TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131605.2.2
(713 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK099010.1| Oryza sativa (japonica cultivar-group) cDNA... 156 2e-038
gb|AU085982.1|AU085982 AU085982 Rice root Oryza sativa (jap... 156 2e-038
dbj|AK059582.1| Oryza sativa (japonica cultivar-group) cDNA... 156 2e-038
ref|XM_507607.1| PREDICTED Oryza sativa (japonica cultivar-... 156 2e-038
dbj|AK068626.1| Oryza sativa (japonica cultivar-group) cDNA... 156 2e-038
ref|XM_483765.1| Oryza sativa (japonica cultivar-group), mRNA 156 2e-038
ref|XM_507335.2| PREDICTED Oryza sativa (japonica cultivar-... 156 2e-038
gb|CF340370.1|CF340370 RCL1--07-N05.g1 Regenerated callus l... 156 2e-038
gb|AU094960.1|AU094960 AU094960 Rice panicle (between 3cm t... 156 7e-038
dbj|AK059234.1| Oryza sativa (japonica cultivar-group) cDNA... 154 9e-038
gb|D38974.1|D38974 RICR0038A Rice root Oryza sativa (japoni... 154 9e-038
gb|AU068820.1|AU068820 AU068820 Rice callus Oryza sativa (j... 154 9e-038
gb|AU094167.1|AU094167 AU094167 Rice panicle at flowering s... 156 3e-036
gb|CF323705.1|CF323705 HDN--04-I23.g1 OsHDAC1-overexpressin... 156 3e-036
gb|C27739.1|C27739 C27739 Rice callus cDNA Oryza sativa (ja... 151 6e-035
gb|AU092653.1|AU092653 AU092653 Rice callus Oryza sativa (j... 151 9e-035
dbj|AK058630.1| Oryza sativa (japonica cultivar-group) cDNA... 146 3e-034
gb|CV731316.1|CV731316 FLO--05-E20.b1 Rice flower lambda ph... 146 3e-034
gb|CV731317.1|CV731317 FLO--05-E20.g1 Rice flower lambda ph... 146 2e-033
gb|CV731463.1|CV731463 FLO--05-I04.g1 Rice flower lambda ph... 146 2e-033
gb|CV732475.1|CV732475 FLO--06-P12.g1 Rice flower lambda ph... 146 2e-033
gb|CV733158.1|CV733158 FLO--07-P04.g1 Rice flower lambda ph... 146 2e-033
gb|C26466.1|C26466 C26466 Rice callus cDNA Oryza sativa (ja... 140 3e-032
gb|AACV01018982.1| Oryza sativa (japonica cultivar-group) c... 82 9e-031
gb|D15113.1|D15113 RICC0083A Rice callus Oryza sativa (japo... 132 5e-030
gb|D22528.1|D22528 RICC0144A Rice callus Oryza sativa (japo... 135 6e-030
dbj|AP005524.3| Oryza sativa (japonica cultivar-group) geno... 82 7e-030
gb|CV732474.1|CV732474 FLO--06-P12.b1 Rice flower lambda ph... 111 9e-030
gb|CV731913.1|CV731913 FLO--06-C15.b1 Rice flower lambda ph... 111 9e-030
dbj|AP005546.3| Oryza sativa (japonica cultivar-group) geno... 82 2e-029
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 82 3e-028
gb|AC138196.3| Oryza sativa (japonica cultivar-group) chrom... 80 1e-026
gb|AACV01022359.1| Oryza sativa (japonica cultivar-group) c... 80 1e-026
gb|AC112209.4| Oryza sativa (japonica cultivar-group) chrom... 80 1e-026
gb|AU312176.1|AU312176 AU312176 Oryza sativa anther cDNA Or... 122 3e-026
ref|NT_107139.1| Oryza sativa (japonica cultivar-group) 80 9e-026
gb|AACV01020564.1| Oryza sativa (japonica cultivar-group) c... 82 2e-025
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-024
gb|AU064042.1|AU064042 AU064042 Rice panicle at flowering s... 107 6e-024
gb|CV731462.1|CV731462 FLO--05-I04.b1 Rice flower lambda ph... 111 1e-023
gb|AU062811.1|AU062811 AU062811 Rice callus Oryza sativa (j... 104 4e-022
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-022
>dbj|AK099010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120F23, full
insert sequence
Length = 629
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 201 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 380
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 381 SSQQIYTRATNT* 419
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 413 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 234
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 233 GGLVEQHRVV 204
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 98 PEEGQGPAAVV 130
>gb|AU085982.1|AU085982 AU085982 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0038, mRNA sequence
Length = 626
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 175 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 354
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 355 SSQQIYTRATNT* 393
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -3
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 387 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 208
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 207 GGLVEQHRVV 178
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 72 PEEGQGPAAVV 104
>dbj|AK059582.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B04, full
insert sequence
Length = 620
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 190 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 369
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 370 SSQQIYTRATNT* 408
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -3
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 402 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 223
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 222 GGLVEQHRVV 193
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 87 PEEGQGPAAVV 119
>ref|XM_507607.1| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.14 mRNA
Length = 620
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 190 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 369
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 370 SSQQIYTRATNT* 408
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -3
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 402 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 223
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 222 GGLVEQHRVV 193
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 87 PEEGQGPAAVV 119
>dbj|AK068626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154N05, full
insert sequence
Length = 619
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 191 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 370
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 371 SSQQIYTRATNT* 409
Score = 110 bits (235), Expect = 2e-022
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NR H CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 403 VGCPGVDLLA*VNRHHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 224
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 223 GGLVEQHRVV 194
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 88 PEEGQGPAAVV 120
>ref|XM_483765.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 619
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 191 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 370
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 371 SSQQIYTRATNT* 409
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 403 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 224
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 223 GGLVEQHRVV 194
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 88 PEEGQGPAAVV 120
>ref|XM_507335.2| PREDICTED Oryza sativa (japonica cultivar-group), P0562A06.14 mRNA
Length = 619
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 191 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 370
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 371 SSQQIYTRATNT* 409
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 403 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 224
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 223 GGLVEQHRVV 194
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 88 PEEGQGPAAVV 120
>gb|CF340370.1|CF340370 RCL1--07-N05.g1 Regenerated callus lambda phage cDNA library (RCL1)
Oryza sativa (japonica cultivar-group) cDNA clone
RCL1--07-N05, mRNA sequence
Length = 560
Score = 156 bits (335), Expect(2) = 2e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 191 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 370
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 371 SSQQIYTRATNT* 409
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -2
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 403 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 224
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 223 GGLVEQHRVV 194
Score = 27.2 bits (53), Expect(2) = 2e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 88 PEEGQGPAAVV 120
>gb|AU094960.1|AU094960 AU094960 Rice panicle (between 3cm to 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E41238, mRNA sequence
Length = 625
Score = 156 bits (335), Expect(2) = 7e-038
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 176 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 355
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 356 SSQQIYTRATNT* 394
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 388 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 209
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 208 GGLVEQHRVV 179
Score = 25.4 bits (49), Expect(2) = 7e-038
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 103 PEEGEGPAAI 132
PEEG+GPAA+
Sbjct: 73 PEEGQGPAAV 102
>dbj|AK059234.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-E11, full
insert sequence
Length = 510
Score = 154 bits (330), Expect(2) = 9e-038
Identities = 66/73 (90%), Positives = 71/73 (97%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRA+KDLM +GLIRMVSVH
Sbjct: 170 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMVSVH 349
Query: 386 SSQQIYTRATNT* 424
SQQIYTRATNT*
Sbjct: 350 CSQQIYTRATNT* 388
Score = 128 bits (274), Expect(2) = 4e-029
Identities = 54/75 (72%), Positives = 58/75 (77%)
Frame = -2 / -3
Query: 433 KHPSCVGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLG 254
K SCV CPGV LLA MNR HP +P HQIL PP QG INPEAL DG GDLLVLGHLG
Sbjct: 397 KTTSCVRCPGVNLLAAMNRHHPDKPPIHQILHSPPSQGPINPEALGEDGGGDLLVLGHLG 218
Query: 253 EQLIVGGLIEEHSVV 209
EQL+VGGL+E+H VV
Sbjct: 217 EQLVVGGLVEQHRVV 173
Score = 113 bits (241), Expect = 2e-023
Identities = 45/68 (66%), Positives = 56/68 (82%)
Frame = +1 / +1
Query: 220 ALRSGHLR*AALRGAQVQADHPIHPI*APQG*WILGTEGHQGSDGKGAHKDGLCSF*PAD 399
A+R GHLR AALRGAQVQADHP+ P+ APQ *W+ G EG++GSDG GA++DG+ S P D
Sbjct: 184 AVRPGHLRQAALRGAQVQADHPLRPLRAPQD*WVPG*EGYEGSDG*GAYQDGVGSLQPTD 363
Query: 400 IHQGNQHM 423
+HQGN+HM
Sbjct: 364 LHQGNEHM 387
Score = 27.2 bits (53), Expect(2) = 9e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 67 PEEGQGPAAVV 99
Score = 24.0 bits (46), Expect(2) = 4e-029
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1 / -2
Query: 152 RTWPAWTMAA 123
RTW AWT AA
Sbjct: 116 RTWRAWTTAA 87
>gb|D38974.1|D38974 RICR0038A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 416
Score = 154 bits (330), Expect(2) = 9e-038
Identities = 66/73 (90%), Positives = 70/73 (95%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 175 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 354
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATN *
Sbjct: 355 SSQQIYTRATNN* 393
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -3
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 387 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 208
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 207 GGLVEQHRVV 178
Score = 27.2 bits (53), Expect(2) = 9e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 72 PEEGQGPAAVV 104
>gb|AU068820.1|AU068820 AU068820 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50674_9A, mRNA sequence
Length = 405
Score = 154 bits (330), Expect(2) = 9e-038
Identities = 66/73 (90%), Positives = 71/73 (97%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRA+KDLM +GLIRMVSVH
Sbjct: 156 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMVSVH 335
Query: 386 SSQQIYTRATNT* 424
SQQIYTRATNT*
Sbjct: 336 CSQQIYTRATNT* 374
Score = 128 bits (274), Expect(2) = 4e-029
Identities = 54/75 (72%), Positives = 58/75 (77%)
Frame = -2 / -2
Query: 433 KHPSCVGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLG 254
K SCV CPGV LLA MNR HP +P HQIL PP QG INPEAL DG GDLLVLGHLG
Sbjct: 383 KTTSCVRCPGVNLLAAMNRHHPDKPPIHQILHSPPSQGPINPEALGEDGGGDLLVLGHLG 204
Query: 253 EQLIVGGLIEEHSVV 209
EQL+VGGL+E+H VV
Sbjct: 203 EQLVVGGLVEQHRVV 159
Score = 113 bits (241), Expect = 2e-023
Identities = 45/68 (66%), Positives = 56/68 (82%)
Frame = +1 / +2
Query: 220 ALRSGHLR*AALRGAQVQADHPIHPI*APQG*WILGTEGHQGSDGKGAHKDGLCSF*PAD 399
A+R GHLR AALRGAQVQADHP+ P+ APQ *W+ G EG++GSDG GA++DG+ S P D
Sbjct: 170 AVRPGHLRQAALRGAQVQADHPLRPLRAPQD*WVPG*EGYEGSDG*GAYQDGVGSLQPTD 349
Query: 400 IHQGNQHM 423
+HQGN+HM
Sbjct: 350 LHQGNEHM 373
Score = 27.2 bits (53), Expect(2) = 9e-038
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 53 PEEGQGPAAVV 85
Score = 24.0 bits (46), Expect(2) = 4e-029
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1 / -1
Query: 152 RTWPAWTMAA 123
RTW AWT AA
Sbjct: 102 RTWRAWTTAA 73
>gb|AU094167.1|AU094167 AU094167 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3524, mRNA sequence
Length = 611
Score = 156 bits (335), Expect = 3e-036
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 162 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 341
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 342 SSQQIYTRATNT* 380
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 374 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 195
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 194 GGLVEQHRVV 165
>gb|CF323705.1|CF323705 HDN--04-I23.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-I23, mRNA sequence
Length = 498
Score = 156 bits (335), Expect = 3e-036
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 88 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVH 267
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 268 SSQQIYTRATNT* 306
Score = 113 bits (242), Expect = 2e-023
Identities = 47/70 (67%), Positives = 56/70 (80%)
Frame = -2 / -1
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+LR +G GDLLVLGHLGEQL+V
Sbjct: 300 VGCPGVDLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESLRENGGGDLLVLGHLGEQLVV 121
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 120 GGLVEQHRVV 91
>gb|C27739.1|C27739 C27739 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52740_2A, mRNA sequence
Length = 398
Score = 151 bits (325), Expect = 6e-035
Identities = 66/73 (90%), Positives = 69/73 (94%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS LSERLR+NGSLARRAI DL +GLIRMVSVH
Sbjct: 25 VNNSVLFDQATYDKLLSEVPKYKQITPSXLSERLRINGSLARRAINDLXTRGLIRMVSVH 204
Query: 386 SSQQIYTRATNT* 424
SSQQIYTRATNT*
Sbjct: 205 SSQQIYTRATNT* 243
Score = 108 bits (231), Expect = 6e-022
Identities = 46/70 (65%), Positives = 54/70 (77%)
Frame = -2 / -3
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH C I+DGP QG ++PE+LR G GDLLVLGHLGEQL+V
Sbjct: 237 VGCPGVDLLA*VNRDHAD*APCX*IIDGPTSQGPVDPESLREXGGGDLLVLGHLGEQLVV 58
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 57 GGLVEQHRVV 28
>gb|AU092653.1|AU092653 AU092653 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52740, mRNA sequence
Length = 486
Score = 151 bits (324), Expect = 9e-035
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFDQATYDKLLSEVPKYKQITPS+LS RLR+NGSLARRAI DLM +GLIRMVSVH
Sbjct: 24 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSXRLRINGSLARRAINDLMTRGLIRMVSVH 203
Query: 386 SSQQIYTRATNT* 424
SSQQ YTRATNT*
Sbjct: 204 SSQQXYTRATNT* 242
Score = 112 bits (239), Expect = 5e-023
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = -2 / -2
Query: 418 VGCPGVYLLARMNRDHPYEPLCHQILDGPPCQGSINPEALR*DGWGDLLVLGHLGEQLIV 239
VGCPGV LLA +NRDH CH I+DGP QG ++PE+ R +G GDLLVLGHLGEQL+V
Sbjct: 236 VGCPGVXLLA*VNRDHAD*APCH*IIDGPTSQGPVDPESXRENGGGDLLVLGHLGEQLVV 57
Query: 238 GGLIEEHSVV 209
GGL+E+H VV
Sbjct: 56 GGLVEQHRVV 27
>dbj|AK058630.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C09, full
insert sequence
Length = 604
Score = 146 bits (314), Expect(2) = 3e-034
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 188 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 367
Query: 386 SSQQIYTRATNT*GV 430
SSQ IYTRATN *G+
Sbjct: 368 SSQLIYTRATNA*GI 412
Score = 22.6 bits (43), Expect(2) = 3e-034
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 88 EEGQGPAAVL 117
>gb|CV731316.1|CV731316 FLO--05-E20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-E20,
mRNA sequence
Length = 490
Score = 146 bits (314), Expect(2) = 3e-034
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 190 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 369
Query: 386 SSQQIYTRATNT*GV 430
SSQ IYTRATN *G+
Sbjct: 370 SSQLIYTRATNA*GI 414
Score = 22.6 bits (43), Expect(2) = 3e-034
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 90 EEGQGPAAVL 119
>gb|CV731317.1|CV731317 FLO--05-E20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-E20,
mRNA sequence
Length = 481
Score = 146 bits (314), Expect = 2e-033
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 453 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 274
Query: 386 SSQQIYTRATNT*GV 430
SSQ IYTRATN *G+
Sbjct: 273 SSQLIYTRATNA*GI 229
>gb|CV731463.1|CV731463 FLO--05-I04.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-I04,
mRNA sequence
Length = 534
Score = 146 bits (314), Expect = 2e-033
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2 / -3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 490 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 311
Query: 386 SSQQIYTRATNT*GV 430
SSQ IYTRATN *G+
Sbjct: 310 SSQLIYTRATNA*GI 266
>gb|CV732475.1|CV732475 FLO--06-P12.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-P12,
mRNA sequence
Length = 485
Score = 146 bits (314), Expect = 2e-033
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2 / -2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 457 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 278
Query: 386 SSQQIYTRATNT*GV 430
SSQ IYTRATN *G+
Sbjct: 277 SSQLIYTRATNA*GI 233
>gb|CV733158.1|CV733158 FLO--07-P04.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--07-P04,
mRNA sequence
Length = 494
Score = 146 bits (314), Expect = 2e-033
Identities = 62/75 (82%), Positives = 71/75 (94%)
Frame = +2 / -3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 456 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 277
Query: 386 SSQQIYTRATNT*GV 430
SSQ IYTRATN *G+
Sbjct: 276 SSQLIYTRATNA*GI 232
>gb|C26466.1|C26466 C26466 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C12376_1A, mRNA sequence
Length = 377
Score = 140 bits (300), Expect(2) = 3e-032
Identities = 60/75 (80%), Positives = 68/75 (90%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 142 VNNSVLFDKATYDKLLSEVPKYKQITPSXLSERLRINGSLARQAIKDLESRGAIRVVSVH 321
Query: 386 SSQQIYTRATNT*GV 430
SSQ IY RATN G+
Sbjct: 322 SSQLIYNRATNXLGI 366
Score = 22.6 bits (43), Expect(2) = 3e-032
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 42 EEGQGPAAVL 71
>gb|AACV01018982.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018982, whole
genome shotgun sequence
Length = 54373
Score = 82.2 bits (173), Expect(3) = 9e-031
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 7021 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 6914
Score = 81.7 bits (172), Expect(3) = 9e-031
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2 / -2
Query: 293 LSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT* 424
L+ L++NGSLARRAI DLM +GLIRMVSVHSSQQIYTRATNT*
Sbjct: 6102 LAISLQINGSLARRAINDLMTRGLIRMVSVHSSQQIYTRATNT* 5971
Score = 27.2 bits (53), Expect(3) = 9e-031
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / -1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 7210 PEEGQGPAAVV 7178
>gb|D15113.1|D15113 RICC0083A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0083A, mRNA sequence
Length = 335
Score = 132 bits (283), Expect(2) = 5e-030
Identities = 56/69 (81%), Positives = 64/69 (92%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQI PS+LSERLR+NGSLAR+AIKDL ++G IR+VSVH
Sbjct: 128 VNNSVLFDKATYDKLLSEVPKYKQIXPSVLSERLRINGSLARQAIKDLESRGAIRVVSVH 307
Query: 386 SSQQIYTRA 412
SSQ IY RA
Sbjct: 308 SSQLIYNRA 334
Score = 22.6 bits (43), Expect(2) = 5e-030
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 28 EEGQGPAAVL 57
>gb|D22528.1|D22528 RICC0144A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C0144_2A, mRNA sequence
Length = 409
Score = 135 bits (289), Expect = 6e-030
Identities = 57/75 (76%), Positives = 66/75 (88%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVH 385
VNN+VLFD+ATYDKLLSEVPKYKQITPS+L ERLR+NGSL R+AIKDL ++G R+VSVH
Sbjct: 176 VNNSVLFDKATYDKLLSEVPKYKQITPSVLXERLRINGSLXRQAIKDLESRGAXRVVSVH 355
Query: 386 SSQQIYTRATNT*GV 430
SSQ Y RATN *G+
Sbjct: 356 SSQLXYXRATNG*GI 400
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0562A06
Length = 154198
Score = 82.2 bits (173), Expect(3) = 7e-030
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 43635 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 43742
Score = 81.7 bits (172), Expect(3) = 7e-030
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2 / +1
Query: 293 LSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT* 424
L+ L++NGSLARRAI DLM +GLIRMVSVHSSQQIYTRATNT*
Sbjct: 44554 LAISLQINGSLARRAINDLMTRGLIRMVSVHSSQQIYTRATNT* 44685
Score = 27.2 bits (53), Expect(3) = 7e-030
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 43446 PEEGQGPAAVV 43478
>gb|CV732474.1|CV732474 FLO--06-P12.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-P12,
mRNA sequence
Length = 557
Score = 111 bits (236), Expect(3) = 9e-030
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIR 370
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR
Sbjct: 252 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIR 416
Score = 38.6 bits (78), Expect(3) = 9e-030
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2 / +1
Query: 371 MVSVHSSQQIYTRATNT*GV 430
+VSVHSSQ IYTRATN *G+
Sbjct: 418 VVSVHSSQLIYTRATNA*GI 477
Score = 22.6 bits (43), Expect(3) = 9e-030
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 152 EEGQGPAAVL 181
>gb|CV731913.1|CV731913 FLO--06-C15.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-C15,
mRNA sequence
Length = 540
Score = 111 bits (236), Expect(3) = 9e-030
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIR 370
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR
Sbjct: 240 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIR 404
Score = 38.6 bits (78), Expect(3) = 9e-030
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2 / +1
Query: 371 MVSVHSSQQIYTRATNT*GV 430
+VSVHSSQ IYTRATN *G+
Sbjct: 406 VVSVHSSQLIYTRATNA*GI 465
Score = 22.6 bits (43), Expect(3) = 9e-030
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +2
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 140 EEGQGPAAVL 169
>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1003_C09
Length = 124746
Score = 82.2 bits (173), Expect(3) = 2e-029
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 37857 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 37750
Score = 79.4 bits (167), Expect(3) = 2e-029
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +2 / -2
Query: 290 ILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT* 424
IL L++NGSLARRA+KDLM +GLIRMVSVH SQQIYTRATNT*
Sbjct: 37157 ILYIYLQINGSLARRAMKDLMDRGLIRMVSVHCSQQIYTRATNT* 37023
Score = 27.2 bits (53), Expect(3) = 2e-029
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / -1
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 38052 PEEGQGPAAVV 38020
>ref|NT_107078.1| Oryza sativa (japonica cultivar-group)
Length = 747721
Score = 82.2 bits (173), Expect(2) = 3e-028
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2 / -3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 532085 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 531978
Score = 79.4 bits (167), Expect(2) = 3e-028
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +2 / -1
Query: 290 ILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT* 424
IL L++NGSLARRA+KDLM +GLIRMVSVH SQQIYTRATNT*
Sbjct: 531385 ILYIYLQINGSLARRAMKDLMDRGLIRMVSVHCSQQIYTRATNT* 531251
>gb|AC138196.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0032M21 map C83B, complete sequence
Length = 48636
Score = 80.3 bits (169), Expect(2) = 1e-026
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 39789 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRV 39896
Score = 71.6 bits (150), Expect(2) = 1e-026
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / +3
Query: 308 RVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT*GV 430
++NGSLAR+AIKDL ++G IR+VSVHSSQ IYTRATN *G+
Sbjct: 45006 QINGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATNA*GI 45128
>gb|AACV01022359.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022359, whole
genome shotgun sequence
Length = 52987
Score = 80.3 bits (169), Expect(2) = 1e-026
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 41341 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRV 41234
Score = 71.6 bits (150), Expect(2) = 1e-026
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / -2
Query: 308 RVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT*GV 430
++NGSLAR+AIKDL ++G IR+VSVHSSQ IYTRATN *G+
Sbjct: 36120 QINGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATNA*GI 35998
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09
map C83B, complete sequence
Length = 123477
Score = 80.3 bits (169), Expect(3) = 1e-026
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 117012 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRV 116905
Score = 71.6 bits (150), Expect(3) = 1e-026
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / -1
Query: 308 RVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT*GV 430
++NGSLAR+AIKDL ++G IR+VSVHSSQ IYTRATN *G+
Sbjct: 111795 QINGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATNA*GI 111673
Score = 27.2 bits (53), Expect(3) = 1e-026
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 519 CCVECRIFLRLLYYFKIM 572
CCV+ ++FL LL +F ++
Sbjct: 72562 CCVKVQVFLCLLLFFSLL 72509
>gb|AU312176.1|AU312176 AU312176 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1597, mRNA sequence
Length = 390
Score = 122 bits (262), Expect = 3e-026
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = +2 / -2
Query: 251 LSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT* 424
LSEVPKYKQITPS+LSERLR+NGSLARRAI DLM +GLIRMVSVHSSQQIYTRATNT*
Sbjct: 377 LSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMVSVHSSQQIYTRATNT* 204
>ref|NT_107139.1| Oryza sativa (japonica cultivar-group)
Length = 380899
Score = 80.3 bits (169), Expect(2) = 9e-026
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 6466 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRV 6573
Score = 71.6 bits (150), Expect(2) = 9e-026
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / +1
Query: 308 RVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT*GV 430
++NGSLAR+AIKDL ++G IR+VSVHSSQ IYTRATN *G+
Sbjct: 11683 QINGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATNA*GI 11805
>gb|AACV01020564.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020564, whole
genome shotgun sequence
Length = 32136
Score = 82.2 bits (173), Expect(3) = 2e-025
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 17621 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 17728
Score = 62.0 bits (129), Expect(3) = 2e-025
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +2 / +3
Query: 290 ILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQI 400
IL L++NGSLARRA+KDLM +GLIRMVSVH SQQI
Sbjct: 18321 ILYIYLQINGSLARRAMKDLMDRGLIRMVSVHCSQQI 18431
Score = 27.2 bits (53), Expect(3) = 2e-025
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +2
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 17426 PEEGQGPAAVV 17458
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 80.3 bits (169), Expect(2) = 1e-024
Identities = 33/36 (91%), Positives = 36/36 (100%)
Frame = +2 / +3
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 2345118 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRV 2345225
Score = 71.6 bits (150), Expect(2) = 1e-024
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2 / +1
Query: 308 RVNGSLARRAIKDLMAKGLIRMVSVHSSQQIYTRATNT*GV 430
++NGSLAR+AIKDL ++G IR+VSVHSSQ IYTRATN *G+
Sbjct: 2350339 QINGSLARQAIKDLESRGAIRVVSVHSSQLIYTRATNA*GI 2350461
>gb|AU064042.1|AU064042 AU064042 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3524_1A, mRNA sequence
Length = 336
Score = 107 bits (228), Expect(2) = 6e-024
Identities = 46/54 (85%), Positives = 49/54 (90%)
Frame = +2 / +1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLI 367
VNN+VLFDQATYDKLLSEVPKYKQITPS LS RLR+NGSLARRAI LM +GLI
Sbjct: 175 VNNSVLFDQATYDKLLSEVPKYKQITPSXLSXRLRINGSLARRAINXLMTRGLI 336
Score = 27.2 bits (53), Expect(2) = 6e-024
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +3
Query: 103 PEEGEGPAAIV 135
PEEG+GPAA+V
Sbjct: 72 PEEGQGPAAVV 104
>gb|CV731462.1|CV731462 FLO--05-I04.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-I04,
mRNA sequence
Length = 353
Score = 111 bits (237), Expect(2) = 1e-023
Identities = 46/56 (82%), Positives = 54/56 (96%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKGLIRM 373
VNN+VLFD+ATYDKLLSEVPKYKQITPS+LSERLR+NGSLAR+AIKDL ++G IR+
Sbjct: 185 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRV 352
Score = 22.6 bits (43), Expect(2) = 1e-023
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1 / +1
Query: 106 EEGEGPAAIV 135
EEG+GPAA++
Sbjct: 85 EEGQGPAAVL 114
>gb|AU062811.1|AU062811 AU062811 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50560_1A, mRNA sequence
Length = 310
Score = 104 bits (222), Expect(2) = 4e-022
Identities = 44/52 (84%), Positives = 48/52 (92%)
Frame = +2 / +2
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRVNGSLARRAIKDLMAKG 361
VNN+VLFDQATYDKLLSEVPKYKQITPS LSERLR+NGSL RRA+K LM +G
Sbjct: 155 VNNSVLFDQATYDKLLSEVPKYKQITPSXLSERLRINGSLXRRAMKXLMDRG 310
Score = 23.5 bits (45), Expect(2) = 4e-022
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1 / +1
Query: 103 PEEGEGPAAIV 135
PEEG+G AA+V
Sbjct: 52 PEEGQGSAAVV 84
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 82.2 bits (173), Expect(2) = 5e-022
Identities = 34/36 (94%), Positives = 36/36 (100%)
Frame = +2 / -1
Query: 206 VNNAVLFDQATYDKLLSEVPKYKQITPSILSERLRV 313
VNN+VLFDQATYDKLLSEVPKYKQITPS+LSERLRV
Sbjct: 11830753 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRV 11830646
Score = 62.0 bits (129), Expect(2) = 5e-022
Identities = 28/37 (75%), Positives = 32/37 (86%)
Frame = +2 / -2
Query: 290 ILSERLRVNGSLARRAIKDLMAKGLIRMVSVHSSQQI 400
IL L++NGSLARRA+KDLM +GLIRMVSVH SQQI
Sbjct: 11830053 ILYIYLQINGSLARRAMKDLMDRGLIRMVSVHCSQQI 11829943
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 3,202,263,800
Number of Sequences: 438736
Number of extensions: 42821670
Number of successful extensions: 155582
Number of sequences better than 1.0e-020: 58
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 161550642818
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)