTR 17168
>gb|AU184158.1|AU184158 AU184158 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1430, mRNA sequence
Length = 446
Score = 111 bits (237), Expect = 7e-023
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = -1 / +1
Query: 518 LRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
L K FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+Q+LY+TV C QEKG L
Sbjct: 4 LAKLFPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHL 180
>gb|AU222675.1|AU222675 AU222675 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11643, mRNA sequence
Length = 444
Score = 109 bits (233), Expect = 2e-022
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = -1 / +3
Query: 506 FPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
FP YPVP RCSDE NPRKQPYK+SNQ+LR+LGLEF PA+Q+LY+TV C QEKG L
Sbjct: 3 FPEYPVPTRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGXL 167
>dbj|AK063935.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D09, full
insert sequence
Length = 1560
Score = 109 bits (233), Expect = 2e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C V+HR +++R L++ FP YPV +C DE N +PYK SNQRLR+LGLEFT
Sbjct: 893 ARGRYLCIGTVIHRAELLRMLKELFPQYPVTSKCEDEGNQMVKPYKFSNQRLRDLGLEFT 1072
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++ + C Q KG L
Sbjct: 1073 PLRKSLHEAIECLQRKGHL 1129
>dbj|AK119257.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-H06, full
insert sequence
Length = 1454
Score = 109 bits (233), Expect = 2e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C V+HR +++R L++ FP YPV +C DE N +PYK SNQRLR+LGLEFT
Sbjct: 895 ARGRYLCIGTVIHRAELLRMLKELFPQYPVTSKCEDEGNQMVKPYKFSNQRLRDLGLEFT 1074
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++ + C Q KG L
Sbjct: 1075 PLRKSLHEAIECLQRKGHL 1131
>ref|XM_468348.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1454
Score = 109 bits (233), Expect = 2e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C V+HR +++R L++ FP YPV +C DE N +PYK SNQRLR+LGLEFT
Sbjct: 895 ARGRYLCIGTVIHRAELLRMLKELFPQYPVTSKCEDEGNQMVKPYKFSNQRLRDLGLEFT 1074
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++ + C Q KG L
Sbjct: 1075 PLRKSLHEAIECLQRKGHL 1131
>ref|XM_507038.1| PREDICTED Oryza sativa (japonica cultivar-group), P0016F11.25 mRNA
Length = 1560
Score = 109 bits (233), Expect = 2e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C V+HR +++R L++ FP YPV +C DE N +PYK SNQRLR+LGLEFT
Sbjct: 893 ARGRYLCIGTVIHRAELLRMLKELFPQYPVTSKCEDEGNQMVKPYKFSNQRLRDLGLEFT 1072
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++ + C Q KG L
Sbjct: 1073 PLRKSLHEAIECLQRKGHL 1129
>dbj|AK064401.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H04, full
insert sequence
Length = 1428
Score = 109 bits (232), Expect = 3e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR +++R LR+ FP YP +C D+ P +PYK SNQRL++LGLEFT
Sbjct: 864 ARGRYLCIGTVLHRAELLRMLRELFPRYPATAKCEDDGKPMAKPYKFSNQRLKDLGLEFT 1043
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L + V+C Q+KG L
Sbjct: 1044 PLRKSLNEAVLCMQQKGHL 1100
>ref|XM_468316.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1428
Score = 109 bits (232), Expect = 3e-022
Identities = 41/79 (51%), Positives = 56/79 (70%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR +++R LR+ FP YP +C D+ P +PYK SNQRL++LGLEFT
Sbjct: 864 ARGRYLCIGTVLHRAELLRMLRELFPRYPATAKCEDDGKPMAKPYKFSNQRLKDLGLEFT 1043
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L + V+C Q+KG L
Sbjct: 1044 PLRKSLNEAVLCMQQKGHL 1100
>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0668D04
Length = 148848
Score = 80.8 bits (170), Expect(2) = 4e-022
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -1 / -2
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDEVNPRKQPYK+SN++L++LGL F P + +LY+TV QEKG L
Sbjct: 13598 RCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKSLQEKGHL 13458
Score = 57.0 bits (118), Expect(2) = 4e-022
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
A+GR++CA+ VLHREDVV L K FP YPVP R
Sbjct: 14852 ASGRHLCAERVLHREDVVHILGKLFPEYPVPTR 14754
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0701F11
Length = 154950
Score = 80.8 bits (170), Expect(2) = 4e-022
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -1 / -1
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDEVNPRKQPYK+SN++L++LGL F P + +LY+TV QEKG L
Sbjct: 91401 RCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKSLQEKGHL 91261
Score = 57.0 bits (118), Expect(2) = 4e-022
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1 / -1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
A+GR++CA+ VLHREDVV L K FP YPVP R
Sbjct: 92655 ASGRHLCAERVLHREDVVHILGKLFPEYPVPTR 92557
>ref|XM_468343.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1014
Score = 107 bits (228), Expect = 1e-021
Identities = 40/79 (50%), Positives = 55/79 (69%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C VLHR +++R LR FP YP +C D+ P +PYK SNQRL++LGLEFT
Sbjct: 739 ARGRYLCIGTVLHRAELLRMLRDLFPQYPATAKCEDDGKPMAKPYKFSNQRLKDLGLEFT 918
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++L++ V+C Q+K L
Sbjct: 919 PLRKSLHEAVLCMQQKSHL 975
>dbj|AK107149.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-D12, full
insert sequence
Length = 1227
Score = 105 bits (224), Expect = 4e-021
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C +VLHR + VR LR+ FP YP+ RC D P +PYK S QRL LG++FT
Sbjct: 809 ARGRYLCIGSVLHRSEFVRLLRELFPQYPITSRCKDNSKPMVKPYKFSVQRLETLGMQFT 988
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY TV+ Q+KG L
Sbjct: 989 PLKESLYRTVISLQDKGHL 1045
>ref|NM_187717.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 987
Score = 105 bits (224), Expect = 4e-021
Identities = 41/79 (51%), Positives = 53/79 (67%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A GRY+C +VLHR + VR LR+ FP YP+ RC D P +PYK S QRL LG++FT
Sbjct: 718 ARGRYLCIGSVLHRSEFVRLLRELFPQYPITSRCKDNSKPMVKPYKFSVQRLETLGMQFT 897
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++LY TV+ Q+KG L
Sbjct: 898 PLKESLYRTVISLQDKGHL 954
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 80.8 bits (170), Expect(2) = 9e-021
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -1 / -3
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDEVNPRKQPYK+SN++L++LGL F P + +LY+TV QEKG L
Sbjct: 713758 RCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKSLQEKGHL 713618
Score = 57.0 bits (118), Expect(2) = 9e-021
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
A+GR++CA+ VLHREDVV L K FP YPVP R
Sbjct: 715012 ASGRHLCAERVLHREDVVHILGKLFPEYPVPTR 714914
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,308,331,326
Number of Sequences: 438736
Number of extensions: 50151389
Number of successful extensions: 352794
Number of sequences better than 1.0e-020: 45
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 122583593295
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)