TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA 165 3e-039
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 132 2e-034
dbj|AP005467.3| Oryza sativa (japonica cultivar-group) geno... 132 2e-034
dbj|AP003940.3| Oryza sativa (japonica cultivar-group) geno... 132 2e-034
gb|AACV01017284.1| Oryza sativa (japonica cultivar-group) c... 132 2e-034
dbj|AG024984.1| Oryza sativa (japonica cultivar-group) DNA,... 130 5e-034
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 132 2e-029
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 132 2e-029
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 132 2e-029
>ref|XM_480151.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1803
Score = 165 bits (355), Expect = 3e-039
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QKP
Sbjct: 1516 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQKP 1695
Query: 183 QVHESNSKSSAQGDAGWSNRLLA 251
Q+H+ NSKSSAQ W R+LA
Sbjct: 1696 QIHQVNSKSSAQAADRWGARVLA 1764
Score = 137 bits (294), Expect = 8e-031
Identities = 65/95 (68%), Positives = 71/95 (74%)
Frame = -3 / -2
Query: 286 LKITAATTRIMVARSRLLHPASPCADDLLFDS*TCGFCLSFSRPQ*RALSGTTISVML*P 107
++ TAA +AR+R H ++ ADDLLF * CGFC SFSRPQ ALSG ISVML P
Sbjct: 1799 METTAAMISNTIARTRAPHRSAA*ADDLLFTW*ICGFCKSFSRPQYNALSGMIISVMLYP 1620
Query: 106 SGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
SGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 1619 SGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 1515
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 132 bits (283), Expect(2) = 2e-034
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 3007361 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 3007185
Score = 107 bits (228), Expect(2) = 9e-028
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +1
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 3007186 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 3007362
Score = 39.6 bits (80), Expect(2) = 9e-028
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -2 / +1
Query: 281 DHSCDDQDHGCEESVAPSSIALRRRLAV 198
+HSC+DQ H C+ S APS +L R LAV
Sbjct: 3006985 NHSCNDQQHHCKNSRAPSICSLSR*LAV 3007068
Score = 36.8 bits (74), Expect(2) = 2e-034
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3 / -2
Query: 177 KPQVHESNSKSSAQGDAGWSNRLLA 251
+PQ+H+ NSKSSAQ W R+LA
Sbjct: 3007089 RPQIHQVNSKSSAQAADRWGARVLA 3007015
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1349_D05
Length = 174478
Score = 132 bits (283), Expect(2) = 2e-034
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 165241 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 165065
Score = 107 bits (228), Expect(2) = 9e-028
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +3
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 165066 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 165242
Score = 39.6 bits (80), Expect(2) = 9e-028
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -2 / +3
Query: 281 DHSCDDQDHGCEESVAPSSIALRRRLAV 198
+HSC+DQ H C+ S APS +L R LAV
Sbjct: 164865 NHSCNDQQHHCKNSRAPSICSLSR*LAV 164948
Score = 36.8 bits (74), Expect(2) = 2e-034
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3 / -3
Query: 177 KPQVHESNSKSSAQGDAGWSNRLLA 251
+PQ+H+ NSKSSAQ W R+LA
Sbjct: 164969 RPQIHQVNSKSSAQAADRWGARVLA 164895
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1066_B03
Length = 115339
Score = 132 bits (283), Expect(2) = 2e-034
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 74002 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 73826
Score = 107 bits (228), Expect(2) = 9e-028
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +3
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 73827 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 74003
Score = 39.6 bits (80), Expect(2) = 9e-028
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -2 / +3
Query: 281 DHSCDDQDHGCEESVAPSSIALRRRLAV 198
+HSC+DQ H C+ S APS +L R LAV
Sbjct: 73626 NHSCNDQQHHCKNSRAPSICSLSR*LAV 73709
Score = 36.8 bits (74), Expect(2) = 2e-034
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3 / -3
Query: 177 KPQVHESNSKSSAQGDAGWSNRLLA 251
+PQ+H+ NSKSSAQ W R+LA
Sbjct: 73730 RPQIHQVNSKSSAQAADRWGARVLA 73656
>gb|AACV01017284.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017284, whole
genome shotgun sequence
Length = 44346
Score = 132 bits (283), Expect(2) = 2e-034
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 29205 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 29029
Score = 107 bits (228), Expect(2) = 9e-028
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +2
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 29030 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 29206
Score = 39.6 bits (80), Expect(2) = 9e-028
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -2 / +2
Query: 281 DHSCDDQDHGCEESVAPSSIALRRRLAV 198
+HSC+DQ H C+ S APS +L R LAV
Sbjct: 28829 NHSCNDQQHHCKNSRAPSICSLSR*LAV 28912
Score = 36.8 bits (74), Expect(2) = 2e-034
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3 / -3
Query: 177 KPQVHESNSKSSAQGDAGWSNRLLA 251
+PQ+H+ NSKSSAQ W R+LA
Sbjct: 28933 RPQIHQVNSKSSAQAADRWGARVLA 28859
>dbj|AG024984.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04200T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0590, genomic survey sequence
Length = 406
Score = 130 bits (279), Expect(2) = 5e-034
Identities = 49/58 (84%), Positives = 56/58 (96%)
Frame = +3 / +1
Query: 6 LVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
LVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 1 LVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 174
Score = 102 bits (218), Expect(2) = 1e-026
Identities = 47/57 (82%), Positives = 47/57 (82%)
Frame = -3 / -3
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSET 8
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSET
Sbjct: 173 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSET 3
Score = 39.6 bits (80), Expect(2) = 1e-026
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = -2 / -3
Query: 281 DHSCDDQDHGCEESVAPSSIALRRRLAV 198
+HSC+DQ H C+ S APS +L R LAV
Sbjct: 374 NHSCNDQQHHCKNSRAPSICSLSR*LAV 291
Score = 36.8 bits (74), Expect(2) = 5e-034
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3 / +3
Query: 177 KPQVHESNSKSSAQGDAGWSNRLLA 251
+PQ+H+ NSKSSAQ W R+LA
Sbjct: 270 RPQIHQVNSKSSAQAADRWGARVLA 344
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 132 bits (283), Expect = 2e-029
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 2882044 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 2881868
Score = 107 bits (228), Expect = 1e-021
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +3
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 2881869 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 2882045
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 132 bits (283), Expect = 2e-029
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -3
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 3007361 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 3007185
Score = 107 bits (228), Expect = 1e-021
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +1
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 3007186 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 3007362
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 132 bits (283), Expect = 2e-029
Identities = 50/59 (84%), Positives = 57/59 (96%)
Frame = +3 / -2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQK 179
VLVSLDNVG+WNLR+E+LD+WY GQEVYVKVADPLGYNITEM++PDNALYCGLLK+ QK
Sbjct: 3114518 VLVSLDNVGIWNLRSEKLDNWYNGQEVYVKVADPLGYNITEMIMPDNALYCGLLKDLQK 3114342
Score = 107 bits (228), Expect = 1e-021
Identities = 49/59 (83%), Positives = 49/59 (83%)
Frame = -3 / +1
Query: 178 FCLSFSRPQ*RALSGTTISVML*PSGSATFT*TSCPLYQSSSLSARRFQTPTLSSETRT 2
FC SFSRPQ ALSG ISVML PSGSATFT*TSCPLYQ SS S RRFQ PTLSSETRT
Sbjct: 3114343 FCKSFSRPQYNALSGMIISVMLYPSGSATFT*TSCPLYQLSSFSDRRFQMPTLSSETRT 3114519
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,548,731,586
Number of Sequences: 438736
Number of extensions: 56307431
Number of successful extensions: 420609
Number of sequences better than 1.0e-020: 12
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 100790954487
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)