TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 115 6e-028
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 115 6e-028
gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequ... 115 6e-028
gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbar... 115 6e-028
gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbar... 115 6e-028
gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) c... 115 7e-028
gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (j... 115 7e-028
gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (j... 112 4e-027
gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading y... 101 8e-024
gb|AU082167.1|AU082167 AU082167 Rice cDNA from young root O... 115 1e-023
gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root O... 115 1e-023
gb|AU082336.1|AU082336 AU082336 Rice immature leaf includin... 115 1e-023
gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3... 115 1e-023
gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 1... 115 1e-023
gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (ja... 115 1e-023
gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 1... 115 1e-023
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 115 1e-023
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 115 1e-023
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 115 1e-023
dbj|AK061229.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-022
ref|NM_188432.1| Oryza sativa (japonica cultivar-group), p... 74 1e-022
gb|AU083470.2|AU083470 AU083470 Rice panicle at ripening st... 74 1e-022
gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading y... 97 1e-022
gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda pha... 95 5e-022
gb|C20136.2|C20136 C20136 Rice panicle at ripening stage Or... 69 6e-021
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 115 bits (245), Expect(2) = 6e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +1
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 205111 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 205275
Score = 33.6 bits (67), Expect(2) = 6e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 205330 YCGRSVPSGFQC 205365
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 115 bits (245), Expect(2) = 6e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 198705 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 198869
Score = 33.6 bits (67), Expect(2) = 6e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 198924 YCGRSVPSGFQC 198959
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence
Length = 162241
Score = 115 bits (245), Expect(2) = 6e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / -2
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 63951 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 63787
Score = 33.6 bits (67), Expect(2) = 6e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -2
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 63732 YCGRSVPSGFQC 63697
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0079B22, from chromosome 3, complete sequence
Length = 156933
Score = 115 bits (245), Expect(2) = 6e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 132705 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 132869
Score = 33.6 bits (67), Expect(2) = 6e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 132924 YCGRSVPSGFQC 132959
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0080O10, from chromosome 3, complete sequence
Length = 127917
Score = 115 bits (245), Expect(2) = 6e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 35772 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 35936
Score = 33.6 bits (67), Expect(2) = 6e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 35991 YCGRSVPSGFQC 36026
>gb|AACV01005727.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005727, whole
genome shotgun sequence
Length = 11983
Score = 115 bits (245), Expect(2) = 7e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / -3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 11486 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 11322
Score = 33.6 bits (67), Expect(2) = 7e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 11267 YCGRSVPSGFQC 11232
>gb|CB679733.1|CB679733 OSJNEf03J15.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 3', mRNA sequence
Length = 806
Score = 115 bits (245), Expect(2) = 7e-028
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / -3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 624 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 460
Score = 33.6 bits (67), Expect(2) = 7e-028
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 405 YCGRSVPSGFQC 370
>gb|CB679732.1|CB679732 OSJNEf03J15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf03J15 5', mRNA sequence
Length = 643
Score = 112 bits (239), Expect(2) = 4e-027
Identities = 44/54 (81%), Positives = 48/54 (88%)
Frame = +2 / +3
Query: 92 RCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
RCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 21 RCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 182
Score = 33.6 bits (67), Expect(2) = 4e-027
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 237 YCGRSVPSGFQC 272
>gb|CV722026.1|CV722026 YBH--06-C10.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--06-C10, mRNA sequence
Length = 459
Score = 101 bits (215), Expect(2) = 8e-024
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +2 / +1
Query: 104 DALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 34 DTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 183
Score = 33.6 bits (67), Expect(2) = 8e-024
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +1
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 238 YCGRSVPSGFQC 273
>gb|AU082167.1|AU082167 AU082167 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10510, mRNA sequence
Length = 369
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +2
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 185 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 349
>gb|AU082168.1|AU082168 AU082168 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10510, mRNA sequence
Length = 413
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +2
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 185 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 349
>gb|AU082336.1|AU082336 AU082336 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50579, mRNA sequence
Length = 517
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +1
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 289 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 453
>gb|AU097615.1|AU097615 AU097615 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30638, mRNA sequence
Length = 472
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +1
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 250 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 414
>gb|AU108185.1|AU108185 AU108185 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20248, mRNA sequence
Length = 327
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +2
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 110 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 274
>gb|AU161779.1|AU161779 AU161779 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5454, mRNA sequence
Length = 367
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +1
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 145 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 309
>gb|AU164217.1|AU164217 AU164217 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20775, mRNA sequence
Length = 587
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +2
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 365 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 529
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 397473 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 397637
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 198705 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 198869
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 115 bits (245), Expect = 1e-023
Identities = 45/55 (81%), Positives = 49/55 (89%)
Frame = +2 / +3
Query: 89 GRCPVDALKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
GRCP+D LKLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 198705 GRCPIDTLKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 198869
>dbj|AK061229.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A03, full
insert sequence
Length = 1016
Score = 74.4 bits (156), Expect(2) = 1e-022
Identities = 28/36 (77%), Positives = 34/36 (94%)
Frame = +3 / +1
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSAL DGLHFTP+GNKILF+ V++TLE+
Sbjct: 625 MQQFPDWQTSALCDGLHFTPLGNKILFDCVLETLES 732
Score = 56.5 bits (117), Expect(2) = 1e-022
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3 / +1
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
SIGFSQ L DLPLFH+IDPKDP+KAF
Sbjct: 730 SIGFSQGSLQPDLPLFHDIDPKDPLKAF 813
>ref|NM_188432.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 717
Score = 74.4 bits (156), Expect(2) = 1e-022
Identities = 28/36 (77%), Positives = 34/36 (94%)
Frame = +3 / +1
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSAL DGLHFTP+GNKILF+ V++TLE+
Sbjct: 520 MQQFPDWQTSALCDGLHFTPLGNKILFDCVLETLES 627
Score = 56.5 bits (117), Expect(2) = 1e-022
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3 / +1
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
SIGFSQ L DLPLFH+IDPKDP+KAF
Sbjct: 625 SIGFSQGSLQPDLPLFHDIDPKDPLKAF 708
>gb|AU083470.2|AU083470 AU083470 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11568, mRNA sequence
Length = 643
Score = 74.4 bits (156), Expect(2) = 1e-022
Identities = 28/36 (77%), Positives = 34/36 (94%)
Frame = +3 / +2
Query: 567 MQEFPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
MQ+FPDWQTSAL DGLHFTP+GNKILF+ V++TLE+
Sbjct: 335 MQQFPDWQTSALCDGLHFTPLGNKILFDCVLETLES 442
Score = 56.5 bits (117), Expect(2) = 1e-022
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
SIGFSQ L DLPLFH+IDPKDP+KAF
Sbjct: 440 SIGFSQGSLQPDLPLFHDIDPKDPLKAF 523
>gb|CV721442.1|CV721442 YBH--04-C09.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--04-C09, mRNA sequence
Length = 453
Score = 97.3 bits (206), Expect(2) = 1e-022
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +2 / +3
Query: 110 LKLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
+KLGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 9 VKLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 152
Score = 33.6 bits (67), Expect(2) = 1e-022
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 207 YCGRSVPSGFQC 242
>gb|CV723313.1|CV723313 root--03-D03.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-D03, mRNA sequence
Length = 484
Score = 95.5 bits (202), Expect(2) = 5e-022
Identities = 38/47 (80%), Positives = 42/47 (89%)
Frame = +2 / -1
Query: 113 KLGVCANLLNGLINATLGTPPRTPCCTLIQGLADLKAAVGLCTVLRA 253
+LGVCAN+LNGLIN LGTPPR PCC+LIQGLADL+AAV LCT LRA
Sbjct: 460 RLGVCANVLNGLINVQLGTPPRQPCCSLIQGLADLEAAVCLCTALRA 320
Score = 33.6 bits (67), Expect(2) = 5e-022
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2 / -1
Query: 308 YCGRRVPSGFQC 343
YCGR VPSGFQC
Sbjct: 265 YCGRSVPSGFQC 230
>gb|C20136.2|C20136 C20136 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11568, mRNA sequence
Length = 365
Score = 68.9 bits (144), Expect(2) = 6e-021
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +3 / +2
Query: 576 FPDWQTSALSDGLHFTPVGNKILFEEVVKTLET 674
FPDWQTSAL DGLHFTP+GNKILF+ V++TLE+
Sbjct: 2 FPDWQTSALCDGLHFTPLGNKILFDCVLETLES 100
Score = 56.5 bits (117), Expect(2) = 6e-021
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +3 / +2
Query: 675 SIGFSQERLPSDLPLFHEIDPKDPMKAF 758
SIGFSQ L DLPLFH+IDPKDP+KAF
Sbjct: 98 SIGFSQGSLQPDLPLFHDIDPKDPLKAF 181
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,159,978,694
Number of Sequences: 438736
Number of extensions: 74693924
Number of successful extensions: 1598678
Number of sequences better than 1.0e-020: 31
length of database: 933,473,305
effective HSP length: 60
effective length of database: 907,149,145
effective search space used: 244023120005
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)