TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542042.2.1
(691 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 78 7e-036
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 78 8e-036
dbj|AP004168.3| Oryza sativa (japonica cultivar-group) geno... 78 8e-036
gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) c... 78 9e-036
ref|XM_465009.1| Oryza sativa (japonica cultivar-group), mRNA 78 1e-035
dbj|AK106817.1| Oryza sativa (japonica cultivar-group) cDNA... 75 6e-032
ref|XM_465015.1| Oryza sativa (japonica cultivar-group), mRNA 75 6e-032
gb|AACV01003932.1| Oryza sativa (japonica cultivar-group) c... 75 4e-027
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 78.0 bits (164), Expect(4) = 7e-036
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / -3
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+A+CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 10931213 GGATAVAVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 10931082
Score = 75.3 bits (158), Expect(2) = 1e-025
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2 / +3
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+ +CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 10966986 GGATAVDVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 10967117
Score = 65.2 bits (136), Expect(2) = 1e-025
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +3
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM YPY V+YCH+PAD ALR++L + G+ A A+
Sbjct: 10966863 GGDAVVACHPMPYPYEVYYCHRPADAVALRVDLHAVAGVGLGGATAV 10967003
Score = 63.8 bits (133), Expect(4) = 7e-036
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / -3
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM Y Y V+YCH+PAD ALR++L + D G+ A A+
Sbjct: 10931336 GGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAV 10931196
Score = 34.5 bits (69), Expect(4) = 7e-036
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2 / -3
Query: 41 CATSEQAAADFAASSLGVRASKLV 112
CATS +A DFAAS+LG A + V
Sbjct: 10931474 CATSREAVLDFAASALGTSAPRAV 10931403
Score = 33.6 bits (67), Expect(4) = 7e-036
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / -3
Query: 119 VTTVHGGKDATRYVVAPNGITRIGKAAGAA 208
VTT+ G++ RYVVA +G+ RIG A A
Sbjct: 10931405 VTTLVHGREPRRYVVAADGVARIGGDAVVA 10931316
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 78.0 bits (164), Expect(4) = 8e-036
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / -3
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+A+CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 4929555 GGATAVAVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 4929424
Score = 75.3 bits (158), Expect(3) = 2e-030
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2 / +1
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+ +CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 4964353 GGATAVDVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 4964484
Score = 65.2 bits (136), Expect(3) = 2e-030
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +1
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM YPY V+YCH+PAD ALR++L + G+ A A+
Sbjct: 4964230 GGDAVVACHPMPYPYEVYYCHRPADAVALRVDLHAVAGVGLGGATAV 4964370
Score = 63.8 bits (133), Expect(4) = 8e-036
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / -3
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM Y Y V+YCH+PAD ALR++L + D G+ A A+
Sbjct: 4929678 GGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAV 4929538
Score = 34.5 bits (69), Expect(4) = 8e-036
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2 / -3
Query: 41 CATSEQAAADFAASSLGVRASKLV 112
CATS +A DFAAS+LG A + V
Sbjct: 4929816 CATSREAVLDFAASALGTSAPRAV 4929745
Score = 34.1 bits (68), Expect(3) = 2e-030
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 26 PEAHACATSEQAAADFAASSLGVRASKLV 112
P A + ATS +A DFAAS+LG A + V
Sbjct: 4964077 PAARSHATSREAVLDFAASALGTSAPRAV 4964163
Score = 33.6 bits (67), Expect(4) = 8e-036
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / -3
Query: 119 VTTVHGGKDATRYVVAPNGITRIGKAAGAA 208
VTT+ G++ RYVVA +G+ RIG A A
Sbjct: 4929747 VTTLVHGREPRRYVVAADGVARIGGDAVVA 4929658
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1756_H07
Length = 217205
Score = 78.0 bits (164), Expect(4) = 8e-036
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / -2
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+A+CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 102802 GGATAVAVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 102671
Score = 75.3 bits (158), Expect(4) = 5e-032
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2 / +2
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+ +CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 137600 GGATAVDVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 137731
Score = 65.2 bits (136), Expect(4) = 5e-032
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +2
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM YPY V+YCH+PAD ALR++L + G+ A A+
Sbjct: 137477 GGDAVVACHPMPYPYEVYYCHRPADAVALRVDLHAVAGVGLGGATAV 137617
Score = 63.8 bits (133), Expect(4) = 8e-036
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / -2
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM Y Y V+YCH+PAD ALR++L + D G+ A A+
Sbjct: 102925 GGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAV 102785
Score = 34.5 bits (69), Expect(4) = 8e-036
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2 / -2
Query: 41 CATSEQAAADFAASSLGVRASKLV 112
CATS +A DFAAS+LG A + V
Sbjct: 103063 CATSREAVLDFAASALGTSAPRAV 102992
Score = 34.1 bits (68), Expect(4) = 5e-032
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 26 PEAHACATSEQAAADFAASSLGVRASKLV 112
P A + ATS +A DFAAS+LG A + V
Sbjct: 137324 PAARSHATSREAVLDFAASALGTSAPRAV 137410
Score = 33.6 bits (67), Expect(4) = 8e-036
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / -2
Query: 119 VTTVHGGKDATRYVVAPNGITRIGKAAGAA 208
VTT+ G++ RYVVA +G+ RIG A A
Sbjct: 102994 VTTLVHGREPRRYVVAADGVARIGGDAVVA 102905
Score = 22.6 bits (43), Expect(4) = 5e-032
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 156 TWWRPTASHASA 191
TW RPTAS SA
Sbjct: 137445 TW*RPTASPGSA 137480
>gb|AACV01003929.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003929, whole
genome shotgun sequence
Length = 71112
Score = 78.0 bits (164), Expect(4) = 9e-036
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / +2
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+A+CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 24128 GGATAVAVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 24259
Score = 63.8 bits (133), Expect(4) = 9e-036
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +2
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM Y Y V+YCH+PAD ALR++L + D G+ A A+
Sbjct: 24005 GGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAV 24145
Score = 34.5 bits (69), Expect(4) = 9e-036
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2 / +2
Query: 41 CATSEQAAADFAASSLGVRASKLV 112
CATS +A DFAAS+LG A + V
Sbjct: 23867 CATSREAVLDFAASALGTSAPRAV 23938
Score = 33.6 bits (67), Expect(4) = 9e-036
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / +2
Query: 119 VTTVHGGKDATRYVVAPNGITRIGKAAGAA 208
VTT+ G++ RYVVA +G+ RIG A A
Sbjct: 23936 VTTLVHGREPRRYVVAADGVARIGGDAVVA 24025
>ref|XM_465009.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1002
Score = 78.0 bits (164), Expect(4) = 1e-035
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +2 / +1
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+A+CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 862 GGATAVAVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 993
Score = 63.8 bits (133), Expect(4) = 1e-035
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +1
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM Y Y V+YCH+PAD ALR++L + D G+ A A+
Sbjct: 739 GGDAVVACHPMPYLYEVYYCHRPADAVALRVDLHAVADVGLGGATAV 879
Score = 34.5 bits (69), Expect(4) = 1e-035
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2 / +1
Query: 41 CATSEQAAADFAASSLGVRASKLV 112
CATS +A DFAAS+LG A + V
Sbjct: 601 CATSREAVLDFAASALGTSAPRAV 672
Score = 33.6 bits (67), Expect(4) = 1e-035
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2 / +1
Query: 119 VTTVHGGKDATRYVVAPNGITRIGKAAGAA 208
VTT+ G++ RYVVA +G+ RIG A A
Sbjct: 670 VTTLVHGREPRRYVVAADGVARIGGDAVVA 759
>dbj|AK106817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D04, full
insert sequence
Length = 956
Score = 75.3 bits (158), Expect(4) = 6e-032
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2 / +2
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+ +CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 713 GGATAVDVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 844
Score = 65.2 bits (136), Expect(4) = 6e-032
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +2
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM YPY V+YCH+PAD ALR++L + G+ A A+
Sbjct: 590 GGDAVVACHPMPYPYEVYYCHRPADAVALRVDLHAVAGVGLGGATAV 730
Score = 34.1 bits (68), Expect(4) = 6e-032
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 26 PEAHACATSEQAAADFAASSLGVRASKLV 112
P A + ATS +A DFAAS+LG A + V
Sbjct: 437 PAARSHATSREAVLDFAASALGTSAPRAV 523
Score = 22.6 bits (43), Expect(4) = 6e-032
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 156 TWWRPTASHASA 191
TW RPTAS SA
Sbjct: 558 TW*RPTASPGSA 593
>ref|XM_465015.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 956
Score = 75.3 bits (158), Expect(4) = 6e-032
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2 / +2
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+ +CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 713 GGATAVDVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 844
Score = 65.2 bits (136), Expect(4) = 6e-032
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / +2
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM YPY V+YCH+PAD ALR++L + G+ A A+
Sbjct: 590 GGDAVVACHPMPYPYEVYYCHRPADAVALRVDLHAVAGVGLGGATAV 730
Score = 34.1 bits (68), Expect(4) = 6e-032
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2 / +2
Query: 26 PEAHACATSEQAAADFAASSLGVRASKLV 112
P A + ATS +A DFAAS+LG A + V
Sbjct: 437 PAARSHATSREAVLDFAASALGTSAPRAV 523
Score = 22.6 bits (43), Expect(4) = 6e-032
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 156 TWWRPTASHASA 191
TW RPTAS SA
Sbjct: 558 TW*RPTASPGSA 593
>gb|AACV01003932.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003932, whole
genome shotgun sequence
Length = 6778
Score = 75.3 bits (158), Expect(3) = 4e-027
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2 / -2
Query: 317 GVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWL 448
G TA+ +CH NT WD YF++L +RG+ ICH+MP+ YVLWL
Sbjct: 6597 GGATAVDVCHVNTTTWDSAYFELLKASRGDAICHYMPQGYVLWL 6466
Score = 65.2 bits (136), Expect(3) = 4e-027
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +2 / -2
Query: 200 GAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGGVTTAIAM 340
G AVV CHPM YPY V+YCH+PAD ALR++L + G+ A A+
Sbjct: 6720 GGDAVVACHPMPYPYEVYYCHRPADAVALRVDLHAVAGVGLGGATAV 6580
Score = 22.6 bits (43), Expect(3) = 4e-027
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3 / -3
Query: 156 TWWRPTASHASA 191
TW RPTAS SA
Sbjct: 6752 TW*RPTASPGSA 6717
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,822,733,103
Number of Sequences: 438736
Number of extensions: 50634346
Number of successful extensions: 289701
Number of sequences better than 1.0e-020: 9
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 154289939770
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)