TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.3
(687 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (ja... 219 3e-055
gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (j... 219 3e-055
gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (j... 219 3e-055
gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda ph... 219 3e-055
dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA... 219 3e-055
gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing... 194 9e-051
gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda ph... 202 3e-050
gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing ... 192 4e-050
gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing ... 177 5e-049
gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing... 176 1e-048
gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (ja... 194 9e-048
gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) c... 92 2e-043
gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare imm... 175 4e-042
gb|AC104271.2| Oryza sativa (japonica cultivar-group) chrom... 92 1e-041
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 92 4e-039
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 92 4e-039
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 91 7e-037
dbj|AP004365.3| Oryza sativa (japonica cultivar-group) geno... 91 7e-037
gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) c... 91 8e-037
gb|CA756409.1|CA756409 BR030041000_PLATE_G11_87_087.ab1 OA ... 112 2e-034
ref|NM_189410.1| Oryza sativa (japonica cultivar-group), p... 119 4e-025
dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA... 114 9e-024
>gb|C27708.1|C27708 C27708 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C52661_1A, mRNA sequence
Length = 468
Score = 219 bits (472), Expect = 3e-055
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 161 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 340
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 341 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 436
Score = 183 bits (394), Expect = 2e-044
Identities = 78/92 (84%), Positives = 80/92 (86%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 435 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 256
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLF TLII TD GPVLN
Sbjct: 255 RPSNFLLFRQLISTWVLFFTLIIXTDSGPVLN 160
Score = 124 bits (266), Expect = 8e-027
Identities = 55/99 (55%), Positives = 71/99 (71%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 436 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 257
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLP 588
KQLLVV AID++LGVVL+ HH QR +FL L LP
Sbjct: 256 TTKQLLVVPAIDKHLGVVLHAHHQXGQRPRTEFLLLLLP 140
Score = 111 bits (237), Expect = 8e-023
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = -3 / +1
Query: 553 SVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGS 374
+V +DE EQHPG++QLP+QQE AW *SPL HG+ E GDVD G +DW Q+EGS
Sbjct: 175 AVRXDDEREEQHPGAYQLPEQQEVAWSCEGI*SPLQHGS*EC*GDVD*GTKDW*RQEEGS 354
Query: 373 ACEQG*IHQQDVPQGRLGHHRAEEPQV 293
+ EQG +H QDVP GHH A+EP++
Sbjct: 355 SSEQGQVH*QDVPTWGFGHHCAQEPEM 435
>gb|AU092630.1|AU092630 AU092630 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52661, mRNA sequence
Length = 671
Score = 219 bits (472), Expect = 3e-055
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 166 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 345
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 346 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 441
Score = 185 bits (398), Expect = 5e-045
Identities = 79/92 (85%), Positives = 81/92 (88%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 440 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 261
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLF TLIISTD GPVLN
Sbjct: 260 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 165
Score = 128 bits (275), Expect = 5e-028
Identities = 57/106 (53%), Positives = 75/106 (70%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 441 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 262
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILVRH 609
KQLLVV AID++LGVVL+ HH + QR +FL L LP +RH
Sbjct: 261 TTKQLLVVPAIDKHLGVVLHAHHQHGQRPRTEFLLLLLPLSGFLRH 124
Score = 111 bits (237), Expect = 8e-023
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = -3 / +3
Query: 553 SVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGS 374
+V +DE EQHPG++QLP+QQE AW *SPL HG+ E GDVD G +DW Q+EGS
Sbjct: 180 AVRADDEREEQHPGAYQLPEQQEVAWSCEGI*SPLQHGS*EC*GDVD*GTKDW*RQEEGS 359
Query: 373 ACEQG*IHQQDVPQGRLGHHRAEEPQV 293
+ EQG +H QDVP GHH A+EP++
Sbjct: 360 SSEQGQVH*QDVPTWGFGHHCAQEPEM 440
>gb|AU161115.1|AU161115 AU161115 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53504, mRNA sequence
Length = 660
Score = 219 bits (472), Expect = 3e-055
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 154 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 333
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 334 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 429
Score = 185 bits (398), Expect = 5e-045
Identities = 79/92 (85%), Positives = 81/92 (88%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 428 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 249
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLF TLIISTD GPVLN
Sbjct: 248 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 153
Score = 129 bits (277), Expect = 3e-028
Identities = 57/106 (53%), Positives = 75/106 (70%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 429 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWXLSPHLPNILKNHVAMAIKCPH 250
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILVRH 609
KQLLVV AID++LGVVL+ HH + QR +FL L LP +RH
Sbjct: 249 TTKQLLVVPAIDKHLGVVLHAHHQHGQRPRTEFLLLLLPLSGFLRH 112
Score = 111 bits (236), Expect = 1e-022
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = -3 / +3
Query: 553 SVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGS 374
+V +DE EQHPG++QLP+QQE AW *SPL HG+ E GDVD G +DW Q+EGS
Sbjct: 168 AVRADDEREEQHPGAYQLPEQQEVAWSCEGI*SPLQHGS*EC*GDVD*GXKDW*RQEEGS 347
Query: 373 ACEQG*IHQQDVPQGRLGHHRAEEPQV 293
+ EQG +H QDVP GHH A+EP++
Sbjct: 348 SSEQGQVH*QDVPTWGFGHHCAQEPEM 428
>gb|CV729204.1|CV729204 FLO--01-O20.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 500
Score = 219 bits (472), Expect = 3e-055
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = -1 / +1
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 163 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 342
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 343 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 438
Score = 185 bits (398), Expect = 5e-045
Identities = 79/92 (85%), Positives = 81/92 (88%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 437 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 258
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLF TLIISTD GPVLN
Sbjct: 257 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 162
Score = 128 bits (275), Expect = 5e-028
Identities = 57/106 (53%), Positives = 75/106 (70%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 438 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 259
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILVRH 609
KQLLVV AID++LGVVL+ HH + QR +FL L LP +RH
Sbjct: 258 TTKQLLVVPAIDKHLGVVLHAHHQHGQRPRTEFLLLLLPLSGFLRH 121
Score = 111 bits (237), Expect = 8e-023
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = -3 / +3
Query: 553 SVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGS 374
+V +DE EQHPG++QLP+QQE AW *SPL HG+ E GDVD G +DW Q+EGS
Sbjct: 177 AVRADDEREEQHPGAYQLPEQQEVAWSCEGI*SPLQHGS*EC*GDVD*GTKDW*RQEEGS 356
Query: 373 ACEQG*IHQQDVPQGRLGHHRAEEPQV 293
+ EQG +H QDVP GHH A+EP++
Sbjct: 357 SSEQGQVH*QDVPTWGFGHHCAQEPEM 437
>dbj|AK121220.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090H02, full
insert sequence
Length = 694
Score = 219 bits (472), Expect = 3e-055
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 162 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 341
Query: 387 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
KKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 342 KKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 437
Score = 185 bits (398), Expect = 5e-045
Identities = 79/92 (85%), Positives = 81/92 (88%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 436 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 257
Query: 473 RPSSFLLLRQLMRTWVLFLTLIISTDRGPVLN 568
RPS+FLL RQL+ TWVLF TLIISTD GPVLN
Sbjct: 256 RPSNFLLFRQLISTWVLFFTLIISTDSGPVLN 161
Score = 128 bits (275), Expect = 5e-028
Identities = 57/106 (53%), Positives = 75/106 (70%)
Frame = +1 / -3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 437 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 258
Query: 472 PAKQLLVVAAIDENLGVVLNTHH*Y*QRACAKFLFLFLPSLILVRH 609
KQLLVV AID++LGVVL+ HH + QR +FL L LP +RH
Sbjct: 257 TTKQLLVVPAIDKHLGVVLHAHHQHGQRPRTEFLLLLLPLSGFLRH 120
Score = 111 bits (237), Expect = 8e-023
Identities = 48/87 (55%), Positives = 61/87 (70%)
Frame = -3 / +2
Query: 553 SVSTNDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGS 374
+V +DE EQHPG++QLP+QQE AW *SPL HG+ E GDVD G +DW Q+EGS
Sbjct: 176 AVRADDEREEQHPGAYQLPEQQEVAWSCEGI*SPLQHGS*EC*GDVD*GTKDW*RQEEGS 355
Query: 373 ACEQG*IHQQDVPQGRLGHHRAEEPQV 293
+ EQG +H QDVP GHH A+EP++
Sbjct: 356 SSEQGQVH*QDVPTWGFGHHCAQEPEM 436
>gb|CF314982.1|CF314982 HD--03-L17.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 529
Score = 194 bits (418), Expect(2) = 9e-051
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = -1 / +3
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 162 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 341
Query: 387 KKKALPVNKDRFISKMFLRG 328
KKKALPVNKDRFISKMFLRG
Sbjct: 342 KKKALPVNKDRFISKMFLRG 401
Score = 159 bits (341), Expect(2) = 9e-041
Identities = 68/80 (85%), Positives = 70/80 (87%)
Frame = +2 / -1
Query: 329 PLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM 508
P RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A TRPS+FLL RQL+
Sbjct: 400 PRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLI 221
Query: 509 RTWVLFLTLIISTDRGPVLN 568
TWVLF TLIISTD GPVLN
Sbjct: 220 STWVLFFTLIISTDSGPVLN 161
Score = 111 bits (237), Expect(2) = 7e-024
Identities = 50/91 (54%), Positives = 65/91 (71%)
Frame = +1 / -3
Query: 337 EHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTNPAKQLLVVAAIDENL 516
EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK + KQLLVV AID++L
Sbjct: 392 EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPHTTKQLLVVPAIDKHL 213
Query: 517 GVVLNTHH*Y*QRACAKFLFLFLPSLILVRH 609
GVVL+ HH + QR +FL L LP +RH
Sbjct: 212 GVVLHAHHQHGQRPRTEFLLLLLPLSGFLRH 120
Score = 32.2 bits (64), Expect(2) = 9e-041
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2 / -3
Query: 293 HLGFLSTMMTESP 331
H GFLSTMMTESP
Sbjct: 437 HFGFLSTMMTESP 399
Score = 30.4 bits (60), Expect(2) = 9e-051
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +1
Query: 330 GDSVIIVLRNPK* 292
GDSVIIVLRNPK*
Sbjct: 400 GDSVIIVLRNPK* 438
Score = 23.1 bits (44), Expect(2) = 7e-024
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1 / -2
Query: 292 SLGVPQHDDDRV 327
S VP+H+DDR+
Sbjct: 438 SFRVPEHNDDRI 403
>gb|CV729205.1|CV729205 FLO--01-O20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--01-O20,
mRNA sequence
Length = 488
Score = 202 bits (436), Expect = 3e-050
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = -1 / -3
Query: 546 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPV 367
VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPV
Sbjct: 486 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPV 307
Query: 366 NKDRFISKMFLRGDSVIIVLRNPK* 292
NKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 306 NKDRFISKMFLRGDSVIIVLRNPK* 232
Score = 170 bits (366), Expect = 1e-040
Identities = 73/85 (85%), Positives = 75/85 (88%)
Frame = +2 / +2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 233 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 412
Query: 473 RPSSFLLLRQLMRTWVLFLTLIIST 547
RPS+FLL RQL+ TWVLF TLIIST
Sbjct: 413 RPSNFLLFRQLISTWVLFFTLIIST 487
Score = 114 bits (243), Expect = 1e-023
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = +1 / +1
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 232 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 411
Query: 472 PAKQLLVVAAIDENLGVVLNTHH 540
KQLLVV AID++LGVVL+ HH
Sbjct: 412 TTKQLLVVPAIDKHLGVVLHAHH 480
Score = 109 bits (233), Expect = 3e-022
Identities = 47/83 (56%), Positives = 59/83 (71%)
Frame = -3 / -2
Query: 541 NDEC*EQHPGSHQLPQQQEAAWPGSCF*SPL*HGARERAGDVDRGPQDWQGQKEGSACEQ 362
+DE EQHPG++QLP+QQE AW *SPL HG+ E GDVD G +DW Q+EGS+ EQ
Sbjct: 481 DDEREEQHPGAYQLPEQQEVAWSCEGI*SPLQHGS*EC*GDVD*GTKDW*RQEEGSSSEQ 302
Query: 361 G*IHQQDVPQGRLGHHRAEEPQV 293
G +H QDVP GHH A+EP++
Sbjct: 301 GQVH*QDVPTWGFGHHCAQEPEM 233
>gb|CF333220.1|CF333220 JMT--02-A13.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 530
Score = 192 bits (413), Expect(2) = 4e-050
Identities = 79/80 (98%), Positives = 80/80 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRN+KKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 164 FSTGPLSVLMMSVKNNTQVLINCRNSKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 343
Query: 387 KKKALPVNKDRFISKMFLRG 328
KKKALPVNKDRFISKMFLRG
Sbjct: 344 KKKALPVNKDRFISKMFLRG 403
Score = 159 bits (341), Expect(2) = 9e-041
Identities = 68/80 (85%), Positives = 70/80 (87%)
Frame = +2 / -3
Query: 329 PLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM 508
P RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A TRPS+FLL RQL+
Sbjct: 402 PRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLI 223
Query: 509 RTWVLFLTLIISTDRGPVLN 568
TWVLF TLIISTD GPVLN
Sbjct: 222 STWVLFFTLIISTDSGPVLN 163
Score = 107 bits (229), Expect(2) = 9e-023
Identities = 48/86 (55%), Positives = 62/86 (72%)
Frame = +1 / -2
Query: 337 EHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTNPAKQLLVVAAIDENL 516
EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK + KQLL V AID++L
Sbjct: 394 EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPHTTKQLLAVPAIDKHL 215
Query: 517 GVVLNTHH*Y*QRACAKFLFLFLPSL 594
GVVL+ HH + QR +FL L LP L
Sbjct: 214 GVVLHAHHQHGQRPRTEFLLLLLPLL 137
Score = 32.2 bits (64), Expect(2) = 9e-041
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESP 331
H GFLSTMMTESP
Sbjct: 439 HFGFLSTMMTESP 401
Score = 30.4 bits (60), Expect(2) = 4e-050
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +3
Query: 330 GDSVIIVLRNPK* 292
GDSVIIVLRNPK*
Sbjct: 402 GDSVIIVLRNPK* 440
Score = 23.1 bits (44), Expect(2) = 9e-023
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1 / -1
Query: 292 SLGVPQHDDDRV 327
S VP+H+DDR+
Sbjct: 440 SFRVPEHNDDRI 405
>gb|CF333221.1|CF333221 JMT--02-A13.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--02-A13, mRNA sequence
Length = 536
Score = 177 bits (381), Expect(2) = 5e-049
Identities = 73/79 (92%), Positives = 76/79 (96%)
Frame = -1 / -1
Query: 528 KNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFI 349
+ QVLINCRN+KKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALP+NKDRFI
Sbjct: 473 RTTPQVLINCRNSKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPLNKDRFI 294
Query: 348 SKMFLRGDSVIIVLRNPK* 292
SKMFLRGDSVIIVLRNPK*
Sbjct: 293 SKMFLRGDSVIIVLRNPK* 237
Score = 150 bits (322), Expect(2) = 3e-039
Identities = 64/79 (81%), Positives = 67/79 (84%)
Frame = +2 / +1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLF GRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 238 HFGFLSTMMTESPRRNILLMNLSLFNGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 417
Query: 473 RPSSFLLLRQLMRTWVLFL 529
RPS+FLL RQL+ TW + L
Sbjct: 418 RPSNFLLFRQLISTWGVVL 474
Score = 95.5 bits (202), Expect(2) = 2e-021
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +1 / +3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LV +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 237 SFRVPEHNDDRIPT*EHLANEPVLVQWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 416
Query: 472 PAKQLLVVAAIDENLG 519
KQLL V AID++LG
Sbjct: 417 TTKQLLAVPAIDKHLG 464
Score = 41.4 bits (84), Expect(2) = 5e-049
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / -3
Query: 567 FSTGPLSVLMMSVKNNT 517
FSTGPLSVLMMSVKNNT
Sbjct: 513 FSTGPLSVLMMSVKNNT 463
Score = 35.9 bits (72), Expect(2) = 3e-039
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2 / +2
Query: 518 VLFLTLIISTDRGPVLN 568
VLF TLIISTD GPVLN
Sbjct: 464 VLFFTLIISTDSGPVLN 514
Score = 30.9 bits (61), Expect(2) = 2e-021
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1 / +1
Query: 517 GVVLNTHH*Y*QRACAKFLFLFLP 588
GVVL+ HH + QR +FL L LP
Sbjct: 463 GVVLHAHHQHGQRPRTEFLLLLLP 534
>gb|CF314983.1|CF314983 HD--03-L17.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--03-L17, mRNA sequence
Length = 550
Score = 176 bits (379), Expect(2) = 1e-048
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1 / -3
Query: 510 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 331
LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 449 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 270
Query: 330 GDSVIIVLRNPK* 292
GDSVIIVLRNPK*
Sbjct: 269 GDSVIIVLRNPK* 231
Score = 145 bits (311), Expect(2) = 3e-039
Identities = 62/72 (86%), Positives = 64/72 (88%)
Frame = +2 / +1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 232 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 411
Query: 473 RPSSFLLLRQLM 508
RPS+FLL RQL+
Sbjct: 412 RPSNFLLFRQLI 447
Score = 97.3 bits (206), Expect(2) = 9e-023
Identities = 42/76 (55%), Positives = 55/76 (72%)
Frame = +1 / +3
Query: 292 SLGVPQHDDDRVAPEEHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTN 471
S VP+H+DDR+ EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK +
Sbjct: 231 SFRVPEHNDDRIPT*EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPH 410
Query: 472 PAKQLLVVAAIDENLG 519
KQLLVV AID+ G
Sbjct: 411 TTKQLLVVPAIDKPXG 458
Score = 41.4 bits (84), Expect(2) = 1e-048
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1 / -2
Query: 567 FSTGPLSVLMMSVKNNT 517
FSTGPLSVLMMSVKNNT
Sbjct: 507 FSTGPLSVLMMSVKNNT 457
Score = 40.9 bits (83), Expect(2) = 3e-039
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +2 / +2
Query: 515 WVLFLTLIISTDRGPVLN 568
WVLF TLIISTD GPVLN
Sbjct: 455 WVLFFTLIISTDSGPVLN 508
Score = 33.6 bits (67), Expect(2) = 9e-023
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1 / +1
Query: 517 GVVLNTHH*Y*QRACAKFLFLFLPSLILVRH 609
GVVL+ HH + QR +FL L LP +RH
Sbjct: 457 GVVLHAHHQHGQRPRTEFLLLLLPLSGFLRH 549
>gb|C27943.1|C27943 C27943 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53504_1A, mRNA sequence
Length = 458
Score = 194 bits (418), Expect = 9e-048
Identities = 80/80 (100%), Positives = 80/80 (100%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG
Sbjct: 149 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 328
Query: 387 KKKALPVNKDRFISKMFLRG 328
KKKALPVNKDRFISKMFLRG
Sbjct: 329 KKKALPVNKDRFISKMFLRG 388
Score = 159 bits (341), Expect = 4e-037
Identities = 68/80 (85%), Positives = 70/80 (87%)
Frame = +2 / -3
Query: 329 PLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLM 508
P RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A TRPS+FLL RQL+
Sbjct: 387 PRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLI 208
Query: 509 RTWVLFLTLIISTDRGPVLN 568
TWVLF TLIISTD GPVLN
Sbjct: 207 STWVLFFTLIISTDSGPVLN 148
Score = 108 bits (231), Expect = 6e-022
Identities = 48/84 (57%), Positives = 62/84 (73%)
Frame = +1 / -2
Query: 337 EHLADESILVHRQSLLFALASLGDLCPHLPHVLEHHVTVAIKSTNPAKQLLVVAAIDENL 516
EHLA+E +LVH +SLL A SL L PHLP++L++HV +AIK + KQLLVV AID++L
Sbjct: 379 EHLANEPVLVHWKSLLLAFTSLWYLSPHLPNILKNHVAMAIKCPHTTKQLLVVPAIDKHL 200
Query: 517 GVVLNTHH*Y*QRACAKFLFLFLP 588
GVVL+ HH + QR +FL L LP
Sbjct: 199 GVVLHAHHQHGQRPRTEFLLLLLP 128
>gb|AACV01011724.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011724, whole
genome shotgun sequence
Length = 16500
Score = 92.3 bits (195), Expect(3) = 2e-043
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = -1 / -1
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 14355 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 14236
Score = 92.3 bits (195), Expect(3) = 2e-043
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -1 / -2
Query: 534 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 14564 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 14436
Score = 86.8 bits (183), Expect(3) = 3e-033
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 14237 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 14353
Score = 65.7 bits (137), Expect(3) = 3e-033
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2 / +1
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 14437 TSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 14544
Score = 45.5 bits (93), Expect(3) = 2e-043
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -1 / -1
Query: 567 FSTGPLSVLMMSVKNNTQV 511
FSTGPLSVLMMSVKNNTQV
Sbjct: 16209 FSTGPLSVLMMSVKNNTQV 16153
Score = 43.2 bits (88), Expect(3) = 3e-033
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +2 / +2
Query: 512 TWVLFLTLIISTDRGPVLN 568
TWVLF TLIISTD GPVLN
Sbjct: 16154 TWVLFFTLIISTDSGPVLN 16210
>gb|AU058316.2|AU058316 AU058316 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50441_2Z, mRNA
sequence
Length = 453
Score = 175 bits (377), Expect = 4e-042
Identities = 73/74 (98%), Positives = 73/74 (98%)
Frame = -1 / +2
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 334
VLINCRNNK LLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL
Sbjct: 2 VLINCRNNKXLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 181
Query: 333 RGDSVIIVLRNPK* 292
RGDSVIIVLRNPK*
Sbjct: 182 RGDSVIIVLRNPK* 223
Score = 146 bits (314), Expect = 2e-033
Identities = 63/74 (85%), Positives = 64/74 (86%)
Frame = +2 / -1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSSTMLQWRSKART 472
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS TMLQWRS A T
Sbjct: 222 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQWRSNALT 43
Query: 473 RPSSFLLLRQLMRT 514
RPS FLL RQL+ T
Sbjct: 42 RPSXFLLFRQLIST 1
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
complete sequence
Length = 117724
Score = 92.3 bits (195), Expect(3) = 1e-041
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = -1 / -1
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 45391 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 45272
Score = 92.3 bits (195), Expect(3) = 1e-041
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -1 / -2
Query: 534 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 45600 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 45472
Score = 86.8 bits (183), Expect(3) = 2e-031
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 45273 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 45389
Score = 65.7 bits (137), Expect(3) = 2e-031
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2 / +2
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 45473 TSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 45580
Score = 45.5 bits (93), Expect(3) = 1e-041
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -1 / -1
Query: 567 FSTGPLSVLMMSVKNNTQV 511
FSTGPLSVLMMSVKNNTQV
Sbjct: 47245 FSTGPLSVLMMSVKNNTQV 47189
Score = 43.2 bits (88), Expect(3) = 2e-031
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +2 / +3
Query: 512 TWVLFLTLIISTDRGPVLN 568
TWVLF TLIISTD GPVLN
Sbjct: 47190 TWVLFFTLIISTDSGPVLN 47246
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 92.3 bits (195), Expect(3) = 4e-039
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = -1 / -3
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1849760 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 1849641
Score = 92.3 bits (195), Expect(3) = 4e-039
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -1 / -1
Query: 534 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 1849969 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 1849841
Score = 86.8 bits (183), Expect(2) = 3e-029
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 1849642 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 1849758
Score = 65.7 bits (137), Expect(2) = 3e-029
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2 / +3
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 1849842 TSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 1849949
Score = 45.5 bits (93), Expect(3) = 4e-039
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -1 / -3
Query: 567 FSTGPLSVLMMSVKNNTQV 511
FSTGPLSVLMMSVKNNTQV
Sbjct: 1851614 FSTGPLSVLMMSVKNNTQV 1851558
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 92.3 bits (195), Expect(3) = 4e-039
Identities = 39/40 (97%), Positives = 40/40 (100%)
Frame = -1 / -1
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 1820693 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 1820574
Score = 92.3 bits (195), Expect(3) = 4e-039
Identities = 37/43 (86%), Positives = 40/43 (93%)
Frame = -1 / -2
Query: 534 SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
S+ ++ VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 1820902 SIYSSF*VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 1820774
Score = 86.8 bits (183), Expect(2) = 3e-029
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 1820575 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 1820691
Score = 65.7 bits (137), Expect(2) = 3e-029
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = +2 / +3
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQWRS A TRPS+FLL RQL+ T
Sbjct: 1820775 TSVHISLTFSRTMLQWRSNALTRPSNFLLFRQLIST 1820882
Score = 45.5 bits (93), Expect(3) = 4e-039
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -1 / -1
Query: 567 FSTGPLSVLMMSVKNNTQV 511
FSTGPLSVLMMSVKNNTQV
Sbjct: 1822547 FSTGPLSVLMMSVKNNTQV 1822491
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 90.9 bits (192), Expect(2) = 7e-037
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = -1 / -3
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 2340297 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 2340178
Score = 87.2 bits (184), Expect(2) = 7e-037
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = -1 / -1
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTEV
Sbjct: 2340491 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 2340384
Score = 86.8 bits (183), Expect(2) = 3e-027
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 2340179 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 2340295
Score = 58.8 bits (122), Expect(2) = 3e-027
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +2 / +1
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQW S A TRPS+FLL QL+ T
Sbjct: 2340385 TSVHISLTFSRTMLQWLSNALTRPSNFLLFWQLIST 2340492
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0458E05
Length = 193577
Score = 90.9 bits (192), Expect(2) = 7e-037
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = -1 / -1
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 152216 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 152097
Score = 87.2 bits (184), Expect(2) = 7e-037
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = -1 / -2
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTEV
Sbjct: 152410 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 152303
Score = 86.8 bits (183), Expect(2) = 4e-027
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +1
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 152098 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 152214
Score = 58.8 bits (122), Expect(2) = 4e-027
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +2 / +3
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQW S A TRPS+FLL QL+ T
Sbjct: 152304 TSVHISLTFSRTMLQWLSNALTRPSNFLLFWQLIST 152411
>gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003094, whole
genome shotgun sequence
Length = 61898
Score = 90.9 bits (192), Expect(2) = 8e-037
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = -1 / -2
Query: 411 EVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
+VPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 45865 QVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 45746
Score = 87.2 bits (184), Expect(2) = 8e-037
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = -1 / -3
Query: 513 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 406
VLINC+NNKKLLGRVRAFD HCNMVLENVREMWTEV
Sbjct: 46059 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 45952
Score = 86.8 bits (183), Expect(2) = 4e-027
Identities = 36/39 (92%), Positives = 36/39 (92%)
Frame = +2 / +3
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGT 409
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GT
Sbjct: 45747 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGT 45863
Score = 58.8 bits (122), Expect(2) = 4e-027
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = +2 / +2
Query: 407 TSVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRT 514
TSVHIS TFS TMLQW S A TRPS+FLL QL+ T
Sbjct: 45953 TSVHISLTFSRTMLQWLSNALTRPSNFLLFWQLIST 46060
>gb|CA756409.1|CA756409 BR030041000_PLATE_G11_87_087.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030041000_PLATE_G11_87_087.ab1 similar to small
nuclear ribonucleoprotein D2-like protein [Chlamys, mRNA
sequence
Length = 627
Score = 112 bits (239), Expect(2) = 2e-034
Identities = 45/64 (70%), Positives = 52/64 (81%)
Frame = -1 / +2
Query: 567 FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 388
F TGPLS+L +VKNNTQVLI CRNN+KLL RV+AFDRHCNMVLE+V E+W E PK+ K
Sbjct: 119 FRTGPLSLLTDAVKNNTQVLIACRNNRKLLARVKAFDRHCNMVLEDVTELWQETPKSSKA 298
Query: 387 KKKA 376
K A
Sbjct: 299 KAAA 310
Score = 57.4 bits (119), Expect(2) = 2e-034
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -1 / +2
Query: 378 ALPVNKDRFISKMFLRGDSVIIVLRNPK 295
A PVNKDR+IS MFLRGDSVI+VL+NPK
Sbjct: 350 AKPVNKDRYISXMFLRGDSVILVLKNPK 433
>ref|NM_189410.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 153
Score = 119 bits (254), Expect = 4e-025
Identities = 50/51 (98%), Positives = 51/51 (100%)
Frame = -1 / +1
Query: 444 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL+NPK*
Sbjct: 1 MVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLKNPK* 153
Score = 105 bits (224), Expect = 5e-021
Identities = 45/50 (90%), Positives = 45/50 (90%)
Frame = +2 / -2
Query: 293 HLGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGTSVHISRTFSST 442
H GFLSTMMTESP RNILLMNLSLFTGRAFFLPLPV GTSVHIS TFS T
Sbjct: 152 HFGFLSTMMTESPRRNILLMNLSLFTGRAFFLPLPVFGTSVHISLTFSRT 3
>dbj|AK105062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B09, full
insert sequence
Length = 360
Score = 114 bits (244), Expect = 9e-024
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = -1 / +2
Query: 435 ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 292
ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*
Sbjct: 2 ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK* 145
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,519,999,698
Number of Sequences: 438736
Number of extensions: 67161292
Number of successful extensions: 320709
Number of sequences better than 1.0e-020: 31
length of database: 933,473,305
effective HSP length: 59
effective length of database: 907,587,881
effective search space used: 153382351889
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)