TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2568371.2.1
(782 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA... 169 3e-040
dbj|AP004635.3| Oryza sativa (japonica cultivar-group) geno... 169 3e-040
dbj|AP005504.3| Oryza sativa (japonica cultivar-group) geno... 169 3e-040
gb|AACV01017332.1| Oryza sativa (japonica cultivar-group) c... 169 3e-040
ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA 169 3e-040
ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA 169 3e-040
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 169 3e-040
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 169 3e-040
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 169 3e-040
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 169 3e-040
dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA... 167 1e-039
>dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E08, full
insert sequence
Length = 2084
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 375 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 196
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 195 AVLYIN 178
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 167 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 346
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 347 SPSSTLAKAT 376
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0672D01
Length = 146954
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -1
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 94592 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 94413
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 94412 AVLYIN 94395
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 94384 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 94563
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 94564 SPSSTLAKAT 94593
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0577B11
Length = 180355
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 17381 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 17202
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 17201 AVLYIN 17184
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 17173 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 17352
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 17353 SPSSTLAKAT 17382
>gb|AACV01017332.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017332, whole
genome shotgun sequence
Length = 29034
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / +2
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 28646 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 28825
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 28826 AVLYIN 28843
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / -1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 28854 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 28675
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 28674 SPSSTLAKAT 28645
>ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 3707
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / +3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 2865 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 3044
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 3045 AVLYIN 3062
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / -2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 3073 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 2894
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 2893 SPSSTLAKAT 2864
>ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2084
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 375 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 196
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 195 AVLYIN 178
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 167 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 346
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 347 SPSSTLAKAT 376
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -1
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 3306401 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 3306222
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 3306221 AVLYIN 3306204
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 3306193 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 3306372
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 3306373 SPSSTLAKAT 3306402
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 3445214 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 3445035
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 3445034 AVLYIN 3445017
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 3445006 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 3445185
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 3445186 SPSSTLAKAT 3445215
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 3445214 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 3445035
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 3445034 AVLYIN 3445017
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +1
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 3445006 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 3445185
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 3445186 SPSSTLAKAT 3445215
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 169 bits (364), Expect = 3e-040
Identities = 65/66 (98%), Positives = 66/66 (100%)
Frame = +2 / -1
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 3538875 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 3538696
Query: 182 AVLYIN 199
AVLYIN
Sbjct: 3538695 AVLYIN 3538678
Score = 156 bits (335), Expect = 3e-036
Identities = 65/70 (92%), Positives = 65/70 (92%)
Frame = -3 / +2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM STAVMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 3538667 MWGMLM*STAVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 3538846
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 3538847 SPSSTLAKAT 3538876
>dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J18, full
insert sequence
Length = 3707
Score = 167 bits (360), Expect = 1e-039
Identities = 64/66 (96%), Positives = 65/66 (98%)
Frame = +2 / +3
Query: 2 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGRHGKTPVVVLVWWAFTFVIT 181
VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILG+HGKTPVVVLVWWAFTFVIT
Sbjct: 2865 VAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVIT 3044
Query: 182 AVLYIN 199
VLYIN
Sbjct: 3045 VVLYIN 3062
Score = 154 bits (331), Expect = 1e-035
Identities = 64/70 (91%), Positives = 64/70 (91%)
Frame = -3 / -2
Query: 210 MWGMLMYSTAVMTKVKAHQTSTTTGVLPCLPRMPLAKG*RWNSTQKLKKTPPATLSQCVH 31
MWGMLM ST VMTKVKAHQTSTTTGVLPC PRMPLAKG*RW TQKLK TPPATLSQCVH
Sbjct: 3073 MWGMLM*STTVMTKVKAHQTSTTTGVLPCFPRMPLAKG*RWKRTQKLKNTPPATLSQCVH 2894
Query: 30 SPSSTLAKAT 1
SPSSTLAKAT
Sbjct: 2893 SPSSTLAKAT 2864
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,418,953,608
Number of Sequences: 438736
Number of extensions: 60313405
Number of successful extensions: 357676
Number of sequences better than 1.0e-020: 14
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 182425164081
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)