TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (j... 116 3e-029
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 116 3e-028
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 116 4e-028
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 116 4e-028
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 116 6e-027
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 116 1e-025
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 116 1e-025
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 116 1e-025
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 116 2e-025
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 116 3e-024
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 116 3e-024
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 116 3e-024
>gb|CB645780.1|CB645780 OSJNEb07L24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 3', mRNA sequence
Length = 735
Score = 116 bits (247), Expect(4) = 2e-027
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / -3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 586 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 416
Score = 110 bits (234), Expect(5) = 3e-029
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / +3
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 420 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 584
Score = 25.4 bits (49), Expect(5) = 3e-029
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2 / +2
Query: 149 P*DPTNA*LAGDKRRPTSVNLQ 214
P P A LAGD RRP S+ Q
Sbjct: 110 PIRPNFAILAGDTRRPLSIKPQ 175
Score = 24.9 bits (48), Expect(5) = 3e-029
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1 / +2
Query: 217 QPYHHFQFQNNQAKRYHTN 273
QPYHHFQ + + TN
Sbjct: 173 QPYHHFQSLAKRYHKSSTN 229
Score = 24.4 bits (47), Expect(5) = 3e-029
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +1
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 580 PSCATGPAT 606
Score = 24.4 bits (47), Expect(4) = 2e-027
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / -1
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 375 GPCWEVPLFYDW 340
Score = 21.7 bits (41), Expect(4) = 2e-027
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2 / -3
Query: 244 FGIGSGGKAGLQINGGRPPFITRQLSICG 158
FG G L ++ RPP ITRQ S G
Sbjct: 205 FG*GLEVVVRLWLD*QRPPCITRQNSKIG 119
Score = 21.7 bits (41), Expect(5) = 3e-029
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1 / +1
Query: 268 TNQANTSTTKPALILG 315
T ++ ++TKP LILG
Sbjct: 244 TTTSSDTSTKPMLILG 291
Score = 21.7 bits (41), Expect(4) = 2e-027
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / -1
Query: 664 GRPCRALG 641
GRPCRA G
Sbjct: 603 GRPCRATG 580
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 116 bits (247), Expect(4) = 1e-026
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 795 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 965
Score = 110 bits (234), Expect(5) = 3e-028
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 961 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 797
Score = 25.4 bits (49), Expect(5) = 3e-028
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2 / -1
Query: 149 P*DPTNA*LAGDKRRPTSVNLQ 214
P P A LAGD RRP S+ Q
Sbjct: 1271 PIRPNFAILAGDTRRPLSIKPQ 1206
Score = 24.9 bits (48), Expect(5) = 3e-028
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1 / -1
Query: 217 QPYHHFQFQNNQAKRYHTN 273
QPYHHFQ + + TN
Sbjct: 1208 QPYHHFQSLAKRYHKSSTN 1152
Score = 24.4 bits (47), Expect(4) = 1e-026
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +1
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 1006 GPCWEVPLFYDW 1041
Score = 24.4 bits (47), Expect(5) = 3e-028
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 801 PSCATGPAT 775
Score = 21.7 bits (41), Expect(4) = 1e-026
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2 / +3
Query: 244 FGIGSGGKAGLQINGGRPPFITRQLSICG 158
FG G L ++ RPP ITRQ S G
Sbjct: 1176 FG*GLEVVVRLWLD*QRPPCITRQNSKIG 1262
Score = 21.7 bits (41), Expect(4) = 1e-026
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +1
Query: 664 GRPCRALG 641
GRPCRA G
Sbjct: 778 GRPCRATG 801
Score = 21.7 bits (41), Expect(5) = 3e-028
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1 / -3
Query: 268 TNQANTSTTKPALILG 315
T ++ ++TKP LILG
Sbjct: 1137 TTTSSDTSTKPMLILG 1090
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 116 bits (247), Expect(4) = 2e-026
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 800 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 970
Score = 110 bits (234), Expect(5) = 4e-028
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -1
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 966 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 802
Score = 25.4 bits (49), Expect(5) = 4e-028
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2 / -3
Query: 149 P*DPTNA*LAGDKRRPTSVNLQ 214
P P A LAGD RRP S+ Q
Sbjct: 1276 PIRPNFAILAGDTRRPLSIKPQ 1211
Score = 24.9 bits (48), Expect(5) = 4e-028
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1 / -3
Query: 217 QPYHHFQFQNNQAKRYHTN 273
QPYHHFQ + + TN
Sbjct: 1213 QPYHHFQSLAKRYHKSSTN 1157
Score = 24.4 bits (47), Expect(4) = 2e-026
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +3
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 1011 GRCWEVPLFYDW 1046
Score = 24.4 bits (47), Expect(5) = 4e-028
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 806 PSCATGPAT 780
Score = 21.7 bits (41), Expect(4) = 2e-026
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2 / +2
Query: 244 FGIGSGGKAGLQINGGRPPFITRQLSICG 158
FG G L ++ RPP ITRQ S G
Sbjct: 1181 FG*GLEVVVRLWLD*QRPPCITRQNSKIG 1267
Score = 21.7 bits (41), Expect(4) = 2e-026
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +3
Query: 664 GRPCRALG 641
GRPCRA G
Sbjct: 783 GRPCRATG 806
Score = 21.7 bits (41), Expect(5) = 4e-028
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1 / -2
Query: 268 TNQANTSTTKPALILG 315
T ++ ++TKP LILG
Sbjct: 1142 TTTSSDTSTKPMLILG 1095
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 116 bits (247), Expect(4) = 2e-026
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 801 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 971
Score = 110 bits (234), Expect(5) = 4e-028
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -1
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 967 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 803
Score = 25.4 bits (49), Expect(5) = 4e-028
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2 / -3
Query: 149 P*DPTNA*LAGDKRRPTSVNLQ 214
P P A LAGD RRP S+ Q
Sbjct: 1277 PIRPNFAILAGDTRRPLSIKPQ 1212
Score = 24.9 bits (48), Expect(5) = 4e-028
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1 / -3
Query: 217 QPYHHFQFQNNQAKRYHTN 273
QPYHHFQ + + TN
Sbjct: 1214 QPYHHFQSLAKRYHKSSTN 1158
Score = 24.4 bits (47), Expect(4) = 2e-026
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +1
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 1012 GPCWEVPLFYDW 1047
Score = 24.4 bits (47), Expect(5) = 4e-028
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 807 PSCATGPAT 781
Score = 21.7 bits (41), Expect(4) = 2e-026
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2 / +3
Query: 244 FGIGSGGKAGLQINGGRPPFITRQLSICG 158
FG G L ++ RPP ITRQ S G
Sbjct: 1182 FG*GLEVVVRLWLD*QRPPCITRQNSKIG 1268
Score = 21.7 bits (41), Expect(4) = 2e-026
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +1
Query: 664 GRPCRALG 641
GRPCRA G
Sbjct: 784 GRPCRATG 807
Score = 21.7 bits (41), Expect(5) = 4e-028
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1 / -2
Query: 268 TNQANTSTTKPALILG 315
T ++ ++TKP LILG
Sbjct: 1143 TTTSSDTSTKPMLILG 1096
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 116 bits (247), Expect(4) = 2e-026
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 795 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 965
Score = 110 bits (234), Expect(4) = 6e-027
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -3
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 961 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 797
Score = 25.4 bits (49), Expect(4) = 6e-027
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2 / -2
Query: 149 P*DPTNA*LAGDKRRPTSVNLQ 214
P P A LAGD RRP S+ Q
Sbjct: 1271 PIRPNFAILAGDTRRPLSIKPQ 1206
Score = 24.9 bits (48), Expect(4) = 6e-027
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1 / -2
Query: 217 QPYHHFQFQNNQAKRYHTN 273
QPYHHFQ + + TN
Sbjct: 1208 QPYHHFQSLAKRYHKSSTN 1152
Score = 24.4 bits (47), Expect(4) = 6e-027
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 801 PSCATGPAT 775
Score = 24.0 bits (46), Expect(4) = 2e-026
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +1
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 1006 GPC*EVPLFYDW 1041
Score = 21.7 bits (41), Expect(4) = 2e-026
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2 / +3
Query: 244 FGIGSGGKAGLQINGGRPPFITRQLSICG 158
FG G L ++ RPP ITRQ S G
Sbjct: 1176 FG*GLEVVVRLWLD*QRPPCITRQNSKIG 1262
Score = 21.7 bits (41), Expect(4) = 2e-026
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2 / +1
Query: 664 GRPCRALG 641
GRPCRA G
Sbjct: 778 GRPCRATG 801
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1734_E02
Length = 168566
Score = 116 bits (247), Expect(2) = 1e-025
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 119892 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 120062
Score = 110 bits (234), Expect(2) = 6e-024
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 120058 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 119894
Score = 24.4 bits (47), Expect(2) = 1e-025
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +1
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 120103 GPCWEVPLFYDW 120138
Score = 24.4 bits (47), Expect(2) = 6e-024
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 119898 PSCATGPAT 119872
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 116 bits (247), Expect(2) = 1e-025
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 9917 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 10087
Score = 110 bits (234), Expect(2) = 6e-024
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 10083 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 9919
Score = 24.4 bits (47), Expect(2) = 6e-024
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 9923 PSCATGPAT 9897
Score = 24.4 bits (47), Expect(2) = 1e-025
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +3
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 10128 GPCWEVPLFYDW 10163
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 116 bits (247), Expect(2) = 1e-025
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 21447 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 21617
Score = 110 bits (234), Expect(2) = 6e-024
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 21613 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 21449
Score = 24.4 bits (47), Expect(2) = 1e-025
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2 / +1
Query: 391 GACREAPWFYEW 356
G C E P FY+W
Sbjct: 21658 GPCWEVPLFYDW 21693
Score = 24.4 bits (47), Expect(2) = 6e-024
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -3
Query: 641 PQCATGPAT 667
P CATGPAT
Sbjct: 21453 PSCATGPAT 21427
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 116 bits (247), Expect(2) = 2e-025
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +3
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 6405048 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 6405218
Score = 110 bits (234), Expect = 2e-022
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 6405214 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 6405050
Score = 39.1 bits (79), Expect(2) = 2e-025
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -1 / +1
Query: 488 PPSFPQRRLVRRRRGATSSSFPLVVVESSTLTRSLPRGA 372
PP+ P+RR RRRRGA S + SST+ LPR A
Sbjct: 8640508 PPTSPRRRRRRRRRGAGSGARRASAAPSSTVRAPLPRRA 8640624
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 116 bits (247), Expect = 3e-024
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 17796212 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 17796382
Score = 110 bits (234), Expect = 2e-022
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 17796378 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 17796214
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 116 bits (247), Expect = 3e-024
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +1
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 31249276 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 31249446
Score = 110 bits (234), Expect = 2e-022
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 31249442 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 31249278
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 116 bits (247), Expect = 3e-024
Identities = 47/57 (82%), Positives = 50/57 (87%)
Frame = -3 / +2
Query: 648 HWGQNWQSNTLLDGQALSFRVTTSDGRSVVSSNAAPRGWGFGQTFSGAQFN*TPSIV 478
+WGQNWQS LLDGQALSFRVTT DGRSVVS+NA PRGW FGQTFSGAQFN* SI+
Sbjct: 31240049 NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN*FRSIL 31240219
Score = 110 bits (234), Expect = 2e-022
Identities = 45/55 (81%), Positives = 46/55 (83%)
Frame = +2 / -2
Query: 482 MEGVQLNWAPLKVWPKPQPRGAALLETTERPSLVVTRKERACPSRSVLLCQFWPQ 646
+E QLNWAPLKVWPK QPRG ALLETTERPS VVTRKE A PSRS LCQFWPQ
Sbjct: 31240215 IERNQLNWAPLKVWPKDQPRGTALLETTERPSPVVTRKESA*PSRSAALCQFWPQ 31240051
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,043,062,262
Number of Sequences: 438736
Number of extensions: 60718215
Number of successful extensions: 347716
Number of sequences better than 1.0e-020: 16
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 147936824603
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)