TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG954988.1|CG954988 MBEMP69TR mth2 Medicago truncatula g... 135 3e-039
gb|CG973927.1|CG973927 MBEMP53TF mth2 Medicago truncatula g... 135 2e-035
gb|CG930935.1|CG930935 MBELI83TR mth2 Medicago truncatula g... 135 2e-035
gb|CG961547.1|CG961547 MBEIS70TF mth2 Medicago truncatula g... 133 3e-030
gb|AC139842.16| Medicago truncatula clone mth2-6b10, WORKIN... 133 3e-030
gb|CG966126.1|CG966126 MBEGT01TR mth2 Medicago truncatula g... 132 5e-030
gb|AL389835.1|AL389835 MtBC57G04F1 MtBC Medicago truncatula... 129 5e-029
gb|AC149269.11| Medicago truncatula clone mth2-102b19, comp... 106 4e-022
emb|CR505375.1| mth4-39I18FM1 BAC end, cultivar Jemalong A1... 105 5e-022
>gb|CG954988.1|CG954988 MBEMP69TR mth2 Medicago truncatula genomic clone 3L18, DNA sequence
Length = 943
Score = 135 bits (289), Expect(2) = 3e-039
Identities = 54/97 (55%), Positives = 68/97 (70%)
Frame = +2 / -3
Query: 2 IHPINNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAV 181
I+ +NN SC+P E+GLL+ +TVFDV FN LVGPLP + G +E+L+VAHN SG +
Sbjct: 383 INFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFSGKI 204
Query: 182 PEAICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
P +IC LP LKN T S NFFTGEPP+C + SD R
Sbjct: 203 PSSICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRR 93
Score = 47.8 bits (98), Expect(2) = 3e-039
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +2 / -3
Query: 272 VPSDGDRRNCLPNRPTQRTPQQCAAFYSQP 361
+P+ DRRNCLP RP Q+T +CA+F S+P
Sbjct: 116 LPASDDRRNCLPARPFQKTLVECASFLSKP 27
>gb|CG973927.1|CG973927 MBEMP53TF mth2 Medicago truncatula genomic clone 3J10, DNA sequence
Length = 891
Score = 135 bits (289), Expect(2) = 2e-035
Identities = 54/97 (55%), Positives = 68/97 (70%)
Frame = +2 / +2
Query: 2 IHPINNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAV 181
I+ +NN SC+P E+GLL+ +TVFDV FN LVGPLP + G +E+L+VAHN SG +
Sbjct: 560 INFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFSGKI 739
Query: 182 PEAICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
P +IC LP LKN T S NFFTGEPP+C + SD R
Sbjct: 740 PSSICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRR 850
Score = 35.0 bits (70), Expect(2) = 2e-035
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2 / +2
Query: 272 VPSDGDRRNCLPNRPTQRT 328
+P+ DRRNCLP RP Q+T
Sbjct: 827 LPASDDRRNCLPARPFQKT 883
>gb|CG930935.1|CG930935 MBELI83TR mth2 Medicago truncatula genomic clone 80M21, DNA
sequence
Length = 885
Score = 135 bits (289), Expect(2) = 2e-035
Identities = 54/97 (55%), Positives = 68/97 (70%)
Frame = +2 / +3
Query: 2 IHPINNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAV 181
I+ +NN SC+P E+GLL+ +TVFDV FN LVGPLP + G +E+L+VAHN SG +
Sbjct: 555 INFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFSGKI 734
Query: 182 PEAICALPRLKNLTISYNFFTGEPPSCARVVPSDGDR 292
P +IC LP LKN T S NFFTGEPP+C + SD R
Sbjct: 735 PSSICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRR 845
Score = 35.0 bits (70), Expect(2) = 2e-035
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2 / +3
Query: 272 VPSDGDRRNCLPNRPTQRT 328
+P+ DRRNCLP RP Q+T
Sbjct: 822 LPASDDRRNCLPARPFQKT 878
>gb|CG961547.1|CG961547 MBEIS70TF mth2 Medicago truncatula genomic clone 64L19, DNA
sequence
Length = 891
Score = 133 bits (285), Expect = 3e-030
Identities = 52/91 (57%), Positives = 66/91 (72%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNG +C+P EVGLL+ +TVFDVSFN +GPLP++ +E L+VAHN LSG +P +
Sbjct: 569 MNNGFQACLPEEVGLLKNLTVFDVSFNKFLGPLPEKYGNAVGLEVLNVAHNYLSGQIPAS 748
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSD 283
ICALP L N T SYNFFTGEPP C + +D
Sbjct: 749 ICALPNLVNFTYSYNFFTGEPPQCLVLPAAD 841
>gb|AC139842.16| Medicago truncatula clone mth2-6b10, WORKING DRAFT SEQUENCE, 4
unordered pieces
Length = 151398
Score = 133 bits (285), Expect = 3e-030
Identities = 52/91 (57%), Positives = 66/91 (72%)
Frame = +2 / +2
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NNG +C+P EVGLL+ +TVFDVSFN +GPLP++ +E L+VAHN LSG +P +
Sbjct: 40646 MNNGFQACLPEEVGLLKNLTVFDVSFNKFLGPLPEKYGNAVGLEVLNVAHNYLSGQIPAS 40825
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARVVPSD 283
ICALP L N T SYNFFTGEPP C + +D
Sbjct: 40826 ICALPNLVNFTYSYNFFTGEPPQCLVLPAAD 40918
>gb|CG966126.1|CG966126 MBEGT01TR mth2 Medicago truncatula genomic clone 52B2, DNA sequence
Length = 822
Score = 132 bits (283), Expect = 5e-030
Identities = 51/87 (58%), Positives = 64/87 (73%)
Frame = +2 / +3
Query: 2 IHPINNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAV 181
I+ +NN SC+P E+GLL+ +TVFDV FN LVGPLP + G +E+L+VAHN SG +
Sbjct: 555 INFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFSGKI 734
Query: 182 PEAICALPRLKNLTISYNFFTGEPPSC 262
P +IC LP LKN T S NFFTGEPP+C
Sbjct: 735 PSSICMLPNLKNFTFSDNFFTGEPPAC 815
>gb|AL389835.1|AL389835 MtBC57G04F1 MtBC Medicago truncatula cDNA clone MtBC57G04 T3, mRNA
sequence
Length = 396
Score = 129 bits (276), Expect = 5e-029
Identities = 48/90 (53%), Positives = 67/90 (74%)
Frame = +2 / +3
Query: 14 NNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEAI 193
N+ + C+P ++G L +VTVFDVSFN VG LP+ ++GM+ +EQL+VAHN+ SG +PE+I
Sbjct: 123 NSRMKGCLPNDIGKLDKVTVFDVSFNEFVGELPESISGMKSLEQLNVAHNKFSGVIPESI 302
Query: 194 CALPRLKNLTISYNFFTGEPPSCARVVPSD 283
C LPRL+NLT SYN+F+GE C + D
Sbjct: 303 CRLPRLENLTYSYNYFSGESKICVNLDDKD 392
>gb|AC149269.11| Medicago truncatula clone mth2-102b19, complete sequence
Length = 128294
Score = 106 bits (226), Expect = 4e-022
Identities = 41/87 (47%), Positives = 62/87 (71%)
Frame = +2 / -3
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VGL E+ V DVSFNSL+G LP ++ ++ +E L++AHN+LSG + +
Sbjct: 43803 LNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDI 43624
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC+L L NLT++YNFF+G C+++
Sbjct: 43623 ICSLRSLANLTVAYNFFSGFSQQCSKL 43543
>emb|CR505375.1| mth4-39I18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 435
Score = 105 bits (225), Expect = 5e-022
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = +2 / +1
Query: 11 INNGLDSCVPPEVGLLREVTVFDVSFNSLVGPLPQQVAGMRKVEQLDVAHNRLSGAVPEA 190
+NN L C+P VG+ EV V DVSFNSLVG LP ++ ++ +E L++AHN LSG + +
Sbjct: 43 LNNQLTGCIPQGVGIFTEVQVLDVSFNSLVGHLPDTISCLQDIEVLNLAHNNLSGDISDV 222
Query: 191 ICALPRLKNLTISYNFFTGEPPSCARV 271
IC+L L NLT++ NFF+G C+R+
Sbjct: 223 ICSLRSLLNLTVTSNFFSGFSQECSRL 303
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 360,730,502
Number of Sequences: 392609
Number of extensions: 3673194
Number of successful extensions: 28236
Number of sequences better than 1.0e-020: 10
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20166951200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)