TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA... 195 4e-048
dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA... 195 4e-048
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 195 4e-048
ref|XM_474061.1| Oryza sativa (japonica cultivar-group), p... 195 4e-048
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 195 4e-048
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 195 4e-048
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 195 4e-048
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 195 4e-048
emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromoso... 195 4e-048
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 195 4e-048
>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
insert sequence
Length = 1746
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / +1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 1123 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 1302
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 1303 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 1428
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / -2
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 1424 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 1245
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 1244 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 1122
Score = 111 bits (236), Expect(2) = 8e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / -1
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 1419 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 1246
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / +2
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 1262 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 1378
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / +3
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 1125 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 1253
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 1377 PHAARRRPQAHAQ 1415
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / -1
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 1194 PAGHPAGVPHAEVDVEGQAPA 1132
>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
insert sequence
Length = 2821
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / +2
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 2162 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 2341
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 2342 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 2467
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / -2
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 2463 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 2284
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 2283 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 2161
Score = 111 bits (236), Expect(2) = 8e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / -1
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 2458 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 2285
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / +3
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 2301 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 2417
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / +1
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 2164 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 2292
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / +1
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 2416 PHAARRRPQAHAQ 2454
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / -1
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 2233 PAGHPAGVPHAEVDVEGQAPA 2171
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 16596 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 16417
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 16416 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 16291
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +2
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 16295 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 16474
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 16475 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 16597
Score = 111 bits (236), Expect(2) = 8e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +1
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 16300 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 16473
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / -2
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 16457 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 16341
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / -3
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 16594 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 16466
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 16342 PHAARRRPQAHAQ 16304
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / +1
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 16525 PAGHPAGVPHAEVDVEGQAPA 16587
>ref|XM_474061.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2298
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / +1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 1993 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 2172
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 2173 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 2298
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / -2
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 2294 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 2115
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 2114 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 1992
Score = 111 bits (236), Expect(2) = 8e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / -1
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 2289 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 2116
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / +2
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 2132 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 2248
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / +3
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 1995 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 2123
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 2247 PHAARRRPQAHAQ 2285
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / -1
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 2064 PAGHPAGVPHAEVDVEGQAPA 2002
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 18704 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 18525
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 18524 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 18399
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +1
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 18403 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 18582
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 18583 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 18705
Score = 111 bits (236), Expect(2) = 7e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +3
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 18408 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 18581
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / -2
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 18565 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 18449
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / -3
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 18702 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 18574
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 18450 PHAARRRPQAHAQ 18412
Score = 26.7 bits (52), Expect(2) = 7e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / +3
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 18633 PAGHPAGVPHAEVDVEGQAPA 18695
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -3
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 10307467 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 10307288
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 10307287 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 10307162
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +3
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 10307166 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 10307345
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 10307346 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 10307468
Score = 111 bits (236), Expect = 1e-022
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +2
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 10307171 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 10307344
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / -1
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 10307328 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 10307212
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / -2
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 10307465 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 10307337
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / -2
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 10307213 PHAARRRPQAHAQ 10307175
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -3
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 29451566 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 29451387
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 29451386 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 29451261
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +1
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 29451265 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 29451444
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 29451445 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 29451567
Score = 111 bits (236), Expect = 1e-022
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +3
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 29451270 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 29451443
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 18704 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 18525
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 18524 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 18399
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +1
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 18403 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 18582
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 18583 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 18705
Score = 111 bits (236), Expect(2) = 8e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +3
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 18408 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 18581
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / -2
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 18565 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 18449
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / -3
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 18702 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 18574
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 18450 PHAARRRPQAHAQ 18412
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / +3
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 18633 PAGHPAGVPHAEVDVEGQAPA 18695
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
complete sequence
Length = 153643
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 142417 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 142238
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 142237 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 142112
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +3
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 142116 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 142295
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 142296 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 142418
Score = 111 bits (236), Expect(2) = 8e-025
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +2
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 142121 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 142294
Score = 90.4 bits (191), Expect(3) = 1e-034
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3 / -2
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSP R AWWRSRWTCART AS TS ATGRWRWAA
Sbjct: 142278 SRRCRWSPARPAWWRSRWTCART*ASSTSSATGRWRWAA 142162
Score = 66.1 bits (138), Expect(3) = 1e-034
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = -1 / -3
Query: 709 RALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
RALR P ++R PP AER + RRAH VP+LVAA GAQRAGEAP
Sbjct: 142415 RALREPVLRRPPPRAERRRDGRRAHRVPLLVAAVGAQRAGEAP 142287
Score = 32.2 bits (64), Expect(3) = 1e-034
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = -1 / -3
Query: 457 PHAARRGPQAHAQ 419
PHAARR PQAHAQ
Sbjct: 142163 PHAARRRPQAHAQ 142125
Score = 26.7 bits (52), Expect(2) = 8e-025
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 640 PAGPSARVPHPEGHVERQALA 702
PAG A VPH E VE QA A
Sbjct: 142346 PAGHPAGVPHAEVDVEGQAPA 142408
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 195 bits (421), Expect = 4e-048
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = -2 / -1
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C L+F+V LRVRNAG +GG TVFLFSSPP+V +APAK LLGFEKVSLEPGQAGVV
Sbjct: 32623683 GEHCGSLSFDVHLRVRNAGGMAGGHTVFLFSSPPSVHSAPAKHLLGFEKVSLEPGQAGVV 32623504
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL V*
Sbjct: 32623503 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLRV* 32623378
Score = 127 bits (273), Expect = 1e-027
Identities = 58/101 (57%), Positives = 61/101 (60%)
Frame = +2 / +2
Query: 410 TPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSRGF 589
T +LSVCLRSPTCSVW NATTPA PGSSDTFS PSR F
Sbjct: 32623382 TLRLSVCLRSPTCSVWLPSATFRLPSSSTTLRSLHTSTLNATTPAWPGSSDTFSNPSRCF 32623561
Query: 590 AGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
AGAL T GGDE RNTV PP + PAFRTRR T R Q +P
Sbjct: 32623562 AGALCTDGGDEKRNTVCPPAIPPAFRTRRWTSKDRLPQCSP 32623684
Score = 111 bits (236), Expect = 1e-022
Identities = 48/58 (82%), Positives = 51/58 (87%)
Frame = +1 / +1
Query: 415 QVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQGL 588
QVERVLEV DVQRVAAQRHLPVA+LV DA+VLAHVHLERHHA L GLQRHL E +Q L
Sbjct: 32623387 QVERVLEVADVQRVAAQRHLPVAELVDDAQVLAHVHLERHHAGLAGLQRHLLEPEQVL 32623560
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,488,988,687
Number of Sequences: 438736
Number of extensions: 73025411
Number of successful extensions: 951439
Number of sequences better than 1.0e-020: 15
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 161550642818
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)