TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.2
(562 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA... 195 4e-048
dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA... 195 4e-048
dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA... 189 2e-046
ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA 189 2e-046
ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-... 189 2e-046
dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA... 187 1e-045
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 111 1e-039
gb|AC133008.3| Oryza sativa (japonica cultivar-group) chrom... 111 1e-039
gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) c... 111 1e-039
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 110 8e-038
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 110 8e-038
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 110 9e-038
gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) c... 110 9e-038
gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (ja... 140 9e-032
gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (jap... 112 2e-023
gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (jap... 112 2e-023
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-023
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 111 6e-023
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-023
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 110 1e-022
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 110 1e-022
>dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H12, full
insert sequence
Length = 1173
Score = 195 bits (420), Expect = 4e-048
Identities = 76/89 (85%), Positives = 76/89 (85%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGSDFHDY
Sbjct: 605 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDY 784
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHRVLYTKSGNYASTFVYMDWLF TD Y
Sbjct: 785 HHRVLYTKSGNYASTFVYMDWLFGTDKDY 871
Score = 128 bits (274), Expect = 5e-028
Identities = 63/86 (73%), Positives = 66/86 (76%)
Frame = +1 / -1
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N+QSM*T VEA*FPD V STR* *S KSEPPYSG+KFDGLHGK PL*ASTV TL
Sbjct: 861 SVPNSQSM*TKVEA*FPDLV*STR***S*KSEPPYSGKKFDGLHGKWYPL*ASTVSNTLN 682
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T SH VN+ GPV A VANPRNK
Sbjct: 681 TIHSHRVNKCGPVRAGPTIVANPRNK 604
Score = 123 bits (264), Expect = 1e-026
Identities = 49/94 (52%), Positives = 67/94 (71%)
Frame = +3 / -3
Query: 267 SLCLAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRATVQWKEI*WAPWKVIAAVS 446
SL +A+ +VR +QPVHVNK RG+V * V+H+VM+VM+V A++QW+EI*WAPW++++ VS
Sbjct: 886 SLGIAVILVRAKQPVHVNKSRGVVS*FGVEHTVMIVMKVGASIQWQEI*WAPWEMVSTVS 707
Query: 447 LXRXXYPXXHXQPXXEQMRXSXSXXXXCGESQEQ 548
YP H QP EQ+R S CGE +EQ
Sbjct: 706 FNCLQYPQHHPQP*SEQVRTSEGRTNNCGEPKEQ 605
>dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J20, full
insert sequence
Length = 1223
Score = 195 bits (420), Expect = 4e-048
Identities = 76/89 (85%), Positives = 76/89 (85%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGGSDFHDY
Sbjct: 561 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDY 740
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHRVLYTKSGNYASTFVYMDWLF TD Y
Sbjct: 741 HHRVLYTKSGNYASTFVYMDWLFGTDKDY 827
Score = 128 bits (274), Expect = 5e-028
Identities = 63/86 (73%), Positives = 66/86 (76%)
Frame = +1 / -2
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N+QSM*T VEA*FPD V STR* *S KSEPPYSG+KFDGLHGK PL*ASTV TL
Sbjct: 817 SVPNSQSM*TKVEA*FPDLV*STR***S*KSEPPYSGKKFDGLHGKWYPL*ASTVSNTLN 638
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T SH VN+ GPV A VANPRNK
Sbjct: 637 TIHSHRVNKCGPVRAGPTIVANPRNK 560
Score = 123 bits (264), Expect = 1e-026
Identities = 49/94 (52%), Positives = 67/94 (71%)
Frame = +3 / -1
Query: 267 SLCLAITIVRPEQPVHVNKCRGIVP*LCVQHSVMVVMEVRATVQWKEI*WAPWKVIAAVS 446
SL +A+ +VR +QPVHVNK RG+V * V+H+VM+VM+V A++QW+EI*WAPW++++ VS
Sbjct: 842 SLGIAVILVRAKQPVHVNKSRGVVS*FGVEHTVMIVMKVGASIQWQEI*WAPWEMVSTVS 663
Query: 447 LXRXXYPXXHXQPXXEQMRXSXSXXXXCGESQEQ 548
YP H QP EQ+R S CGE +EQ
Sbjct: 662 FNCLQYPQHHPQP*SEQVRTSEGRTNNCGEPKEQ 561
>dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F03, full
insert sequence
Length = 1146
Score = 189 bits (407), Expect = 2e-046
Identities = 71/89 (79%), Positives = 76/89 (85%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG++FHDY
Sbjct: 555 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDY 734
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHRVLYTKSGNY+STF+YMDWLF TD Y
Sbjct: 735 HHRVLYTKSGNYSSTFIYMDWLFGTDKDY 821
Score = 110 bits (235), Expect = 1e-022
Identities = 53/86 (61%), Positives = 60/86 (69%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N+QSM* V+ *FPD V TR* *SW S PPY+G+K DGLHGK *PL*ASTV TL
Sbjct: 811 SVPNSQSM*MKVDE*FPDLV*RTR***SWNSAPPYNGKKLDGLHGKW*PL*ASTVSKTLK 632
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA P+N+
Sbjct: 631 TIHTQRVKR*GPVRAGPATVAKPKNR 554
>ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1146
Score = 189 bits (407), Expect = 2e-046
Identities = 71/89 (79%), Positives = 76/89 (85%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG++FHDY
Sbjct: 555 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDY 734
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHRVLYTKSGNY+STF+YMDWLF TD Y
Sbjct: 735 HHRVLYTKSGNYSSTFIYMDWLFGTDKDY 821
Score = 110 bits (235), Expect = 1e-022
Identities = 53/86 (61%), Positives = 60/86 (69%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N+QSM* V+ *FPD V TR* *SW S PPY+G+K DGLHGK *PL*ASTV TL
Sbjct: 811 SVPNSQSM*MKVDE*FPDLV*RTR***SWNSAPPYNGKKLDGLHGKW*PL*ASTVSKTLK 632
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA P+N+
Sbjct: 631 TIHTQRVKR*GPVRAGPATVAKPKNR 554
>ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.22 mRNA
Length = 1337
Score = 189 bits (407), Expect = 2e-046
Identities = 71/89 (79%), Positives = 76/89 (85%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG++FHDY
Sbjct: 554 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDY 733
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHRVLYTKSGNY+STF+YMDWLF TD Y
Sbjct: 734 HHRVLYTKSGNYSSTFIYMDWLFGTDKDY 820
Score = 110 bits (235), Expect = 1e-022
Identities = 53/86 (61%), Positives = 60/86 (69%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N+QSM* V+ *FPD V TR* *SW S PPY+G+K DGLHGK *PL*ASTV TL
Sbjct: 810 SVPNSQSM*MKVDE*FPDLV*RTR***SWNSAPPYNGKKLDGLHGKW*PL*ASTVSKTLK 631
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA P+N+
Sbjct: 630 TIHTQRVKR*GPVRAGPATVAKPKNR 553
>dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L07, full
insert sequence
Length = 1337
Score = 187 bits (402), Expect = 1e-045
Identities = 70/89 (78%), Positives = 75/89 (84%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGGSDFHDY 369
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG++FHDY
Sbjct: 554 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDY 733
Query: 368 HHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
HHRVLYTK GNY+STF+YMDWLF TD Y
Sbjct: 734 HHRVLYTKPGNYSSTFIYMDWLFGTDKDY 820
Score = 107 bits (228), Expect = 1e-021
Identities = 52/86 (60%), Positives = 59/86 (68%)
Frame = +1 / -3
Query: 292 SVRNNQSM*TNVEA*FPDFVYSTR*W*SWKSEPPYSGRKFDGLHGK**PL*ASTVXXTLX 471
SV N+QSM* V+ *FP V TR* *SW S PPY+G+K DGLHGK *PL*ASTV TL
Sbjct: 810 SVPNSQSM*MKVDE*FPGLV*RTR***SWNSAPPYNGKKLDGLHGKW*PL*ASTVSKTLK 631
Query: 472 TXXSHXVNR*GPVXAXXXXVANPRNK 549
T + V R*GPV A VA P+N+
Sbjct: 630 TIHTQRVKR*GPVRAGPATVAKPKNR 553
>gb|CH401271.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000108
genomic scaffold, whole genome shotgun sequence
Length = 327658
Score = 111 bits (237), Expect(2) = 1e-039
Identities = 44/54 (81%), Positives = 44/54 (81%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 295627 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 295466
Score = 86.3 bits (182), Expect(2) = 6e-023
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +1 / +3
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRNK 549
PPYSG+KFDGLHGK PL*ASTV TL T SH VN+ GPV A VANPRNK
Sbjct: 295467 PPYSGKKFDGLHGKWYPL*ASTVSNTLNTIHSHRVNKCGPVRAGPTIVANPRNK 295628
Score = 75.3 bits (158), Expect(2) = 1e-039
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -3 / -3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
SDFHDYHHRVLYTKSGNYASTFVYMDW
Sbjct: 295379 SDFHDYHHRVLYTKSGNYASTFVYMDW 295299
Score = 44.6 bits (91), Expect(2) = 6e-023
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / +3
Query: 306 PVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
PVHVNK RG+V * V+H+VM+VM+V A
Sbjct: 295299 PVHVNKSRGVVS*FGVEHTVMIVMKVGA 295382
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0026K20 map S10559, complete sequence
Length = 115996
Score = 111 bits (237), Expect(2) = 1e-039
Identities = 44/54 (81%), Positives = 44/54 (81%)
Frame = -3 / -3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 50642 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 50481
Score = 86.3 bits (182), Expect(2) = 6e-023
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +1 / +1
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRNK 549
PPYSG+KFDGLHGK PL*ASTV TL T SH VN+ GPV A VANPRNK
Sbjct: 50482 PPYSGKKFDGLHGKWYPL*ASTVSNTLNTIHSHRVNKCGPVRAGPTIVANPRNK 50643
Score = 75.3 bits (158), Expect(2) = 1e-039
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -3 / -2
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
SDFHDYHHRVLYTKSGNYASTFVYMDW
Sbjct: 50394 SDFHDYHHRVLYTKSGNYASTFVYMDW 50314
Score = 44.6 bits (91), Expect(2) = 6e-023
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / +1
Query: 306 PVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
PVHVNK RG+V * V+H+VM+VM+V A
Sbjct: 50314 PVHVNKSRGVVS*FGVEHTVMIVMKVGA 50397
>gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023822, whole
genome shotgun sequence
Length = 11245
Score = 111 bits (237), Expect(2) = 1e-039
Identities = 44/54 (81%), Positives = 44/54 (81%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 8431 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 8270
Score = 86.3 bits (182), Expect(2) = 6e-023
Identities = 38/54 (70%), Positives = 40/54 (74%)
Frame = +1 / +3
Query: 388 PPYSGRKFDGLHGK**PL*ASTVXXTLXTXXSHXVNR*GPVXAXXXXVANPRNK 549
PPYSG+KFDGLHGK PL*ASTV TL T SH VN+ GPV A VANPRNK
Sbjct: 8271 PPYSGKKFDGLHGKWYPL*ASTVSNTLNTIHSHRVNKCGPVRAGPTIVANPRNK 8432
Score = 75.3 bits (158), Expect(2) = 1e-039
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -3 / -3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
SDFHDYHHRVLYTKSGNYASTFVYMDW
Sbjct: 8183 SDFHDYHHRVLYTKSGNYASTFVYMDW 8103
Score = 44.6 bits (91), Expect(2) = 6e-023
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3 / +3
Query: 306 PVHVNKCRGIVP*LCVQHSVMVVMEVRA 389
PVHVNK RG+V * V+H+VM+VM+V A
Sbjct: 8103 PVHVNKSRGVVS*FGVEHTVMIVMKVGA 8186
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 110 bits (235), Expect(2) = 8e-038
Identities = 43/54 (79%), Positives = 44/54 (81%)
Frame = -3 / +2
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 87974 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 88135
Score = 70.3 bits (147), Expect(2) = 8e-038
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / +2
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 88232 AEFHDYHHRVLYTKSGNYSSTFIYMDW 88312
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 110 bits (235), Expect(2) = 8e-038
Identities = 43/54 (79%), Positives = 44/54 (81%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 80031 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 80192
Score = 70.3 bits (147), Expect(2) = 8e-038
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / +3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 80289 AEFHDYHHRVLYTKSGNYSSTFIYMDW 80369
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 110 bits (235), Expect(2) = 9e-038
Identities = 43/54 (79%), Positives = 44/54 (81%)
Frame = -3 / +1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 87976 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 88137
Score = 70.3 bits (147), Expect(2) = 9e-038
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / +1
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 88234 AEFHDYHHRVLYTKSGNYSSTFIYMDW 88314
>gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014992, whole
genome shotgun sequence
Length = 12136
Score = 110 bits (235), Expect(2) = 9e-038
Identities = 43/54 (79%), Positives = 44/54 (81%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 10332 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 10493
Score = 70.3 bits (147), Expect(2) = 9e-038
Identities = 23/27 (85%), Positives = 27/27 (100%)
Frame = -3 / +3
Query: 386 SDFHDYHHRVLYTKSGNYASTFVYMDW 306
++FHDYHHRVLYTKSGNY+STF+YMDW
Sbjct: 10590 AEFHDYHHRVLYTKSGNYSSTFIYMDW 10670
>gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61906_1A, mRNA sequence
Length = 390
Score = 140 bits (301), Expect = 9e-032
Identities = 50/58 (86%), Positives = 54/58 (93%)
Frame = -3 / +2
Query: 455 TVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
TVEAHSGYHFPWSPSNFLPLYGG++FHDYHHRVLYTKSGNY+STF+YMDWLF T Y
Sbjct: 5 TVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDWLFGTXKDY 178
>gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1956, mRNA sequence
Length = 449
Score = 112 bits (240), Expect = 2e-023
Identities = 42/45 (93%), Positives = 42/45 (93%)
Frame = -3 / +2
Query: 416 PSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
PSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLF TD Y
Sbjct: 2 PSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDY 136
>gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3165, mRNA sequence
Length = 449
Score = 112 bits (240), Expect = 2e-023
Identities = 42/45 (93%), Positives = 42/45 (93%)
Frame = -3 / +2
Query: 416 PSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFRTDNGY 282
PSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLF TD Y
Sbjct: 2 PSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMDWLFGTDKDY 136
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 111 bits (237), Expect = 6e-023
Identities = 44/54 (81%), Positives = 44/54 (81%)
Frame = -3 / -1
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 22561518 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 22561357
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 111 bits (237), Expect = 6e-023
Identities = 44/54 (81%), Positives = 44/54 (81%)
Frame = -3 / -3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 28323904 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 28323743
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 111 bits (237), Expect = 6e-023
Identities = 44/54 (81%), Positives = 44/54 (81%)
Frame = -3 / -3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT WL MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 28306353 LFLGFATIVGPALTGPHLFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 28306192
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome
shotgun sequence
Length = 28626509
Score = 110 bits (235), Expect = 1e-022
Identities = 43/54 (79%), Positives = 44/54 (81%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 80031 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 80192
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 110 bits (235), Expect = 1e-022
Identities = 43/54 (79%), Positives = 44/54 (81%)
Frame = -3 / +3
Query: 548 LFLGFATXXXXAXTGPHLFTXWLXMVXRVXXTVEAHSGYHFPWSPSNFLPLYGG 387
LFLGFAT A TGPHLFT W+ MV RV TVEAHSGYHFPWSPSNFLPLYGG
Sbjct: 88677 LFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGG 88838
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,060,349,998
Number of Sequences: 438736
Number of extensions: 41220463
Number of successful extensions: 225251
Number of sequences better than 1.0e-020: 31
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 116227406976
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)