TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073723.1| Oryza sativa (japonica cultivar-group) cDNA... 249 2e-083
ref|XM_466911.1| Oryza sativa (japonica cultivar-group), mRNA 249 2e-083
gb|AACV01004992.1| Oryza sativa (japonica cultivar-group) c... 72 4e-049
dbj|AK103235.1| Oryza sativa (japonica cultivar-group) cDNA... 141 8e-047
ref|XM_468522.1| Oryza sativa (japonica cultivar-group), mRNA 141 8e-047
dbj|AB037145.1| Oryza sativa (japonica cultivar-group) OsRP... 138 1e-046
dbj|AP004192.3| Oryza sativa (japonica cultivar-group) geno... 72 2e-043
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 72 9e-035
dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA... 116 3e-030
gb|AACV01005677.1| Oryza sativa (japonica cultivar-group) c... 55 2e-021
>dbj|AK073723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061H13, full
insert sequence
Length = 1322
Score = 249 bits (538), Expect(3) = 2e-083
Identities = 98/136 (72%), Positives = 119/136 (87%)
Frame = -2 / +3
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVF 886
G K R+AQ LLPLTVKQ MDA+QT+ D+SNFA+NG+EVST+RLVGRML K++RVTDV F
Sbjct: 264 GFPKSRNAQALLPLTVKQIMDASQTNDDKSNFAVNGMEVSTVRLVGRMLNKLDRVTDVSF 443
Query: 885 TLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFN 706
TLDDGTG++ VNRWEN+++D KEMAD N +YVIV GGLKGFQGKR VVAY+VRR+TNFN
Sbjct: 444 TLDDGTGRVPVNRWENDSTDTKEMADIQNGDYVIVNGGLKGFQGKRQVVAYSVRRITNFN 623
Query: 705 EITCHFLHCIQVHMEL 658
++T HFLHC+ VH+EL
Sbjct: 624 DVTHHFLHCVHVHLEL 671
Score = 156 bits (335), Expect(2) = 2e-046
Identities = 73/139 (52%), Positives = 87/139 (62%)
Frame = +1 / -1
Query: 652 PWELHMHLNAVQKVTGYFIEVCHTPHSIGNYMALSLKTFQTANDYDXXXXXXXXXXXXXX 831
P +L +H+NAV+KV Y IEV +TPH + N++ L LKTF T D +
Sbjct: 677 PGKLQVHMNAVKKVMCYIIEVGYTPHRVSNHLTLPLKTF*TTIDNNIVTILNVSHLLSIS 498
Query: 832 XXXFPAIHIYLASTIIKSEYNICDTLNLT*HASNKPNRRHLNAVDGEIRPVTAGLRRVHG 1011
FPAIH Y A TIIKSE I + + L *HAS KPNR HL+A+D +IR V GL RVH
Sbjct: 497 AIVFPAIHRYPACTIIKSE*YIRNPIKLI*HASYKPNRGHLHAIDSKIRLVVVGLGRVHD 318
Query: 1012 LFHGEREQRLRAPTLREAA 1068
L HGEREQRL PTL EAA
Sbjct: 317 LLHGEREQRLGVPTLGEAA 261
Score = 114 bits (243), Expect(2) = 9e-032
Identities = 61/116 (52%), Positives = 70/116 (60%)
Frame = +3 / -3
Query: 660 APYAPECSAESDRLFH*SLSHAAQHRQLHGAFLENLSNRQ*L*HSSRY*HQPSP*HRKPH 839
AP A E S ESD L H*S +A+Q +Q A LENL + * *HS QPSP*++
Sbjct: 669 APSAHERSEESDVLHH*SWLYASQSKQPPDASLENLLDHH*Q*HSHHSECQPSP*YQCYR 490
Query: 840 FPSDSHLSCQYHHQE*IQHL*HAQPYLACVQQA*S*TPQRR*WRN*TCHRWFAPRP 1007
FPSDS + C YHHQE*+ H * Q YL CV QA* TP * +N TC RW RP
Sbjct: 489 FPSDSQVPCLYHHQE*MIHP*PDQAYLTCVLQA*PWTPPCH*QQNSTCRRWSGTRP 322
Score = 85.8 bits (181), Expect(3) = 2e-083
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = -2 / +3
Query: 588 NPVDGNYISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNT 409
N G + +LVL+VFHDP+VM+ +HG+ + V RL LP++ V I VD+G++Y T
Sbjct: 801 NTGTGTNMIDLVLNVFHDPAVMNDDHGVGVDYVSRRLNLPEETVGKIIIDQVDLGHLYAT 980
Query: 408 IDDFHYKSVRNG* 370
IDD HYKS NG*
Sbjct: 981 IDDHHYKSTMNG* 1019
Score = 59.3 bits (123), Expect(2) = 2e-046
Identities = 34/70 (48%), Positives = 40/70 (57%)
Frame = +2 / -2
Query: 350 TLDLQRGHPFRTDL*WKSSIVL*MLPTST*PWMAALTTSSGSLRRSMTSLMCSPCSWSMT 529
T +++ PF DL*W SSIV P ST M T SSG LRR +T +P S +T
Sbjct: 1039 TYNIEYDQPFIVDL*WWSSIVAYKCPRSTWSIMIFPTVSSGRLRRRLT*STPTPWSSFIT 860
Query: 530 DGS*KTLKTK 559
GS*KT KTK
Sbjct: 859 AGS*KTFKTK 830
Score = 57.4 bits (119), Expect(4) = 1e-029
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = -1 / +2
Query: 952 GVYD*ACWTHAR*G*ACHRCCIHS**WYWQDRCESLGK*GFRC*GDG* 809
GV+ *AC TH +* *+ + C IHS**WY Q CESLGK *GDG*
Sbjct: 377 GVHG*ACRTHVK*A*SGYGCIIHS**WYRQGTCESLGKR*H*Y*GDG* 520
Score = 54.2 bits (112), Expect(4) = 1e-029
Identities = 31/60 (51%), Positives = 35/60 (58%)
Frame = -3 / +1
Query: 794 TMS*SLAV*KVFKESAM*LPMLCGV*QTSMK*PVTFCTAFRCIWSSQG*SRSILQLQHME 615
TM S+ V*KVFK S L L GV* TSM * +TF TAF C WS G S + +Q E
Sbjct: 535 TMLLSMVV*KVFKGSVRWLLTL*GV*PTSMM*HITFFTAFMCTWSLPGRSPK*MLIQQQE 714
Score = 51.9 bits (107), Expect(2) = 9e-032
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1 / -1
Query: 424 AHINMTLDGRTDYIIW*FETIYDIFDVQSMLLVHDRWVMKNTQDQVGYVVSINRI 588
+ IN+ + D +W* +T I SM+++H+ WVMKN QDQV ++ S I
Sbjct: 965 SQINLVYNDFPDCFLW*IKTTAHIIYAYSMVIIHNCWVMKNIQDQVDHICSSTSI 801
Score = 41.8 bits (85), Expect(4) = 1e-029
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -1 / +2
Query: 595 TAKSG*WKLHIQLGLECFS*PICHGPGAWTAHQRCHRSSQTTR*CSQCGHPRSC*CG 425
T K W + +LGLECFS*P + W+ + C SS +TR S+ H R * G
Sbjct: 794 TTKYWYWNKYDRLGLECFS*PSSYE**PWSRRRLCEPSS*STRGNSRENHYRPS*SG 964
Score = 36.8 bits (74), Expect(4) = 1e-029
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -1 / +2
Query: 1051 SERADAAPAHRETDHGR 1001
SER AAPAHRE DHGR
Sbjct: 278 SERPGAAPAHREADHGR 328
Score = 25.4 bits (49), Expect(3) = 2e-083
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = -3 / +1
Query: 1190 CXXXXXXXXXXXXXXXAPGTLTRSSAAGASCPHSPRWSRRTAAS 1059
C GT SSAA SCP RR A+
Sbjct: 124 CTASASAAAAAGTTMAGEGTPAPSSAAADSCPRRRPTPRRGPAA 255
>ref|XM_466911.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1322
Score = 249 bits (538), Expect(3) = 2e-083
Identities = 98/136 (72%), Positives = 119/136 (87%)
Frame = -2 / +3
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVF 886
G K R+AQ LLPLTVKQ MDA+QT+ D+SNFA+NG+EVST+RLVGRML K++RVTDV F
Sbjct: 264 GFPKSRNAQALLPLTVKQIMDASQTNDDKSNFAVNGMEVSTVRLVGRMLNKLDRVTDVSF 443
Query: 885 TLDDGTGKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFN 706
TLDDGTG++ VNRWEN+++D KEMAD N +YVIV GGLKGFQGKR VVAY+VRR+TNFN
Sbjct: 444 TLDDGTGRVPVNRWENDSTDTKEMADIQNGDYVIVNGGLKGFQGKRQVVAYSVRRITNFN 623
Query: 705 EITCHFLHCIQVHMEL 658
++T HFLHC+ VH+EL
Sbjct: 624 DVTHHFLHCVHVHLEL 671
Score = 156 bits (335), Expect(2) = 2e-046
Identities = 73/139 (52%), Positives = 87/139 (62%)
Frame = +1 / -1
Query: 652 PWELHMHLNAVQKVTGYFIEVCHTPHSIGNYMALSLKTFQTANDYDXXXXXXXXXXXXXX 831
P +L +H+NAV+KV Y IEV +TPH + N++ L LKTF T D +
Sbjct: 677 PGKLQVHMNAVKKVMCYIIEVGYTPHRVSNHLTLPLKTF*TTIDNNIVTILNVSHLLSIS 498
Query: 832 XXXFPAIHIYLASTIIKSEYNICDTLNLT*HASNKPNRRHLNAVDGEIRPVTAGLRRVHG 1011
FPAIH Y A TIIKSE I + + L *HAS KPNR HL+A+D +IR V GL RVH
Sbjct: 497 AIVFPAIHRYPACTIIKSE*YIRNPIKLI*HASYKPNRGHLHAIDSKIRLVVVGLGRVHD 318
Query: 1012 LFHGEREQRLRAPTLREAA 1068
L HGEREQRL PTL EAA
Sbjct: 317 LLHGEREQRLGVPTLGEAA 261
Score = 114 bits (243), Expect(2) = 9e-032
Identities = 61/116 (52%), Positives = 70/116 (60%)
Frame = +3 / -3
Query: 660 APYAPECSAESDRLFH*SLSHAAQHRQLHGAFLENLSNRQ*L*HSSRY*HQPSP*HRKPH 839
AP A E S ESD L H*S +A+Q +Q A LENL + * *HS QPSP*++
Sbjct: 669 APSAHERSEESDVLHH*SWLYASQSKQPPDASLENLLDHH*Q*HSHHSECQPSP*YQCYR 490
Query: 840 FPSDSHLSCQYHHQE*IQHL*HAQPYLACVQQA*S*TPQRR*WRN*TCHRWFAPRP 1007
FPSDS + C YHHQE*+ H * Q YL CV QA* TP * +N TC RW RP
Sbjct: 489 FPSDSQVPCLYHHQE*MIHP*PDQAYLTCVLQA*PWTPPCH*QQNSTCRRWSGTRP 322
Score = 85.8 bits (181), Expect(3) = 2e-083
Identities = 36/73 (49%), Positives = 49/73 (67%)
Frame = -2 / +3
Query: 588 NPVDGNYISNLVLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNT 409
N G + +LVL+VFHDP+VM+ +HG+ + V RL LP++ V I VD+G++Y T
Sbjct: 801 NTGTGTNMIDLVLNVFHDPAVMNDDHGVGVDYVSRRLNLPEETVGKIIIDQVDLGHLYAT 980
Query: 408 IDDFHYKSVRNG* 370
IDD HYKS NG*
Sbjct: 981 IDDHHYKSTMNG* 1019
Score = 59.3 bits (123), Expect(2) = 2e-046
Identities = 34/70 (48%), Positives = 40/70 (57%)
Frame = +2 / -2
Query: 350 TLDLQRGHPFRTDL*WKSSIVL*MLPTST*PWMAALTTSSGSLRRSMTSLMCSPCSWSMT 529
T +++ PF DL*W SSIV P ST M T SSG LRR +T +P S +T
Sbjct: 1039 TYNIEYDQPFIVDL*WWSSIVAYKCPRSTWSIMIFPTVSSGRLRRRLT*STPTPWSSFIT 860
Query: 530 DGS*KTLKTK 559
GS*KT KTK
Sbjct: 859 AGS*KTFKTK 830
Score = 57.4 bits (119), Expect(4) = 1e-029
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = -1 / +2
Query: 952 GVYD*ACWTHAR*G*ACHRCCIHS**WYWQDRCESLGK*GFRC*GDG* 809
GV+ *AC TH +* *+ + C IHS**WY Q CESLGK *GDG*
Sbjct: 377 GVHG*ACRTHVK*A*SGYGCIIHS**WYRQGTCESLGKR*H*Y*GDG* 520
Score = 54.2 bits (112), Expect(4) = 1e-029
Identities = 31/60 (51%), Positives = 35/60 (58%)
Frame = -3 / +1
Query: 794 TMS*SLAV*KVFKESAM*LPMLCGV*QTSMK*PVTFCTAFRCIWSSQG*SRSILQLQHME 615
TM S+ V*KVFK S L L GV* TSM * +TF TAF C WS G S + +Q E
Sbjct: 535 TMLLSMVV*KVFKGSVRWLLTL*GV*PTSMM*HITFFTAFMCTWSLPGRSPK*MLIQQQE 714
Score = 51.9 bits (107), Expect(2) = 9e-032
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1 / -1
Query: 424 AHINMTLDGRTDYIIW*FETIYDIFDVQSMLLVHDRWVMKNTQDQVGYVVSINRI 588
+ IN+ + D +W* +T I SM+++H+ WVMKN QDQV ++ S I
Sbjct: 965 SQINLVYNDFPDCFLW*IKTTAHIIYAYSMVIIHNCWVMKNIQDQVDHICSSTSI 801
Score = 41.8 bits (85), Expect(4) = 1e-029
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -1 / +2
Query: 595 TAKSG*WKLHIQLGLECFS*PICHGPGAWTAHQRCHRSSQTTR*CSQCGHPRSC*CG 425
T K W + +LGLECFS*P + W+ + C SS +TR S+ H R * G
Sbjct: 794 TTKYWYWNKYDRLGLECFS*PSSYE**PWSRRRLCEPSS*STRGNSRENHYRPS*SG 964
Score = 36.8 bits (74), Expect(4) = 1e-029
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -1 / +2
Query: 1051 SERADAAPAHRETDHGR 1001
SER AAPAHRE DHGR
Sbjct: 278 SERPGAAPAHREADHGR 328
Score = 25.4 bits (49), Expect(3) = 2e-083
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = -3 / +1
Query: 1190 CXXXXXXXXXXXXXXXAPGTLTRSSAAGASCPHSPRWSRRTAAS 1059
C GT SSAA SCP RR A+
Sbjct: 124 CTASASAAAAAGTTMAGEGTPAPSSAAADSCPRRRPTPRRGPAA 255
>gb|AACV01004992.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004992, whole
genome shotgun sequence
Length = 15905
Score = 72.1 bits (151), Expect(7) = 4e-049
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = -2 / -1
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLV 931
G + R+AQ LLPLTVKQ MDA+QT+ D+SNFA+NG+EVST+ ++
Sbjct: 10793 GCGQSRNAQALLPLTVKQIMDASQTNDDKSNFAVNGMEVSTVSIL 10659
Score = 67.0 bits (140), Expect(7) = 4e-049
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / -2
Query: 942 IRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRW 844
+RLVGRML K++RVTDV FTLDDGTG++ VNRW
Sbjct: 10246 VRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRW 10148
Score = 60.6 bits (126), Expect(6) = 1e-024
Identities = 26/42 (61%), Positives = 29/42 (69%)
Frame = +1 / +3
Query: 943 RRHLNAVDGEIRPVTAGLRRVHGLFHGEREQRLRAPTLREAA 1068
R HL+A+D +IR V GL RVH L HGEREQRL PTL A
Sbjct: 10671 RGHLHAIDSKIRLVVVGLGRVHDLLHGEREQRLGVPTLTTPA 10796
Score = 54.2 bits (112), Expect(7) = 4e-049
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -2 / -3
Query: 735 YAVRRVTNFNEITCHFLHCIQVHMELPGLKQIYS 634
+ VRR+TNFN++T HFLHC+ VH+EL K + S
Sbjct: 8907 FLVRRITNFNDVTHHFLHCVHVHLELTRPKVVRS 8806
Score = 52.4 bits (108), Expect(7) = 4e-049
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2 / -1
Query: 807 ANNENYVIVIGGLKGFQGKRHVVAYAVR 724
A N +YVIV GGLKGFQGKR VVAY+VR
Sbjct: 9941 ARNGDYVIVNGGLKGFQGKRQVVAYSVR 9858
Score = 46.0 bits (94), Expect(6) = 1e-024
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +3 / +1
Query: 837 HFPSDSHLSCQYHHQE*IQHL*HAQPYLACVQQA* 941
H SDS + C YHHQE*+ H * Q YL CV QA*
Sbjct: 10141 HPTSDSQVPCLYHHQE*MIHP*PDQAYLTCVLQA* 10245
Score = 40.0 bits (81), Expect(7) = 4e-049
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2 / -1
Query: 435 VDVGNIYNTIDDFHYKSVRNG* 370
VD+G++Y TIDD HYKS NG*
Sbjct: 7625 VDLGHLYATIDDHHYKSTMNG* 7560
Score = 35.9 bits (72), Expect(6) = 1e-024
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1 / +1
Query: 652 PWELHMHLNAVQKVTGYFIEVCHTP 726
P +L +H+NAV+KV Y IEV +TP
Sbjct: 8824 PGKLQVHMNAVKKVMCYIIEVGYTP 8898
Score = 33.6 bits (67), Expect(6) = 1e-024
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1 / +2
Query: 508 SMLLVHDRWVMKNTQDQVGYVVSINRI 588
S + +H+ WVMKN QDQV ++ S I
Sbjct: 8429 STINLHNCWVMKNIQDQVDHICSSTSI 8509
Score = 29.9 bits (59), Expect(6) = 1e-024
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2 / +1
Query: 350 TLDLQRGHPFRTDL*WKSSIVL*MLPTST 436
T +++ PF DL*W SSIV P ST
Sbjct: 7540 TYNIEYDQPFIVDL*WWSSIVAYKCPRST 7626
Score = 29.9 bits (59), Expect(7) = 4e-049
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / -2
Query: 588 NPVDGNYISNLVLSVFHDPSVM 523
N G + +LVL+VFHDP+VM
Sbjct: 8509 NTGTGTNMIDLVLNVFHDPAVM 8444
Score = 29.0 bits (57), Expect(6) = 1e-024
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1 / +3
Query: 718 HTPHSIGNYMALSLKTFQTAND 783
++PH + N++ L LKTF T D
Sbjct: 9852 YSPHRVSNHLTLPLKTF*TTID 9917
Score = 25.4 bits (49), Expect(7) = 4e-049
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = -3 / -2
Query: 1190 CXXXXXXXXXXXXXXXAPGTLTRSSAAGASCPHSPRWSRRTAAS 1059
C GT SSAA SCP RR A+
Sbjct: 11041 CTASASAAAAAGTTMAGEGTPAPSSAAADSCPRRRPTPRRGPAA 10910
>dbj|AK103235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F02, full
insert sequence
Length = 1198
Score = 141 bits (302), Expect(2) = 8e-047
Identities = 55/129 (42%), Positives = 82/129 (63%)
Frame = -2 / +3
Query: 1047 SAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGT 868
S L + + + T + F ++GVE + +RLVG + GK ER TDV FT+DDGT
Sbjct: 234 STMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGT 413
Query: 867 GKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
G++D RW N+ +D+ E A N YV VIG LKG Q ++ A+A+R VT++NE+T HF
Sbjct: 414 GRLDFIRWVNDGADSAETAAVQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHF 593
Query: 687 LHCIQVHME 661
+ C+++H+E
Sbjct: 594 IQCVRMHLE 620
Score = 75.3 bits (158), Expect(2) = 8e-047
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = -2 / +3
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDFHYKSVRN 376
VL+VF +P+ ++ EHG+HI +++ R +LP+ + AI D+G+IY+TID+ HYKS N
Sbjct: 783 VLNVFREPANVESEHGVHIDEIVKRFRLPEAKIKVAIDYLADIGHIYSTIDESHYKSAFN 962
>ref|XM_468522.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1198
Score = 141 bits (302), Expect(2) = 8e-047
Identities = 55/129 (42%), Positives = 82/129 (63%)
Frame = -2 / +3
Query: 1047 SAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGT 868
S L + + + T + F ++GVE + +RLVG + GK ER TDV FT+DDGT
Sbjct: 234 STMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGT 413
Query: 867 GKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
G++D RW N+ +D+ E A N YV VIG LKG Q ++ A+A+R VT++NE+T HF
Sbjct: 414 GRLDFIRWVNDGADSAETAAVQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHF 593
Query: 687 LHCIQVHME 661
+ C+++H+E
Sbjct: 594 IQCVRMHLE 620
Score = 75.3 bits (158), Expect(2) = 8e-047
Identities = 27/60 (45%), Positives = 43/60 (71%)
Frame = -2 / +3
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDFHYKSVRN 376
VL+VF +P+ ++ EHG+HI +++ R +LP+ + AI D+G+IY+TID+ HYKS N
Sbjct: 783 VLNVFREPANVESEHGVHIDEIVKRFRLPEAKIKVAIDYLADIGHIYSTIDESHYKSAFN 962
>dbj|AB037145.1| Oryza sativa (japonica cultivar-group) OsRPA32 mRNA for replication
protein A 30kDa, complete cds
Length = 1204
Score = 138 bits (296), Expect(2) = 1e-046
Identities = 54/129 (41%), Positives = 81/129 (62%)
Frame = -2 / +3
Query: 1047 SAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGT 868
S L + + + T + F ++GVE + +RLVG + GK ER TDV F +DDGT
Sbjct: 225 STMPLTVKQISEAQQSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFMIDDGT 404
Query: 867 GKIDVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHF 688
G++D RW N+ +D+ E A N YV VIG LKG Q ++ A+A+R VT++NE+T HF
Sbjct: 405 GRLDFIRWVNDGADSAETAAVQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHF 584
Query: 687 LHCIQVHME 661
+ C+++H+E
Sbjct: 585 IQCVRMHLE 611
Score = 77.1 bits (162), Expect(2) = 1e-046
Identities = 28/60 (46%), Positives = 44/60 (73%)
Frame = -2 / +3
Query: 555 VLSVFHDPSVMDQEHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDFHYKSVRN 376
VL+VF +P+ ++ EHG+HI +++ RL+LP+ + AI D+G+IY+TID+ HYKS N
Sbjct: 774 VLNVFREPANVESEHGVHIDEIVKRLRLPEAKIKVAIDYLADIGHIYSTIDESHYKSAFN 953
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1643_A10
Length = 130037
Score = 72.1 bits (151), Expect(6) = 2e-043
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = -2 / -2
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLV 931
G + R+AQ LLPLTVKQ MDA+QT+ D+SNFA+NG+EVST+ ++
Sbjct: 82153 GCGQSRNAQALLPLTVKQIMDASQTNDDKSNFAVNGMEVSTVSIL 82019
Score = 67.0 bits (140), Expect(6) = 2e-043
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / -3
Query: 942 IRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRW 844
+RLVGRML K++RVTDV FTLDDGTG++ VNRW
Sbjct: 81606 VRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRW 81508
Score = 54.2 bits (112), Expect(6) = 2e-043
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -2 / -1
Query: 735 YAVRRVTNFNEITCHFLHCIQVHMELPGLKQIYS 634
+ VRR+TNFN++T HFLHC+ VH+EL K + S
Sbjct: 80267 FLVRRITNFNDVTHHFLHCVHVHLELTRPKVVRS 80166
Score = 52.4 bits (108), Expect(6) = 2e-043
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2 / -2
Query: 807 ANNENYVIVIGGLKGFQGKRHVVAYAVR 724
A N +YVIV GGLKGFQGKR VVAY+VR
Sbjct: 81301 ARNGDYVIVNGGLKGFQGKRQVVAYSVR 81218
Score = 40.0 bits (81), Expect(6) = 2e-043
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2 / -3
Query: 435 VDVGNIYNTIDDFHYKSVRNG* 370
VD+G++Y TIDD HYKS NG*
Sbjct: 78987 VDLGHLYATIDDHHYKSTMNG* 78922
Score = 29.9 bits (59), Expect(6) = 2e-043
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / -3
Query: 588 NPVDGNYISNLVLSVFHDPSVM 523
N G + +LVL+VFHDP+VM
Sbjct: 79869 NTGTGTNMIDLVLNVFHDPAVM 79804
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 72.1 bits (151), Expect(5) = 9e-035
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = -2 / -2
Query: 1065 GLSKGRSAQTLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLV 931
G + R+AQ LLPLTVKQ MDA+QT+ D+SNFA+NG+EVST+ ++
Sbjct: 591490 GCGQSRNAQALLPLTVKQIMDASQTNDDKSNFAVNGMEVSTVSIL 591356
Score = 67.0 bits (140), Expect(5) = 9e-035
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = -2 / -3
Query: 942 IRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRW 844
+RLVGRML K++RVTDV FTLDDGTG++ VNRW
Sbjct: 590943 VRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRW 590845
Score = 54.2 bits (112), Expect(5) = 9e-035
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = -2 / -1
Query: 735 YAVRRVTNFNEITCHFLHCIQVHMELPGLKQIYS 634
+ VRR+TNFN++T HFLHC+ VH+EL K + S
Sbjct: 589604 FLVRRITNFNDVTHHFLHCVHVHLELTRPKVVRS 589503
Score = 52.4 bits (108), Expect(5) = 9e-035
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2 / -2
Query: 807 ANNENYVIVIGGLKGFQGKRHVVAYAVR 724
A N +YVIV GGLKGFQGKR VVAY+VR
Sbjct: 590638 ARNGDYVIVNGGLKGFQGKRQVVAYSVR 590555
Score = 40.0 bits (81), Expect(5) = 9e-035
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2 / -3
Query: 435 VDVGNIYNTIDDFHYKSVRNG* 370
VD+G++Y TIDD HYKS NG*
Sbjct: 588324 VDLGHLYATIDDHHYKSTMNG* 588259
>dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091F07, full
insert sequence
Length = 1613
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 50/126 (39%), Positives = 75/126 (59%)
Frame = -2 / +1
Query: 1038 TLLPLTVKQTMDAAQTSGDRSNFAINGVEVSTIRLVGRMLGKVERVTDVVFTLDDGTGKI 859
T+L ++ A G F+I+GVE + +R++GR++ V R TDV FTLDD TGKI
Sbjct: 229 TVLHISRSFAAALAADGGGDPVFSIDGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKI 408
Query: 858 DVNRWENEASDAKEMADANNENYVIVIGGLKGFQGKRHVVAYAVRRVTNFNEITCHFLHC 679
+ RW + SD ++ + YV V L GFQ K+ +A ++R + NFNE+ HF+ C
Sbjct: 409 PLVRWITDQSDTRDTSYIQEGVYVKVQVNLMGFQAKKQGLARSIRPINNFNEVVLHFIEC 588
Query: 678 IQVHME 661
+ VH+E
Sbjct: 589 MHVHLE 606
Score = 45.5 bits (93), Expect(2) = 3e-030
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2 / +3
Query: 516 EHGLHIKDVIDRLKLPDDVVSAAIQGHVDVGNIYNTIDDFHYKSVRNG*PRCKSS 352
EHG H+ +++ R +P + ++ G +Y TIDD H KS+ NG* SS
Sbjct: 1215 EHGAHVDELVRRTGMPKANIMGVVKHLAAAGFVYWTIDDNHVKSMCNG*SMQSSS 1379
>gb|AACV01005677.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005677, whole
genome shotgun sequence
Length = 14560
Score = 55.1 bits (114), Expect(6) = 2e-021
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -2 / +2
Query: 942 IRLVGRMLGKVERVTDVVFTLDDGTGKIDVNRW 844
+RLVG + GK ER TDV FT+DDGTG++D RW
Sbjct: 11390 VRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRW 11488
Score = 39.1 bits (79), Expect(6) = 2e-021
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = -2 / +2
Query: 726 RRVTNFNEITCHFLHCIQVHME 661
R VT++NE+T HF+ C+++H+E
Sbjct: 12227 RPVTDYNEVTLHFIQCVRMHLE 12292
Score = 36.3 bits (73), Expect(6) = 2e-021
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2 / +2
Query: 801 NENYVIVIGGLKGFQGKRHVVAYAVRRVT 715
N YV VIG LKG Q ++ A+A+R VT
Sbjct: 12071 NGMYVSVIGSLKGLQERKRATAFAIRYVT 12157
Score = 35.9 bits (72), Expect(6) = 2e-021
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2 / +1
Query: 450 AIQGHVDVGNIYNTIDDFHYKSVRN 376
AI D+G+IY+TID+ HYKS N
Sbjct: 13243 AIDYLADIGHIYSTIDESHYKSAFN 13317
Score = 30.4 bits (60), Expect(6) = 2e-021
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2 / +2
Query: 522 DQEHGLHIKDVIDRLKLPD 466
+ EHG+HI +++ R +LP+
Sbjct: 13058 ESEHGVHIDEIVKRFRLPE 13114
Score = 25.8 bits (50), Expect(6) = 2e-021
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2 / +3
Query: 1050 RSAQTLLPLTVKQTMDAAQT 991
R A + +PLTVKQ +A Q+
Sbjct: 11178 RGASSTMPLTVKQISEAQQS 11237
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,786,226,192
Number of Sequences: 438736
Number of extensions: 119115656
Number of successful extensions: 541222
Number of sequences better than 1.0e-020: 10
length of database: 933,473,305
effective HSP length: 61
effective length of database: 906,710,409
effective search space used: 333669430512
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)