TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK103235.1| Oryza sativa (japonica cultivar-group) cDNA... 262 e-112
ref|XM_468522.1| Oryza sativa (japonica cultivar-group), mRNA 262 e-112
dbj|AB037145.1| Oryza sativa (japonica cultivar-group) OsRP... 259 e-110
gb|AACV01005677.1| Oryza sativa (japonica cultivar-group) c... 71 7e-066
dbj|AP004043.3| Oryza sativa (japonica cultivar-group) geno... 71 3e-057
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 62 6e-048
gb|AU183932.1|AU183932 AU183932 Rice cDNA from immature lea... 122 5e-047
dbj|AK073723.1| Oryza sativa (japonica cultivar-group) cDNA... 147 1e-045
ref|XM_466911.1| Oryza sativa (japonica cultivar-group), mRNA 147 1e-045
dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA... 141 2e-033
gb|AU030219.1|AU030219 AU030219 Rice cDNA from immature lea... 71 5e-025
>dbj|AK103235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123F02, full
insert sequence
Length = 1198
Score = 262 bits (567), Expect(4) = e-112
Identities = 107/157 (68%), Positives = 127/157 (80%)
Frame = +2 / +3
Query: 221 QQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD 400
Q TG+KGAPF+V+GVE AN+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRWVND +D
Sbjct: 276 QSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGAD 455
Query: 401 SFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELK 580
S ETAA+QNGMY++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + +
Sbjct: 456 SAETAAVQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQ 635
Query: 581 AGSPARISSSMGVSFSNGFXXXXXXXXXXXXXAPVTS 691
GSPA+ S+MG S SNGF APV S
Sbjct: 636 IGSPAKTYSAMGSSSSNGFSEMTTPTSVKSNPAPVLS 746
Score = 204 bits (441), Expect(4) = 4e-087
Identities = 95/146 (65%), Positives = 106/146 (72%)
Frame = -2 / -3
Query: 685 HRCWTGFQRCRCA*FTESI*E*HSHRRTDSCRTASL*FNVLYMHPNTLNEMQRNLIEIGY 506
H C GF R R FTE+I * SH R CR +L*F VL MH + LNEMQ +LI I Y
Sbjct: 740 HWCRVGFHRGRSGHFTEAIGR*GSHGRICFCRATNL*FGVL*MHSHALNEMQCDLIIISY 561
Query: 505 RPD*ESSSTLPLLQSLEASNDRNVHTILNSSSFKRI*SIIHPSDEIEAAGAIVEREGHIG 326
RPD ESSSTLPLL+ LEA+NDRN+H+ILNSS F RI +II PSDEIEAAGAIV+REGHIG
Sbjct: 560 RPDSESSSTLPLLKPLEATNDRNIHSILNSSGFSRISTIIDPSDEIEAAGAIVDREGHIG 381
Query: 325 RPLHLGIDHPHKSNVSHLDAIDDERS 248
PL L D HK NV LDA+DDE S
Sbjct: 380 VPLRLATDQSHKPNVGCLDAVDDEGS 303
Score = 159 bits (341), Expect(2) = 9e-044
Identities = 74/106 (69%), Positives = 82/106 (77%)
Frame = -3 / -1
Query: 690 LVTGAGLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFNSMFSICIRTH*MKCSVTSLKS 511
L TGAGLDF +VGV+ SL P E++ P+ E + AGLP + +FS CIRTH*MKCSVTSL S
Sbjct: 745 LSTGAGLDFTEVGVVISLKPLEDEDPMAEYVFAGLPICDLVFSKCIRTH*MKCSVTSL*S 566
Query: 510 VIGLIEKAVARFLSCSPLRLPMTAMYIPF*IAAVSKESEASFTHLM 373
V GLI KAVARFLS SPLRLPMT YIPF* AAVS ES S THLM
Sbjct: 565 VTGLIAKAVARFLS*SPLRLPMTETYIPF*TAAVSAESAPSLTHLM 428
Score = 156 bits (336), Expect(3) = 2e-055
Identities = 67/118 (56%), Positives = 79/118 (66%)
Frame = +1 / +2
Query: 337 LHARRWHRPPRFHQMGE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRF 516
LH RRWHRPPRFHQMG+* F *N C SEW V HW PQG + EEACYCF QA N
Sbjct: 392 LHDRRWHRPPRFHQMGQ*WC*FC*NRCCSEWNVCFCHW*PQGASGEEACYCFRYQACN*L 571
Query: 517 Q*GYAAFHSVCSDAYREH*IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEIQSSTGDQ 690
*G+ AFHSV ++A+REH I W C N F +G +I +W+Q* H+D+ EIQ T Q
Sbjct: 572 **GHTAFHSVRANAFREHQITDW*PCKNIFCHGILIFQWLQ*NDHSDLCEIQPGTSAQ 745
Score = 128 bits (275), Expect(3) = 1e-031
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = +3 / +1
Query: 282 TFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MMXXXXXXXXXFRMVCTLRSLEASR 461
T LW WS+ R SG PM PSRSTMAPAASISSDG MM FRM C SL ASR
Sbjct: 337 TLGLWDWSVARRSGTPMCPSRSTMAPAASISSDGSMMVLILLKPLLFRMECMFLSLVASR 516
Query: 462 DCKRXXXXXXXXXXXXPISMRLRCISFSVFGCI*RTLN*RLAVLHESVLLWECHSQMDSV 641
+R I MR CISFS CI*RT N RL L + +L W+ H M SV
Sbjct: 517 GFRRGSVLLLSLSGL*LIIMRSHCISFSACECI*RTPNHRLVALQKHILPWDPHLPMASV 696
Query: 642 NQAHRHL*NPVQHR 683
R L*NP +H+
Sbjct: 697 K*PLRPL*NPTRHQ 738
Score = 127 bits (273), Expect = 2e-027
Identities = 63/106 (59%), Positives = 75/106 (70%)
Frame = -1 / -2
Query: 671 WISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL*A*LR 492
WIS+ S H* H +M +P +N F+Q Q +I CSL A TE*NA *PH N+L A* R
Sbjct: 726 WISQRSEWSFH*SHWKMRIPWQNMFLQGYQSVIWCSLNAFARTE*NAV*PHYNQLQA**R 547
Query: 491 KQ*HASSLAVP*GFQ*PQCTYHSE*QQFQKNLKHHSPI**NRGGRC 354
KQ*HASS P*G+Q* + T+HSE Q+FQ+N HH PI**NRGGRC
Sbjct: 546 KQ*HASSPEAP*GYQ*QKHTFHSEQQRFQQNQHHH*PI**NRGGRC 409
Score = 104 bits (222), Expect(4) = 4e-087
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = -3 / -1
Query: 234 VPDCCASTTCFTVSGMVLDAPRILEGVVESAAAFWEEVNCDGEKS 100
+PDCCAS CFTVSGMVLDAPR+LEGVVESAAAFWEEVNCDGEK+
Sbjct: 286 MPDCCASEICFTVSGMVLDAPRLLEGVVESAAAFWEEVNCDGEKA 152
Score = 91.3 bits (193), Expect(4) = e-112
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +2 / +3
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG 232
FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG
Sbjct: 156 FSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSG 284
Score = 71.2 bits (149), Expect(4) = e-112
Identities = 26/39 (66%), Positives = 34/39 (87%)
Frame = +2 / +3
Query: 689 SGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
+ S TDL+T+VLN F EPAN+ESEHGVH+DE++KRF+L
Sbjct: 750 TNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRFRL 866
Score = 62.0 bits (129), Expect(3) = 2e-055
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +1 / +2
Query: 100 RLLAVAVHLLPECRRRLHHAFQDARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRR 273
RLLAVAVHLLPECRRRL+H FQ+ R++ +WH R R+ RR
Sbjct: 152 RLLAVAVHLLPECRRRLYHPFQEPGRIEHHAAHREADL*SAAIWHHRGEGRSLRRRRR 325
Score = 44.6 bits (91), Expect(4) = e-112
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2 / +3
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 864 LPEAKIKVAIDYLADIGHIYSTIDESHYKS 953
Score = 43.2 bits (88), Expect(2) = 9e-044
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3 / -1
Query: 312 LALTIPTSRMLAISTPLTMNGAPLSPVPDCCAST 211
L LT PTS LA+STP T GAP SPV C ++
Sbjct: 367 LPLTNPTSLTLAVSTPSTTKGAPFSPVMPDCCAS 266
Score = 42.8 bits (87), Expect(4) = 4e-087
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -2 / -3
Query: 799 EPLEYFINVHPMLTLEVRWFIKKIQDLRVQIS 704
E L FINVH ML L+V WF + IQ VQIS
Sbjct: 860 EALHDFINVHTMLALDVCWFAENIQHFCVQIS 765
Score = 41.4 bits (84), Expect(3) = 2e-055
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3 / +1
Query: 705 LICTRRS*IFLMNQRTSRVSMGCTLMKYSSGSNFCRRSRSRMLLITI 845
LI T++ *+F NQ+TSR SM CTLMK S S + R +L+ ++
Sbjct: 766 LI*TQKC*MFSANQQTSRASMVCTLMKS*SASGYRRPRSR*LLITSL 906
Score = 35.4 bits (71), Expect(3) = 1e-031
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3 / +1
Query: 810 RRSRSRMLLITIWTRGVFTQQLMNSTTRQLNRFEG 914
RR RSR LLIT T G +TQQ + TT Q + +G
Sbjct: 868 RRPRSR*LLITSLTLGTYTQQSTSLTTSQRSMNKG 972
Score = 32.7 bits (65), Expect(4) = 4e-087
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2 / -3
Query: 892 LVVEFINC*VKTPRVHIVINSIRDLLLR 809
LVV ++C*V P V VINS DL LR
Sbjct: 950 LVVRLVDC*VYVPNVSEVINSYLDLGLR 867
Score = 21.7 bits (41), Expect(3) = 1e-031
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +2
Query: 232 HGRQGRSVHRQWRRD 276
H +GRS+ R+ RRD
Sbjct: 287 HRGEGRSLRRRRRRD 331
>ref|XM_468522.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1198
Score = 262 bits (567), Expect(4) = e-112
Identities = 107/157 (68%), Positives = 127/157 (80%)
Frame = +2 / +3
Query: 221 QQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD 400
Q TG+KGAPF+V+GVE AN+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRWVND +D
Sbjct: 276 QSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGAD 455
Query: 401 SFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELK 580
S ETAA+QNGMY++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + +
Sbjct: 456 SAETAAVQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQ 635
Query: 581 AGSPARISSSMGVSFSNGFXXXXXXXXXXXXXAPVTS 691
GSPA+ S+MG S SNGF APV S
Sbjct: 636 IGSPAKTYSAMGSSSSNGFSEMTTPTSVKSNPAPVLS 746
Score = 204 bits (441), Expect(4) = 4e-087
Identities = 95/146 (65%), Positives = 106/146 (72%)
Frame = -2 / -3
Query: 685 HRCWTGFQRCRCA*FTESI*E*HSHRRTDSCRTASL*FNVLYMHPNTLNEMQRNLIEIGY 506
H C GF R R FTE+I * SH R CR +L*F VL MH + LNEMQ +LI I Y
Sbjct: 740 HWCRVGFHRGRSGHFTEAIGR*GSHGRICFCRATNL*FGVL*MHSHALNEMQCDLIIISY 561
Query: 505 RPD*ESSSTLPLLQSLEASNDRNVHTILNSSSFKRI*SIIHPSDEIEAAGAIVEREGHIG 326
RPD ESSSTLPLL+ LEA+NDRN+H+ILNSS F RI +II PSDEIEAAGAIV+REGHIG
Sbjct: 560 RPDSESSSTLPLLKPLEATNDRNIHSILNSSGFSRISTIIDPSDEIEAAGAIVDREGHIG 381
Query: 325 RPLHLGIDHPHKSNVSHLDAIDDERS 248
PL L D HK NV LDA+DDE S
Sbjct: 380 VPLRLATDQSHKPNVGCLDAVDDEGS 303
Score = 159 bits (341), Expect(2) = 9e-044
Identities = 74/106 (69%), Positives = 82/106 (77%)
Frame = -3 / -1
Query: 690 LVTGAGLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFNSMFSICIRTH*MKCSVTSLKS 511
L TGAGLDF +VGV+ SL P E++ P+ E + AGLP + +FS CIRTH*MKCSVTSL S
Sbjct: 745 LSTGAGLDFTEVGVVISLKPLEDEDPMAEYVFAGLPICDLVFSKCIRTH*MKCSVTSL*S 566
Query: 510 VIGLIEKAVARFLSCSPLRLPMTAMYIPF*IAAVSKESEASFTHLM 373
V GLI KAVARFLS SPLRLPMT YIPF* AAVS ES S THLM
Sbjct: 565 VTGLIAKAVARFLS*SPLRLPMTETYIPF*TAAVSAESAPSLTHLM 428
Score = 156 bits (336), Expect(3) = 2e-055
Identities = 67/118 (56%), Positives = 79/118 (66%)
Frame = +1 / +2
Query: 337 LHARRWHRPPRFHQMGE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRF 516
LH RRWHRPPRFHQMG+* F *N C SEW V HW PQG + EEACYCF QA N
Sbjct: 392 LHDRRWHRPPRFHQMGQ*WC*FC*NRCCSEWNVCFCHW*PQGASGEEACYCFRYQACN*L 571
Query: 517 Q*GYAAFHSVCSDAYREH*IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEIQSSTGDQ 690
*G+ AFHSV ++A+REH I W C N F +G +I +W+Q* H+D+ EIQ T Q
Sbjct: 572 **GHTAFHSVRANAFREHQITDW*PCKNIFCHGILIFQWLQ*NDHSDLCEIQPGTSAQ 745
Score = 128 bits (275), Expect(3) = 1e-031
Identities = 67/134 (50%), Positives = 74/134 (55%)
Frame = +3 / +1
Query: 282 TFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MMXXXXXXXXXFRMVCTLRSLEASR 461
T LW WS+ R SG PM PSRSTMAPAASISSDG MM FRM C SL ASR
Sbjct: 337 TLGLWDWSVARRSGTPMCPSRSTMAPAASISSDGSMMVLILLKPLLFRMECMFLSLVASR 516
Query: 462 DCKRXXXXXXXXXXXXPISMRLRCISFSVFGCI*RTLN*RLAVLHESVLLWECHSQMDSV 641
+R I MR CISFS CI*RT N RL L + +L W+ H M SV
Sbjct: 517 GFRRGSVLLLSLSGL*LIIMRSHCISFSACECI*RTPNHRLVALQKHILPWDPHLPMASV 696
Query: 642 NQAHRHL*NPVQHR 683
R L*NP +H+
Sbjct: 697 K*PLRPL*NPTRHQ 738
Score = 127 bits (273), Expect = 2e-027
Identities = 63/106 (59%), Positives = 75/106 (70%)
Frame = -1 / -2
Query: 671 WISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL*A*LR 492
WIS+ S H* H +M +P +N F+Q Q +I CSL A TE*NA *PH N+L A* R
Sbjct: 726 WISQRSEWSFH*SHWKMRIPWQNMFLQGYQSVIWCSLNAFARTE*NAV*PHYNQLQA**R 547
Query: 491 KQ*HASSLAVP*GFQ*PQCTYHSE*QQFQKNLKHHSPI**NRGGRC 354
KQ*HASS P*G+Q* + T+HSE Q+FQ+N HH PI**NRGGRC
Sbjct: 546 KQ*HASSPEAP*GYQ*QKHTFHSEQQRFQQNQHHH*PI**NRGGRC 409
Score = 104 bits (222), Expect(4) = 4e-087
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = -3 / -1
Query: 234 VPDCCASTTCFTVSGMVLDAPRILEGVVESAAAFWEEVNCDGEKS 100
+PDCCAS CFTVSGMVLDAPR+LEGVVESAAAFWEEVNCDGEK+
Sbjct: 286 MPDCCASEICFTVSGMVLDAPRLLEGVVESAAAFWEEVNCDGEKA 152
Score = 91.3 bits (193), Expect(4) = e-112
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +2 / +3
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG 232
FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG
Sbjct: 156 FSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSG 284
Score = 71.2 bits (149), Expect(4) = e-112
Identities = 26/39 (66%), Positives = 34/39 (87%)
Frame = +2 / +3
Query: 689 SGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
+ S TDL+T+VLN F EPAN+ESEHGVH+DE++KRF+L
Sbjct: 750 TNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRFRL 866
Score = 62.0 bits (129), Expect(3) = 2e-055
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +1 / +2
Query: 100 RLLAVAVHLLPECRRRLHHAFQDARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRR 273
RLLAVAVHLLPECRRRL+H FQ+ R++ +WH R R+ RR
Sbjct: 152 RLLAVAVHLLPECRRRLYHPFQEPGRIEHHAAHREADL*SAAIWHHRGEGRSLRRRRR 325
Score = 44.6 bits (91), Expect(4) = e-112
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2 / +3
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 864 LPEAKIKVAIDYLADIGHIYSTIDESHYKS 953
Score = 43.2 bits (88), Expect(2) = 9e-044
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3 / -1
Query: 312 LALTIPTSRMLAISTPLTMNGAPLSPVPDCCAST 211
L LT PTS LA+STP T GAP SPV C ++
Sbjct: 367 LPLTNPTSLTLAVSTPSTTKGAPFSPVMPDCCAS 266
Score = 42.8 bits (87), Expect(4) = 4e-087
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -2 / -3
Query: 799 EPLEYFINVHPMLTLEVRWFIKKIQDLRVQIS 704
E L FINVH ML L+V WF + IQ VQIS
Sbjct: 860 EALHDFINVHTMLALDVCWFAENIQHFCVQIS 765
Score = 41.4 bits (84), Expect(3) = 2e-055
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3 / +1
Query: 705 LICTRRS*IFLMNQRTSRVSMGCTLMKYSSGSNFCRRSRSRMLLITI 845
LI T++ *+F NQ+TSR SM CTLMK S S + R +L+ ++
Sbjct: 766 LI*TQKC*MFSANQQTSRASMVCTLMKS*SASGYRRPRSR*LLITSL 906
Score = 35.4 bits (71), Expect(3) = 1e-031
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3 / +1
Query: 810 RRSRSRMLLITIWTRGVFTQQLMNSTTRQLNRFEG 914
RR RSR LLIT T G +TQQ + TT Q + +G
Sbjct: 868 RRPRSR*LLITSLTLGTYTQQSTSLTTSQRSMNKG 972
Score = 32.7 bits (65), Expect(4) = 4e-087
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2 / -3
Query: 892 LVVEFINC*VKTPRVHIVINSIRDLLLR 809
LVV ++C*V P V VINS DL LR
Sbjct: 950 LVVRLVDC*VYVPNVSEVINSYLDLGLR 867
Score = 21.7 bits (41), Expect(3) = 1e-031
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +2
Query: 232 HGRQGRSVHRQWRRD 276
H +GRS+ R+ RRD
Sbjct: 287 HRGEGRSLRRRRRRD 331
>dbj|AB037145.1| Oryza sativa (japonica cultivar-group) OsRPA32 mRNA for replication
protein A 30kDa, complete cds
Length = 1204
Score = 259 bits (561), Expect(4) = e-110
Identities = 106/157 (67%), Positives = 126/157 (80%)
Frame = +2 / +3
Query: 221 QQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD 400
Q TG+KGAPF+V+GVE AN+RLVG+V+ K ER TDV+F +DDGTGRLDFIRWVND +D
Sbjct: 267 QSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFMIDDGTGRLDFIRWVNDGAD 446
Query: 401 SFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELK 580
S ETAA+QNGMY++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + +
Sbjct: 447 SAETAAVQNGMYVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQ 626
Query: 581 AGSPARISSSMGVSFSNGFXXXXXXXXXXXXXAPVTS 691
GSPA+ S+MG S SNGF APV S
Sbjct: 627 IGSPAKTYSAMGSSSSNGFSEMTTPTSVKSNPAPVLS 737
Score = 202 bits (436), Expect(4) = 2e-086
Identities = 94/146 (64%), Positives = 105/146 (71%)
Frame = -2 / -3
Query: 685 HRCWTGFQRCRCA*FTESI*E*HSHRRTDSCRTASL*FNVLYMHPNTLNEMQRNLIEIGY 506
H C GF R R FTE+I * SH R CR +L*F VL MH + LNEMQ +LI I Y
Sbjct: 731 HWCRVGFHRGRSGHFTEAIGR*GSHGRICFCRATNL*FGVL*MHSHALNEMQCDLIIISY 552
Query: 505 RPD*ESSSTLPLLQSLEASNDRNVHTILNSSSFKRI*SIIHPSDEIEAAGAIVEREGHIG 326
RPD ESSSTLPLL+ LEA+NDRN+H+ILNSS F RI +II PSDEIEAAGAIV+ EGHIG
Sbjct: 551 RPDSESSSTLPLLKPLEATNDRNIHSILNSSGFSRISTIIDPSDEIEAAGAIVDHEGHIG 372
Query: 325 RPLHLGIDHPHKSNVSHLDAIDDERS 248
PL L D HK NV LDA+DDE S
Sbjct: 371 VPLRLATDQSHKPNVGCLDAVDDEGS 294
Score = 159 bits (341), Expect(2) = 9e-044
Identities = 74/106 (69%), Positives = 82/106 (77%)
Frame = -3 / -1
Query: 690 LVTGAGLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFNSMFSICIRTH*MKCSVTSLKS 511
L TGAGLDF +VGV+ SL P E++ P+ E + AGLP + +FS CIRTH*MKCSVTSL S
Sbjct: 736 LSTGAGLDFTEVGVVISLKPLEDEDPMAEYVFAGLPICDLVFSKCIRTH*MKCSVTSL*S 557
Query: 510 VIGLIEKAVARFLSCSPLRLPMTAMYIPF*IAAVSKESEASFTHLM 373
V GLI KAVARFLS SPLRLPMT YIPF* AAVS ES S THLM
Sbjct: 556 VTGLIAKAVARFLS*SPLRLPMTETYIPF*TAAVSAESAPSLTHLM 419
Score = 156 bits (336), Expect(3) = 2e-055
Identities = 67/118 (56%), Positives = 79/118 (66%)
Frame = +1 / +2
Query: 337 LHARRWHRPPRFHQMGE*CFRFF*NCCYSEWYVHCGHWKPQGTAREEACYCFLNQAYNRF 516
LH RRWHRPPRFHQMG+* F *N C SEW V HW PQG + EEACYCF QA N
Sbjct: 383 LHDRRWHRPPRFHQMGQ*WC*FC*NRCCSEWNVCFCHW*PQGASGEEACYCFRYQACN*L 562
Query: 517 Q*GYAAFHSVCSDAYREH*IKGWQSCTNQFFYGSVILKWIQ*IKHTDIFEIQSSTGDQ 690
*G+ AFHSV ++A+REH I W C N F +G +I +W+Q* H+D+ EIQ T Q
Sbjct: 563 **GHTAFHSVRANAFREHQITDW*PCKNIFCHGILIFQWLQ*NDHSDLCEIQPGTSAQ 736
Score = 127 bits (273), Expect = 2e-027
Identities = 63/106 (59%), Positives = 75/106 (70%)
Frame = -1 / -2
Query: 671 WISKMSVCLIH*IHLRMTLP*KN*FVQDCQPLIQCSLYASEHTE*NAA*PH*NRL*A*LR 492
WIS+ S H* H +M +P +N F+Q Q +I CSL A TE*NA *PH N+L A* R
Sbjct: 717 WISQRSEWSFH*SHWKMRIPWQNMFLQGYQSVIWCSLNAFARTE*NAV*PHYNQLQA**R 538
Query: 491 KQ*HASSLAVP*GFQ*PQCTYHSE*QQFQKNLKHHSPI**NRGGRC 354
KQ*HASS P*G+Q* + T+HSE Q+FQ+N HH PI**NRGGRC
Sbjct: 537 KQ*HASSPEAP*GYQ*QKHTFHSEQQRFQQNQHHH*PI**NRGGRC 400
Score = 124 bits (266), Expect(3) = 2e-030
Identities = 66/134 (49%), Positives = 73/134 (54%)
Frame = +3 / +1
Query: 282 TFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MMXXXXXXXXXFRMVCTLRSLEASR 461
T LW WS+ R SG PM PS STMAPAASISSDG MM FRM C SL ASR
Sbjct: 328 TLGLWDWSVARRSGTPMCPS*STMAPAASISSDGSMMVLILLKPLLFRMECMFLSLVASR 507
Query: 462 DCKRXXXXXXXXXXXXPISMRLRCISFSVFGCI*RTLN*RLAVLHESVLLWECHSQMDSV 641
+R I MR CISFS CI*RT N RL L + +L W+ H M SV
Sbjct: 508 GFRRGSVLLLSLSGL*LIIMRSHCISFSACECI*RTPNHRLVALQKHILPWDPHLPMASV 687
Query: 642 NQAHRHL*NPVQHR 683
R L*NP +H+
Sbjct: 688 K*PLRPL*NPTRHQ 729
Score = 104 bits (222), Expect(4) = 2e-086
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = -3 / -1
Query: 234 VPDCCASTTCFTVSGMVLDAPRILEGVVESAAAFWEEVNCDGEKS 100
+PDCCAS CFTVSGMVLDAPR+LEGVVESAAAFWEEVNCDGEK+
Sbjct: 277 MPDCCASEICFTVSGMVLDAPRLLEGVVESAAAFWEEVNCDGEKA 143
Score = 91.3 bits (193), Expect(4) = e-110
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +2 / +3
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG 232
FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG
Sbjct: 147 FSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSG 275
Score = 68.4 bits (143), Expect(4) = e-110
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +2 / +3
Query: 689 SGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
+ S TDL+T+VLN F EPAN+ESEHGVH+DE++KR +L
Sbjct: 741 TNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRLRL 857
Score = 62.0 bits (129), Expect(3) = 2e-055
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +1 / +2
Query: 100 RLLAVAVHLLPECRRRLHHAFQDARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRR 273
RLLAVAVHLLPECRRRL+H FQ+ R++ +WH R R+ RR
Sbjct: 143 RLLAVAVHLLPECRRRLYHPFQEPGRIEHHAAHREADL*SAAIWHHRGEGRSLRRRRR 316
Score = 44.6 bits (91), Expect(4) = e-110
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2 / +3
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 855 LPEAKIKVAIDYLADIGHIYSTIDESHYKS 944
Score = 43.2 bits (88), Expect(2) = 9e-044
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = -3 / -1
Query: 312 LALTIPTSRMLAISTPLTMNGAPLSPVPDCCAST 211
L LT PTS LA+STP T GAP SPV C ++
Sbjct: 358 LPLTNPTSLTLAVSTPSTTKGAPFSPVMPDCCAS 257
Score = 42.8 bits (87), Expect(4) = 2e-086
Identities = 19/32 (59%), Positives = 21/32 (65%)
Frame = -2 / -3
Query: 799 EPLEYFINVHPMLTLEVRWFIKKIQDLRVQIS 704
E L FINVH ML L+V WF + IQ VQIS
Sbjct: 851 EALHDFINVHTMLALDVCWFAENIQHFCVQIS 756
Score = 41.4 bits (84), Expect(3) = 2e-055
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3 / +1
Query: 705 LICTRRS*IFLMNQRTSRVSMGCTLMKYSSGSNFCRRSRSRMLLITI 845
LI T++ *+F NQ+TSR SM CTLMK S S + R +L+ ++
Sbjct: 757 LI*TQKC*MFSANQQTSRASMVCTLMKS*SASGYRRPRSR*LLITSL 897
Score = 35.4 bits (71), Expect(3) = 2e-030
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3 / +1
Query: 810 RRSRSRMLLITIWTRGVFTQQLMNSTTRQLNRFEG 914
RR RSR LLIT T G +TQQ + TT Q + +G
Sbjct: 859 RRPRSR*LLITSLTLGTYTQQSTSLTTSQRSMNKG 963
Score = 32.7 bits (65), Expect(4) = 2e-086
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = -2 / -3
Query: 892 LVVEFINC*VKTPRVHIVINSIRDLLLR 809
LVV ++C*V P V VINS DL LR
Sbjct: 941 LVVRLVDC*VYVPNVSEVINSYLDLGLR 858
Score = 21.7 bits (41), Expect(3) = 2e-030
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +2
Query: 232 HGRQGRSVHRQWRRD 276
H +GRS+ R+ RRD
Sbjct: 278 HRGEGRSLRRRRRRD 322
>gb|AACV01005677.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005677, whole
genome shotgun sequence
Length = 14560
Score = 71.2 bits (149), Expect(6) = 2e-028
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +2 / +2
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSL 457
+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRW +DS + + + +++ + SL
Sbjct: 11390 VRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRW*AHFADSIASVSS*SILFLLQLPSL 11563
Score = 61.6 bits (128), Expect(8) = 2e-052
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -2 / -1
Query: 382 PSDEIEAAGAIVEREGHIGRPLHLGIDHPHKSNV 281
PSDEIEAAGAIV+REGHIG PL L D HK N+
Sbjct: 11488 PSDEIEAAGAIVDREGHIGVPLRLATDQSHKPNL 11387
Score = 60.2 bits (125), Expect(10) = 7e-066
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +2 / +2
Query: 422 QNGMYIAVIGSLKGLQERKRATAFSIRPIT 511
+NGMY++VIGSLKGLQERKRATAF+IR +T
Sbjct: 12068 RNGMYVSVIGSLKGLQERKRATAFAIRYVT 12157
Score = 60.2 bits (125), Expect(10) = 7e-066
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +3 / +3
Query: 291 LWGWSMPRWSGRPM*PSRSTMAPAASISSDG 383
LW WS+ R SG PM PSRSTMAPAASISSDG
Sbjct: 11397 LWDWSVARRSGTPMCPSRSTMAPAASISSDG 11489
Score = 57.9 bits (120), Expect(10) = 7e-066
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2 / +2
Query: 500 RPITDFNEVTLHFIQCVRMHIEN 568
RP+TD+NEVTLHFIQCVRMH+EN
Sbjct: 12227 RPVTDYNEVTLHFIQCVRMHLEN 12295
Score = 54.7 bits (113), Expect(8) = 2e-052
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / -3
Query: 165 LEGVVESAAAFWEEVNCDGEKS 100
LEGVVESAAAFWEEVNCDGEK+
Sbjct: 11081 LEGVVESAAAFWEEVNCDGEKA 11016
Score = 52.8 bits (109), Expect(8) = 2e-052
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -3 / -1
Query: 234 VPDCCASTTCFTVSGMVLDAPRI 166
+PDCCAS CFTVSGMVLDAPR+
Sbjct: 11242 MPDCCASEICFTVSGMVLDAPRL 11174
Score = 51.9 bits (107), Expect(8) = 2e-052
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / -1
Query: 508 YRPD*ESSSTLPLLQSLEASNDRNVHTI 425
Y PD ESSSTLPLL+ LEA+NDRN+H+I
Sbjct: 12154 YVPDSESSSTLPLLKPLEATNDRNIHSI 12071
Score = 51.0 bits (105), Expect(6) = 2e-028
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +2 / +1
Query: 104 FSPSQFTSSQNAAADSTTPSKM 169
FSPSQFTSSQNAAADSTTPSK+
Sbjct: 11020 FSPSQFTSSQNAAADSTTPSKV 11085
Score = 51.0 bits (105), Expect(10) = 7e-066
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / +3
Query: 100 RLLAVAVHLLPECRRRLHHAFQ 165
RLLAVAVHLLPECRRRL+H FQ
Sbjct: 11016 RLLAVAVHLLPECRRRLYHPFQ 11081
Score = 45.5 bits (93), Expect(8) = 2e-052
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3 / -2
Query: 570 MFSICIRTH*MKCSVTSLKSVIGL 499
+FS CIRTH*MKCSVTSL SV GL
Sbjct: 12297 VFSKCIRTH*MKCSVTSL*SVTGL 12226
Score = 45.1 bits (92), Expect(8) = 2e-052
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3 / -3
Query: 675 GLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFN 574
GLDF +VGV+ SL P E++ P+ E + AGLP ++
Sbjct: 12527 GLDFTEVGVVISLKPLEDEDPMAEYVFAGLPIYS 12426
Score = 44.1 bits (90), Expect(10) = 7e-066
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2 / +3
Query: 170 RGASSTMPLTVKQVVDAQQSG 232
RGASSTMPLTVKQ+ +AQQSG
Sbjct: 11178 RGASSTMPLTVKQISEAQQSG 11240
Score = 42.3 bits (86), Expect(10) = 7e-066
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2 / +2
Query: 737 NEPANLESEHGVHVDEVLKRFKL 805
NE + ESEHGVH+DE++KRF+L
Sbjct: 13040 NE*TDSESEHGVHIDEIVKRFRL 13108
Score = 39.1 bits (79), Expect(10) = 7e-066
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +1
Query: 830 AIDYNMDSGRLYSTIDEFHYKA 895
AIDY D G +YSTIDE HYK+
Sbjct: 13243 AIDYLADIGHIYSTIDESHYKS 13308
Score = 38.2 bits (77), Expect(10) = 7e-066
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +3
Query: 583 WQSCTNQFFYGSVILKWIQ*IKHTDIFEIQ 672
W C N F +G +I +W+Q* H+D+ EIQ
Sbjct: 12435 W*PCKNIFCHGILIFQWLQ*NDHSDLCEIQ 12524
Score = 38.2 bits (77), Expect(10) = 7e-066
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2 / +3
Query: 221 QQSGTGDKGAPFIVNGVEMANI 286
Q TG+KGAPF+V+GVE AN+
Sbjct: 11232 QSGITGEKGAPFVVDGVETANV 11297
Score = 35.0 bits (70), Expect(6) = 2e-028
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2 / +3
Query: 689 SGSSDTDLHTQVLNFFNEPANLESEH 766
+ S TDL+T+VLN F EPAN+ H
Sbjct: 12627 TNGSKTDLNTEVLNVFREPANV*VAH 12704
Score = 34.5 bits (69), Expect(6) = 2e-028
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1 / +1
Query: 499 QAYNRFQ*GYAAFHSVCSDAYREH*IKG 582
QA N *G+ AFHSV ++A+REH I G
Sbjct: 12226 QACN*L**GHTAFHSVRANAFREHQITG 12309
Score = 33.1 bits (66), Expect(8) = 2e-052
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3 / -1
Query: 282 LAISTPLTMNGAPLSPVPDCCAST 211
LA+STP T GAP SPV C ++
Sbjct: 11293 LAVSTPSTTKGAPFSPVMPDCCAS 11222
Score = 29.5 bits (58), Expect(6) = 2e-028
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2 / +1
Query: 584 GSPARISSSMGVSFSNGF 637
GSPA+ S+MG S SNGF
Sbjct: 12436 GSPAKTYSAMGSSSSNGF 12489
Score = 27.2 bits (53), Expect(10) = 7e-066
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2 / +1
Query: 383 VNDASDSFETAAIQNGMYIAVI 448
VND +DS ETAA+Q IA I
Sbjct: 11893 VNDGADSAETAAVQYVPVIAPI 11958
Score = 27.2 bits (53), Expect(8) = 2e-052
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2 / -2
Query: 892 LVVEFINC*VKTPRVHIVINS 830
LVV ++C*V P V VINS
Sbjct: 13305 LVVRLVDC*VYVPNVSEVINS 13243
Score = 26.7 bits (52), Expect(6) = 2e-028
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3 / +2
Query: 831 LLITIWTRGVFTQQLMNSTTRQLNRFEG 914
LLIT T G +TQQ + TT Q + +G
Sbjct: 13244 LLITSLTLGTYTQQSTSLTTSQRSMNKG 13327
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1124_D06
Length = 102239
Score = 71.2 bits (149), Expect(5) = 1e-023
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = +2 / -1
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSL 457
+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRW +DS + + + +++ + SL
Sbjct: 21146 VRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRW*AHFADSIASVSS*SILFLLQLPSL 20973
Score = 61.6 bits (128), Expect(7) = 1e-045
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -2 / +3
Query: 382 PSDEIEAAGAIVEREGHIGRPLHLGIDHPHKSNV 281
PSDEIEAAGAIV+REGHIG PL L D HK N+
Sbjct: 21048 PSDEIEAAGAIVDREGHIGVPLRLATDQSHKPNL 21149
Score = 60.2 bits (125), Expect(9) = 3e-057
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +2 / -1
Query: 422 QNGMYIAVIGSLKGLQERKRATAFSIRPIT 511
+NGMY++VIGSLKGLQERKRATAF+IR +T
Sbjct: 20468 RNGMYVSVIGSLKGLQERKRATAFAIRYVT 20379
Score = 60.2 bits (125), Expect(9) = 3e-057
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +3 / -2
Query: 291 LWGWSMPRWSGRPM*PSRSTMAPAASISSDG 383
LW WS+ R SG PM PSRSTMAPAASISSDG
Sbjct: 21139 LWDWSVARRSGTPMCPSRSTMAPAASISSDG 21047
Score = 57.9 bits (120), Expect(9) = 3e-057
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2 / -1
Query: 500 RPITDFNEVTLHFIQCVRMHIEN 568
RP+TD+NEVTLHFIQCVRMH+EN
Sbjct: 20309 RPVTDYNEVTLHFIQCVRMHLEN 20241
Score = 54.7 bits (113), Expect(7) = 1e-045
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / +2
Query: 165 LEGVVESAAAFWEEVNCDGEKS 100
LEGVVESAAAFWEEVNCDGEK+
Sbjct: 21455 LEGVVESAAAFWEEVNCDGEKA 21520
Score = 52.8 bits (109), Expect(7) = 1e-045
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 234 VPDCCASTTCFTVSGMVLDAPRI 166
+PDCCAS CFTVSGMVLDAPR+
Sbjct: 21294 MPDCCASEICFTVSGMVLDAPRL 21362
Score = 51.9 bits (107), Expect(7) = 1e-045
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / +3
Query: 508 YRPD*ESSSTLPLLQSLEASNDRNVHTI 425
Y PD ESSSTLPLL+ LEA+NDRN+H+I
Sbjct: 20382 YVPDSESSSTLPLLKPLEATNDRNIHSI 20465
Score = 51.0 bits (105), Expect(5) = 1e-023
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +2 / -3
Query: 104 FSPSQFTSSQNAAADSTTPSKM 169
FSPSQFTSSQNAAADSTTPSK+
Sbjct: 21516 FSPSQFTSSQNAAADSTTPSKV 21451
Score = 51.0 bits (105), Expect(9) = 3e-057
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / -2
Query: 100 RLLAVAVHLLPECRRRLHHAFQ 165
RLLAVAVHLLPECRRRL+H FQ
Sbjct: 21520 RLLAVAVHLLPECRRRLYHPFQ 21455
Score = 45.5 bits (93), Expect(7) = 1e-045
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3 / +1
Query: 570 MFSICIRTH*MKCSVTSLKSVIGL 499
+FS CIRTH*MKCSVTSL SV GL
Sbjct: 20239 VFSKCIRTH*MKCSVTSL*SVTGL 20310
Score = 45.1 bits (92), Expect(7) = 1e-045
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3 / +2
Query: 675 GLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFN 574
GLDF +VGV+ SL P E++ P+ E + AGLP ++
Sbjct: 20009 GLDFTEVGVVISLKPLEDEDPMAEYVFAGLPIYS 20110
Score = 44.1 bits (90), Expect(9) = 3e-057
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2 / -2
Query: 170 RGASSTMPLTVKQVVDAQQSG 232
RGASSTMPLTVKQ+ +AQQSG
Sbjct: 21358 RGASSTMPLTVKQISEAQQSG 21296
Score = 42.3 bits (86), Expect(9) = 3e-057
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2 / -1
Query: 737 NEPANLESEHGVHVDEVLKRFKL 805
NE + ESEHGVH+DE++KRF+L
Sbjct: 19496 NE*TDSESEHGVHIDEIVKRFRL 19428
Score = 39.1 bits (79), Expect(9) = 3e-057
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / -3
Query: 830 AIDYNMDSGRLYSTIDEFHYKA 895
AIDY D G +YSTIDE HYK+
Sbjct: 19293 AIDYLADIGHIYSTIDESHYKS 19228
Score = 38.2 bits (77), Expect(9) = 3e-057
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / -2
Query: 583 WQSCTNQFFYGSVILKWIQ*IKHTDIFEIQ 672
W C N F +G +I +W+Q* H+D+ EIQ
Sbjct: 20101 W*PCKNIFCHGILIFQWLQ*NDHSDLCEIQ 20012
Score = 38.2 bits (77), Expect(9) = 3e-057
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2 / -2
Query: 221 QQSGTGDKGAPFIVNGVEMANI 286
Q TG+KGAPF+V+GVE AN+
Sbjct: 21304 QSGITGEKGAPFVVDGVETANV 21239
Score = 35.0 bits (70), Expect(5) = 1e-023
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2 / -2
Query: 689 SGSSDTDLHTQVLNFFNEPANLESEH 766
+ S TDL+T+VLN F EPAN+ H
Sbjct: 19909 TNGSKTDLNTEVLNVFREPANV*VAH 19832
Score = 34.5 bits (69), Expect(5) = 1e-023
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1 / -3
Query: 499 QAYNRFQ*GYAAFHSVCSDAYREH*IKG 582
QA N *G+ AFHSV ++A+REH I G
Sbjct: 20310 QACN*L**GHTAFHSVRANAFREHQITG 20227
Score = 33.1 bits (66), Expect(7) = 1e-045
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3 / +3
Query: 282 LAISTPLTMNGAPLSPVPDCCAST 211
LA+STP T GAP SPV C ++
Sbjct: 21243 LAVSTPSTTKGAPFSPVMPDCCAS 21314
Score = 29.5 bits (58), Expect(5) = 1e-023
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2 / -3
Query: 584 GSPARISSSMGVSFSNGF 637
GSPA+ S+MG S SNGF
Sbjct: 20100 GSPAKTYSAMGSSSSNGF 20047
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 61.6 bits (128), Expect(7) = 2e-038
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -2 / +3
Query: 382 PSDEIEAAGAIVEREGHIGRPLHLGIDHPHKSNV 281
PSDEIEAAGAIV+REGHIG PL L D HK N+
Sbjct: 1495707 PSDEIEAAGAIVDREGHIGVPLRLATDQSHKPNL 1495808
Score = 60.2 bits (125), Expect(9) = 6e-048
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +2 / -1
Query: 422 QNGMYIAVIGSLKGLQERKRATAFSIRPIT 511
+NGMY++VIGSLKGLQERKRATAF+IR +T
Sbjct: 1495127 RNGMYVSVIGSLKGLQERKRATAFAIRYVT 1495038
Score = 60.2 bits (125), Expect(9) = 6e-048
Identities = 25/31 (80%), Positives = 26/31 (83%)
Frame = +3 / -2
Query: 291 LWGWSMPRWSGRPM*PSRSTMAPAASISSDG 383
LW WS+ R SG PM PSRSTMAPAASISSDG
Sbjct: 1495798 LWDWSVARRSGTPMCPSRSTMAPAASISSDG 1495706
Score = 57.9 bits (120), Expect(9) = 6e-048
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2 / -1
Query: 500 RPITDFNEVTLHFIQCVRMHIEN 568
RP+TD+NEVTLHFIQCVRMH+EN
Sbjct: 1494968 RPVTDYNEVTLHFIQCVRMHLEN 1494900
Score = 54.7 bits (113), Expect(7) = 2e-038
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = -3 / +2
Query: 165 LEGVVESAAAFWEEVNCDGEKS 100
LEGVVESAAAFWEEVNCDGEK+
Sbjct: 1496114 LEGVVESAAAFWEEVNCDGEKA 1496179
Score = 52.8 bits (109), Expect(7) = 2e-038
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -3 / +3
Query: 234 VPDCCASTTCFTVSGMVLDAPRI 166
+PDCCAS CFTVSGMVLDAPR+
Sbjct: 1495953 MPDCCASEICFTVSGMVLDAPRL 1496021
Score = 51.9 bits (107), Expect(7) = 2e-038
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2 / +3
Query: 508 YRPD*ESSSTLPLLQSLEASNDRNVHTI 425
Y PD ESSSTLPLL+ LEA+NDRN+H+I
Sbjct: 1495041 YVPDSESSSTLPLLKPLEATNDRNIHSI 1495124
Score = 51.0 bits (105), Expect(9) = 6e-048
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +1 / -2
Query: 100 RLLAVAVHLLPECRRRLHHAFQ 165
RLLAVAVHLLPECRRRL+H FQ
Sbjct: 1496179 RLLAVAVHLLPECRRRLYHPFQ 1496114
Score = 45.5 bits (93), Expect(7) = 2e-038
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3 / +1
Query: 570 MFSICIRTH*MKCSVTSLKSVIGL 499
+FS CIRTH*MKCSVTSL SV GL
Sbjct: 1494898 VFSKCIRTH*MKCSVTSL*SVTGL 1494969
Score = 45.1 bits (92), Expect(7) = 2e-038
Identities = 17/34 (50%), Positives = 25/34 (73%)
Frame = -3 / +2
Query: 675 GLDFKDVGVLDSLNPFENDTPIEELIRAGLPAFN 574
GLDF +VGV+ SL P E++ P+ E + AGLP ++
Sbjct: 1494668 GLDFTEVGVVISLKPLEDEDPMAEYVFAGLPIYS 1494769
Score = 44.1 bits (90), Expect(9) = 6e-048
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +2 / -2
Query: 170 RGASSTMPLTVKQVVDAQQSG 232
RGASSTMPLTVKQ+ +AQQSG
Sbjct: 1496017 RGASSTMPLTVKQISEAQQSG 1495955
Score = 42.3 bits (86), Expect(9) = 6e-048
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2 / -1
Query: 737 NEPANLESEHGVHVDEVLKRFKL 805
NE + ESEHGVH+DE++KRF+L
Sbjct: 1494155 NE*TDSESEHGVHIDEIVKRFRL 1494087
Score = 39.1 bits (79), Expect(9) = 6e-048
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / -3
Query: 830 AIDYNMDSGRLYSTIDEFHYKA 895
AIDY D G +YSTIDE HYK+
Sbjct: 1493952 AIDYLADIGHIYSTIDESHYKS 1493887
Score = 38.2 bits (77), Expect(9) = 6e-048
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / -2
Query: 583 WQSCTNQFFYGSVILKWIQ*IKHTDIFEIQ 672
W C N F +G +I +W+Q* H+D+ EIQ
Sbjct: 1494760 W*PCKNIFCHGILIFQWLQ*NDHSDLCEIQ 1494671
Score = 38.2 bits (77), Expect(9) = 6e-048
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2 / -2
Query: 221 QQSGTGDKGAPFIVNGVEMANI 286
Q TG+KGAPF+V+GVE AN+
Sbjct: 1495963 QSGITGEKGAPFVVDGVETANV 1495898
Score = 33.1 bits (66), Expect(7) = 2e-038
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3 / +3
Query: 282 LAISTPLTMNGAPLSPVPDCCAST 211
LA+STP T GAP SPV C ++
Sbjct: 1495902 LAVSTPSTTKGAPFSPVMPDCCAS 1495973
>gb|AU183932.1|AU183932 AU183932 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61525, mRNA sequence
Length = 446
Score = 122 bits (260), Expect(2) = 5e-047
Identities = 48/66 (72%), Positives = 57/66 (86%)
Frame = +2 / +2
Query: 221 QQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD 400
Q TG+KGAPF+V+GVE AN+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRWVND +D
Sbjct: 248 QSGITGEKGAPFVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGAD 427
Query: 401 SFETAA 418
S ETAA
Sbjct: 428 SAETAA 445
Score = 104 bits (222), Expect(2) = 1e-041
Identities = 40/45 (88%), Positives = 43/45 (95%)
Frame = -3 / -3
Query: 234 VPDCCASTTCFTVSGMVLDAPRILEGVVESAAAFWEEVNCDGEKS 100
+PDCCAS CFTVSGMVLDAPR+LEGVVESAAAFWEEVNCDGEK+
Sbjct: 258 MPDCCASEICFTVSGMVLDAPRLLEGVVESAAAFWEEVNCDGEKA 124
Score = 91.3 bits (193), Expect(2) = 5e-047
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +2 / +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG 232
FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG
Sbjct: 128 FSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSG 256
Score = 90.4 bits (191), Expect(2) = 1e-041
Identities = 40/57 (70%), Positives = 43/57 (75%)
Frame = -2 / -2
Query: 418 SSSFKRI*SIIHPSDEIEAAGAIVEREGHIGRPLHLGIDHPHKSNVSHLDAIDDERS 248
SS F RI +II PSDEIEAAGAIV+REGHIG PL L D HK NV LDA+DDE S
Sbjct: 445 SSGFSRISTIIDPSDEIEAAGAIVDREGHIGVPLRLATDQSHKPNVGCLDAVDDEGS 275
Score = 64.8 bits (135), Expect(2) = 3e-021
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = +3 / +3
Query: 282 TFDLWGWSMPRWSGRPM*PSRSTMAPAASISSDG*MM 392
T LW WS+ R SG PM PSRSTMAPAASISSDG MM
Sbjct: 309 TLGLWDWSVARRSGTPMCPSRSTMAPAASISSDGSMM 419
Score = 62.0 bits (129), Expect(2) = 3e-021
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +1 / +1
Query: 100 RLLAVAVHLLPECRRRLHHAFQDARRVQXXXXXXXXXXXXXXVWHGRQGRSVHRQWRR 273
RLLAVAVHLLPECRRRL+H FQ+ R++ +WH R R+ RR
Sbjct: 124 RLLAVAVHLLPECRRRLYHPFQEPGRIEHHAAHREADL*SAAIWHHRGEGRSLRRRRR 297
>dbj|AK073723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061H13, full
insert sequence
Length = 1322
Score = 147 bits (316), Expect(4) = 1e-045
Identities = 59/113 (52%), Positives = 83/113 (73%)
Frame = +2 / +3
Query: 227 SGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSF 406
S T D + F VNG+E++ +RLVG + K++R TDV+FTLDDGTGR+ RW ND++D+
Sbjct: 330 SQTNDDKSNFAVNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTK 509
Query: 407 ETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIE 565
E A IQNG Y+ V G LKG Q +++ A+S+R IT+FN+VT HF+ CV +H+E
Sbjct: 510 EMADIQNGDYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLE 668
Score = 36.8 bits (74), Expect(4) = 1e-045
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2 / +3
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
LP++ + I +D G LY+TID+ HYK+T
Sbjct: 915 LPEETVGKIIIDQVDLGHLYATIDDHHYKST 1007
Score = 36.3 bits (73), Expect(4) = 1e-045
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 704 TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
T++ VLN F++PA + +HGV VD V +R L
Sbjct: 816 TNMIDLVLNVFHDPAVMNDDHGVGVDYVSRRLNL 917
Score = 32.7 bits (65), Expect(4) = 1e-045
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2 / +3
Query: 164 KMRGASSTMPLTVKQVVDAQQS 229
K R A + +PLTVKQ++DA Q+
Sbjct: 273 KSRNAQALLPLTVKQIMDASQT 338
>ref|XM_466911.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1322
Score = 147 bits (316), Expect(4) = 1e-045
Identities = 59/113 (52%), Positives = 83/113 (73%)
Frame = +2 / +3
Query: 227 SGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSF 406
S T D + F VNG+E++ +RLVG + K++R TDV+FTLDDGTGR+ RW ND++D+
Sbjct: 330 SQTNDDKSNFAVNGMEVSTVRLVGRMLNKLDRVTDVSFTLDDGTGRVPVNRWENDSTDTK 509
Query: 407 ETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIE 565
E A IQNG Y+ V G LKG Q +++ A+S+R IT+FN+VT HF+ CV +H+E
Sbjct: 510 EMADIQNGDYVIVNGGLKGFQGKRQVVAYSVRRITNFNDVTHHFLHCVHVHLE 668
Score = 36.8 bits (74), Expect(4) = 1e-045
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2 / +3
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
LP++ + I +D G LY+TID+ HYK+T
Sbjct: 915 LPEETVGKIIIDQVDLGHLYATIDDHHYKST 1007
Score = 36.3 bits (73), Expect(4) = 1e-045
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 704 TDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
T++ VLN F++PA + +HGV VD V +R L
Sbjct: 816 TNMIDLVLNVFHDPAVMNDDHGVGVDYVSRRLNL 917
Score = 32.7 bits (65), Expect(4) = 1e-045
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2 / +3
Query: 164 KMRGASSTMPLTVKQVVDAQQS 229
K R A + +PLTVKQ++DA Q+
Sbjct: 273 KSRNAQALLPLTVKQIMDASQT 338
>dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091F07, full
insert sequence
Length = 1613
Score = 141 bits (303), Expect(3) = 2e-033
Identities = 62/184 (33%), Positives = 102/184 (55%)
Frame = +2 / +1
Query: 29 ICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQ 208
+ A AS F+ + + ++S + ++ + + G L + +
Sbjct: 70 MAAAASYFSGTALMPSQRSGAPAPEYSAAGTGAAAAPSPSKPRDPRFSGCVPATVLHISR 249
Query: 209 VVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVN 388
A + G F ++GVE N+R++G V + V R TDV FTLDD TG++ +RW+
Sbjct: 250 SFAAALAADGGGDPVFSIDGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKIPLVRWIT 429
Query: 389 DASDSFETAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIEN 568
D SD+ +T+ IQ G+Y+ V +L G Q +K+ A SIRPI +FNEV LHFI+C+ +H+E+
Sbjct: 430 DQSDTRDTSYIQEGVYVKVQVNLMGFQAKKQGLARSIRPINNFNEVVLHFIECMHVHLES 609
Query: 569 IELK 580
++ K
Sbjct: 610 VQSK 621
Score = 26.3 bits (51), Expect(3) = 2e-033
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2 / +3
Query: 761 EHGVHVDEVLKR 796
EHG HVDE+++R
Sbjct: 1215 EHGAHVDELVRR 1250
Score = 25.4 bits (49), Expect(3) = 2e-033
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2 / +3
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+PK I + + +G +Y TID+ H K+
Sbjct: 1257 MPKANIMGVVKHLAAAGFVYWTIDDNHVKS 1346
>gb|AU030219.1|AU030219 AU030219 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50776_2Z, mRNA sequence
Length = 651
Score = 71.2 bits (149), Expect(4) = 5e-025
Identities = 26/39 (66%), Positives = 34/39 (87%)
Frame = +2 / +1
Query: 689 SGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKL 805
+ S TDL+T+VLN F EPAN+ESEHGVH+DE++KRF+L
Sbjct: 190 TNGSKTDLNTEVLNVFREPANVESEHGVHIDEIVKRFRL 306
Score = 44.6 bits (91), Expect(4) = 5e-025
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2 / +1
Query: 806 LPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 304 LPEAKIKVAIDYLADIGHIYSTIDESHYKS 393
Score = 32.2 bits (64), Expect(4) = 5e-025
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1 / +3
Query: 610 YGSVILKWIQ*IKHTDIFEIQSSTGDQ 690
+G +I +W+Q* H+D+ EIQ T Q
Sbjct: 105 HGILIFQWLQ*NDHSDLXEIQPGTSAQ 185
Score = 26.3 bits (51), Expect(4) = 5e-025
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2 / +1
Query: 509 TDFNEVTLHFIQCVRMHIENIEL 577
TD+ QCVRMH+EN ++
Sbjct: 1 TDYMXSHCISFQCVRMHLENHQI 69
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,691,458,527
Number of Sequences: 438736
Number of extensions: 110928916
Number of successful extensions: 452667
Number of sequences better than 1.0e-020: 12
length of database: 933,473,305
effective HSP length: 61
effective length of database: 906,710,409
effective search space used: 329135878467
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)