TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU174576.1|AU174576 AU174576 Rice cDNA from leaf Oryza s... 135 2e-032
gb|AU096900.1|AU096900 AU096900 Rice green shoot Oryza sati... 135 3e-032
dbj|AK121629.1| Oryza sativa (japonica cultivar-group) cDNA... 135 4e-032
ref|NM_190462.1| Oryza sativa (japonica cultivar-group), p... 135 2e-030
gb|AU101831.1|AU101831 AU101831 Rice green shoot Oryza sati... 129 1e-028
gb|AACV01002623.1| Oryza sativa (japonica cultivar-group) c... 93 1e-025
dbj|AP004366.3| Oryza sativa (japonica cultivar-group) geno... 93 1e-023
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 93 9e-022
>gb|AU174576.1|AU174576 AU174576 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10058, mRNA sequence
Length = 475
Score = 135 bits (290), Expect(2) = 2e-032
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTN+VDHTTH FKK DG+TFV+E
Sbjct: 3 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNIVDHTTHDFKKDDGVTFVIE 182
Query: 182 D* 187
D*
Sbjct: 183 D* 188
Score = 93.6 bits (198), Expect(2) = 8e-023
Identities = 36/61 (59%), Positives = 50/61 (81%)
Frame = -3 / -3
Query: 184 VLHHKCYPIMFLEMVCGMINNVGVAQFQIIEINGVRLEQRPGMPGPLVQLEKLGARNPEH 5
VL+HK YP++FLE+V +++N+GVA+ Q++EI+ +RLE RP MPGP VQL+KL A NPE
Sbjct: 185 VLNHKSYPVVFLEIVRSVVDNIGVAELQVVEIHRIRLELRPRMPGPDVQLQKLSAGNPED 6
Query: 4 A 2
A
Sbjct: 5 A 3
Score = 35.4 bits (71), Expect(2) = 8e-023
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2 / -3
Query: 320 YTSLNKDLRCAFLHDTLHVGCSLQT 246
Y LNK L CA+ LH+ CSL+T
Sbjct: 332 YNDLNKQLICAYCTSHLHIDCSLKT 258
Score = 25.4 bits (49), Expect(2) = 2e-032
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +1
Query: 247 VCSEQPTCKVSCRNAHLRSLFK 312
V +EQ CK + AH+ LFK
Sbjct: 259 VFNEQSICKCDVQYAHMSCLFK 324
>gb|AU096900.1|AU096900 AU096900 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16450, mRNA sequence
Length = 527
Score = 135 bits (290), Expect(2) = 3e-032
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2 / -3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTN+VDHTTH FKK DG+TFV+E
Sbjct: 333 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNIVDHTTHDFKKDDGVTFVIE 154
Query: 182 D* 187
D*
Sbjct: 153 D* 148
Score = 93.6 bits (198), Expect(2) = 9e-023
Identities = 36/61 (59%), Positives = 50/61 (81%)
Frame = -3 / +1
Query: 184 VLHHKCYPIMFLEMVCGMINNVGVAQFQIIEINGVRLEQRPGMPGPLVQLEKLGARNPEH 5
VL+HK YP++FLE+V +++N+GVA+ Q++EI+ +RLE RP MPGP VQL+KL A NPE
Sbjct: 151 VLNHKSYPVVFLEIVRSVVDNIGVAELQVVEIHRIRLELRPRMPGPDVQLQKLSAGNPED 330
Query: 4 A 2
A
Sbjct: 331 A 333
Score = 35.4 bits (71), Expect(2) = 9e-023
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2 / +1
Query: 320 YTSLNKDLRCAFLHDTLHVGCSLQT 246
Y LNK L CA+ LH+ CSL+T
Sbjct: 4 YNDLNKQLICAYCTSHLHIDCSLKT 78
Score = 25.4 bits (49), Expect(2) = 3e-032
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / -1
Query: 247 VCSEQPTCKVSCRNAHLRSLFK 312
V +EQ CK + AH+ LFK
Sbjct: 77 VFNEQSICKCDVQYAHMSCLFK 12
>dbj|AK121629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050C20, full
insert sequence
Length = 982
Score = 135 bits (290), Expect(2) = 4e-032
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2 / +2
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTN+VDHTTH FKK DG+TFV+E
Sbjct: 479 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNIVDHTTHDFKKDDGVTFVIE 658
Query: 182 D* 187
D*
Sbjct: 659 D* 664
Score = 93.6 bits (198), Expect(2) = 1e-022
Identities = 36/61 (59%), Positives = 50/61 (81%)
Frame = -3 / -1
Query: 184 VLHHKCYPIMFLEMVCGMINNVGVAQFQIIEINGVRLEQRPGMPGPLVQLEKLGARNPEH 5
VL+HK YP++FLE+V +++N+GVA+ Q++EI+ +RLE RP MPGP VQL+KL A NPE
Sbjct: 661 VLNHKSYPVVFLEIVRSVVDNIGVAELQVVEIHRIRLELRPRMPGPDVQLQKLSAGNPED 482
Query: 4 A 2
A
Sbjct: 481 A 479
Score = 35.4 bits (71), Expect(2) = 1e-022
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2 / -1
Query: 320 YTSLNKDLRCAFLHDTLHVGCSLQT 246
Y LNK L CA+ LH+ CSL+T
Sbjct: 808 YNDLNKQLICAYCTSHLHIDCSLKT 734
Score = 25.4 bits (49), Expect(2) = 4e-032
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / +3
Query: 247 VCSEQPTCKVSCRNAHLRSLFK 312
V +EQ CK + AH+ LFK
Sbjct: 735 VFNEQSICKCDVQYAHMSCLFK 800
>ref|NM_190462.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 735
Score = 135 bits (290), Expect = 2e-030
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTN+VDHTTH FKK DG+TFV+E
Sbjct: 550 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNIVDHTTHDFKKDDGVTFVIE 729
Query: 182 D* 187
D*
Sbjct: 730 D* 735
>gb|AU101831.1|AU101831 AU101831 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15718, mRNA sequence
Length = 484
Score = 129 bits (277), Expect = 1e-028
Identities = 51/62 (82%), Positives = 55/62 (88%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNVVDHTTHHFKKHDGITFVVE 181
CVFRVSG KFLKL+ GTWHAGP F ADAVDFYNLELSNTN+V HTTH FKK DG+TFV+E
Sbjct: 202 CVFRVSGAKFLKLHIGTWHAGPQFXADAVDFYNLELSNTNIVXHTTHDFKKDDGVTFVIE 381
Query: 182 D* 187
D*
Sbjct: 382 D* 387
>gb|AACV01002623.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002623, whole
genome shotgun sequence
Length = 16548
Score = 92.7 bits (196), Expect(3) = 1e-025
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2 / -3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNV 124
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTNV
Sbjct: 12661 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNV 12539
Score = 48.7 bits (100), Expect(3) = 1e-025
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2 / -1
Query: 101 LELSNTNVVDHTTHHFKKHDGITFVVED* 187
L L + +VDHTTH FKK DG+TFV+ED*
Sbjct: 10743 LLLISFQIVDHTTHDFKKDDGVTFVIED* 10657
Score = 25.4 bits (49), Expect(3) = 1e-025
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1 / -2
Query: 247 VCSEQPTCKVSCRNAHLRSLFK 312
V +EQ CK + AH+ LFK
Sbjct: 10586 VFNEQSICKCDVQYAHMSCLFK 10521
>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0460C04
Length = 189043
Score = 92.7 bits (196), Expect(2) = 1e-023
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2 / +3
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNV 124
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTNV
Sbjct: 80022 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNV 80144
Score = 48.7 bits (100), Expect(2) = 1e-023
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2 / +1
Query: 101 LELSNTNVVDHTTHHFKKHDGITFVVED* 187
L L + +VDHTTH FKK DG+TFV+ED*
Sbjct: 81940 LLLISFQIVDHTTHDFKKDDGVTFVIED* 82026
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 92.7 bits (196), Expect(2) = 9e-022
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +2 / +1
Query: 2 CVFRVSGPKFLKLNKGTWHAGPLFKADAVDFYNLELSNTNV 124
CVFRVSG KFLKL+ GTWHAGP FKADAVDFYNLELSNTNV
Sbjct: 10204738 CVFRVSGAKFLKLHIGTWHAGPQFKADAVDFYNLELSNTNV 10204860
Score = 48.7 bits (100), Expect(2) = 9e-022
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2 / +2
Query: 101 LELSNTNVVDHTTHHFKKHDGITFVVED* 187
L L + +VDHTTH FKK DG+TFV+ED*
Sbjct: 10206656 LLLISFQIVDHTTHDFKKDDGVTFVIED* 10206742
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,092,669,662
Number of Sequences: 438736
Number of extensions: 47895281
Number of successful extensions: 261585
Number of sequences better than 1.0e-020: 9
length of database: 933,473,305
effective HSP length: 57
effective length of database: 908,465,353
effective search space used: 73585693593
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)