TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418885.2.3
(568 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK063196.1| Oryza sativa (japonica cultivar-group) cDNA... 106 2e-021
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 106 2e-021
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 106 2e-021
gb|AC084023.8| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 106 2e-021
>dbj|AK063196.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C03, full
insert sequence
Length = 503
Score = 106 bits (227), Expect = 2e-021
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3 / +2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L +C A + G+ P+A+CCS LRAQ C C YA++P +A YIN+ N KT TSCG
Sbjct: 158 CNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCG 337
Query: 450 IAIPKC*ASALRRRFA 497
IAIP+C*A ++ RR A
Sbjct: 338 IAIPRC*ARSISRRRA 385
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 106 bits (227), Expect = 2e-021
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3 / -3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L +C A + G+ P+A+CCS LRAQ C C YA++P +A YIN+ N KT TSCG
Sbjct: 738554 CNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCG 738375
Query: 450 IAIPKC*ASALRRRFA 497
IAIP+C*A ++ RR A
Sbjct: 738374 IAIPRC*ARSISRRRA 738327
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 106 bits (227), Expect = 2e-021
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3 / -3
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L +C A + G+ P+A+CCS LRAQ C C YA++P +A YIN+ N KT TSCG
Sbjct: 18816360 CNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCG 18816181
Query: 450 IAIPKC*ASALRRRFA 497
IAIP+C*A ++ RR A
Sbjct: 18816180 IAIPRC*ARSISRRRA 18816133
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05
map S21174S, complete sequence
Length = 178867
Score = 106 bits (227), Expect = 2e-021
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3 / -2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L +C A + G+ P+A+CCS LRAQ C C YA++P +A YIN+ N KT TSCG
Sbjct: 114096 CNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCG 113917
Query: 450 IAIPKC*ASALRRRFA 497
IAIP+C*A ++ RR A
Sbjct: 113916 IAIPRC*ARSISRRRA 113869
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 106 bits (227), Expect = 2e-021
Identities = 40/76 (52%), Positives = 53/76 (69%)
Frame = +3 / -2
Query: 270 CDPKPLVVCDPAFMDGAKPAAACCSTLRAQEACLCVYAKDPKFAKYINNPNTAKTFTSCG 449
C+ L +C A + G+ P+A+CCS LRAQ C C YA++P +A YIN+ N KT TSCG
Sbjct: 18827614 CNAGQLAICAGAIIGGSTPSASCCSNLRAQRGCFCQYARNPAYASYINSANARKTLTSCG 18827435
Query: 450 IAIPKC*ASALRRRFA 497
IAIP+C*A ++ RR A
Sbjct: 18827434 IAIPRC*ARSISRRRA 18827387
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,552,576,120
Number of Sequences: 438736
Number of extensions: 49226983
Number of successful extensions: 439169
Number of sequences better than 1.0e-020: 8
length of database: 933,473,305
effective HSP length: 58
effective length of database: 908,026,617
effective search space used: 118043460210
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)