TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.4
(591 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 119 4e-030
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 119 4e-030
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 119 4e-030
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 119 4e-030
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 119 4e-030
gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) c... 119 4e-030
gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (j... 119 4e-030
gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (j... 119 4e-030
gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading y... 108 8e-027
gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading y... 104 1e-025
gb|AU082167.1|AU082167 AU082167 Rice cDNA from young root O... 119 2e-025
gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root O... 119 2e-025
gb|AU082336.1|AU082336 AU082336 Rice immature leaf includin... 119 2e-025
gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3... 119 2e-025
gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 1... 119 2e-025
gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (ja... 119 2e-025
gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 1... 119 2e-025
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-025
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 119 2e-025
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 119 2e-025
gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda pha... 102 5e-025
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 205114 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 205275
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 205330 YCGRSVPSGFQCSN*YSCCSILLH 205401
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 198708 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 198869
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 198924 YCGRSVPSGFQCSN*YSCCSILLH 198995
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / -2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 63948 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 63787
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / -2
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 63732 YCGRSVPSGFQCSN*YSCCSILLH 63661
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 132708 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 132869
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 132924 YCGRSVPSGFQCSN*YSCCSILLH 132995
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0080O10, from chromosome 3, complete sequence
Length = 127917
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 35775 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 35936
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 35991 YCGRSVPSGFQCSN*YSCCSILLH 36062
>gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005727, whole
genome shotgun sequence
Length = 11983
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / -3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 11483 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 11322
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / -3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 11267 YCGRSVPSGFQCSN*YSCCSILLH 11196
>gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 3', mRNA sequence
Length = 806
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / -3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 621 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 460
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / -3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 405 YCGRSVPSGFQCSN*YSCCSILLH 334
>gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 5', mRNA sequence
Length = 643
Score = 119 bits (255), Expect(2) = 4e-030
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 21 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 182
Score = 35.4 bits (71), Expect(2) = 4e-030
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 237 YCGRSVPSGFQCSN*YSCCSILLH 308
>gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--06-C10, mRNA sequence
Length = 459
Score = 108 bits (231), Expect(2) = 8e-027
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = -2 / +1
Query: 389 DALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 34 DTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 183
Score = 35.4 bits (71), Expect(2) = 8e-027
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +1
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 238 YCGRSVPSGFQCSN*YSCCSILLH 309
>gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--04-C09, mRNA sequence
Length = 453
Score = 104 bits (222), Expect(2) = 1e-025
Identities = 41/48 (85%), Positives = 44/48 (91%)
Frame = -2 / +3
Query: 383 LKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
+KLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 9 VKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 152
Score = 35.4 bits (71), Expect(2) = 1e-025
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / +3
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 207 YCGRSVPSGFQCSN*YSCCSILLH 278
>gb|AU082167.1|AU082167 AU082167 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10510, mRNA sequence
Length = 369
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 188 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 349
>gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10510, mRNA sequence
Length = 413
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 188 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 349
>gb|AU082336.1|AU082336 AU082336 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50579, mRNA sequence
Length = 517
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 292 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 453
>gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30638, mRNA sequence
Length = 472
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 253 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 414
>gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20248, mRNA sequence
Length = 327
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 113 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 274
>gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5454, mRNA sequence
Length = 367
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +1
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 148 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 309
>gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20775, mRNA sequence
Length = 587
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +2
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 368 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 529
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 397476 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 397637
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 198708 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 198869
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 119 bits (255), Expect = 2e-025
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = -2 / +3
Query: 401 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 198708 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 198869
>gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-D03, mRNA sequence
Length = 484
Score = 102 bits (218), Expect(2) = 5e-025
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = -2 / -1
Query: 380 KLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLEAAVCLCTVLRA 240
+LGVCAN+LNGLIN LGTPPR PCC+LIQGLADLEAAVCLCT LRA
Sbjct: 460 RLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 320
Score = 35.4 bits (71), Expect(2) = 5e-025
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -2 / -1
Query: 185 YCGRRVPSGFQCF*YIWCSIIYVH 114
YCGR VPSGFQC C I +H
Sbjct: 265 YCGRSVPSGFQCSN*YSCCSILLH 194
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,685,361,842
Number of Sequences: 438736
Number of extensions: 17628455
Number of successful extensions: 594990
Number of sequences better than 1.0e-020: 26
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 125307673146
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)