TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS16e03.yg.2.1
(608 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC147538.16| Medicago truncatula clone mth2-135c7, WORKI... 160 5e-057
gb|AC147538.15| Medicago truncatula clone mth2-135c7, WORKI... 160 5e-057
gb|AW686764.1|AW686764 NF042E06NR1F1000 Nodulated root Medi... 154 4e-049
emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1... 135 2e-044
gb|AC160840.20| Medicago truncatula clone mth2-27o21, WORKI... 135 2e-044
emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2... 135 2e-044
gb|AC174287.2| Medicago truncatula clone mth2-32a8, WORKING... 135 2e-044
gb|AL375990.1|AL375990 MtBB20E07F1 MtBB Medicago truncatula... 148 1e-042
gb|BI266143.1|BI266143 NF086E04IN1F1035 Insect herbivory Me... 135 1e-039
gb|AC142094.12| Medicago truncatula clone mth2-34h6, comple... 123 7e-038
gb|AC144931.28| Medicago truncatula clone mth2-22b18, compl... 123 7e-038
gb|AC141922.19| Medicago truncatula clone mth2-9n11, comple... 123 7e-038
gb|AC170800.5| Medicago truncatula clone mth2-32n7, complet... 123 7e-038
gb|CX534453.1|CX534453 s13dNF76B04MJ029_328507 Methyl Jasmo... 101 1e-028
gb|CX532373.1|CX532373 s13dNF61A03MJ017_271039 Methyl Jasmo... 70 5e-025
>gb|AC147538.16| Medicago truncatula clone mth2-135c7, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 133436
Score = 160 bits (343), Expect(4) = 5e-057
Identities = 66/94 (70%), Positives = 79/94 (84%)
Frame = -2 / -1
Query: 361 ASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRG 182
++D ISLI+SVEDTG GIP ++Q +FTPFMQVGPSI+R HGGTGIGLSISKCLVGLM G
Sbjct: 60098 SNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNG 59919
Query: 181 EIGFASKPQVGSTFTFTAVLTRAHSSRNENKSSE 80
EIGF S+P++GSTFTFTAV T A + NE K+ +
Sbjct: 59918 EIGFVSEPKIGSTFTFTAVFTNACPNSNELKTQQ 59817
Score = 127 bits (272), Expect(3) = 2e-034
Identities = 58/89 (65%), Positives = 62/89 (69%)
Frame = +3 / +1
Query: 90 LFSFLLEWALVRTAVKVKVEPTWGLLANPISPLMSPTKHLLMLNPMPVPPWMRAMDGPTC 269
L SF L ALV TAV VKV P +G L NPISP M PTKHLLML P+PVPP MDGPTC
Sbjct: 59827 LSSFELGHALVNTAVNVKVLPIFGSLTNPISPFMRPTKHLLMLRPIPVPPCFLEMDGPTC 60006
Query: 270 MKGVKTRD*ASNGIPTPVSSTDIIKLIES 356
M GV S GIP+PVSSTD IKL+ S
Sbjct: 60007 MNGVNIIGCDSRGIPSPVSSTDTIKLMRS 60093
Score = 46.0 bits (94), Expect(4) = 5e-057
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -2 / -1
Query: 484 TGTQSANTLSGYPVANRKRSWENFRVFSRE 395
T + +TLSG+PVA+ +RSWE FR FS E
Sbjct: 60218 TSKDAEHTLSGFPVADGRRSWEGFRAFSHE 60129
Score = 40.9 bits (83), Expect(4) = 5e-057
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -2 / -1
Query: 88 SSEFKGINALVVDHRPVRAKVTRY 17
+SEF G+ ALV+D RPVRA+V+RY
Sbjct: 59792 TSEFNGMAALVIDPRPVRAEVSRY 59721
Score = 35.0 bits (70), Expect(3) = 2e-034
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3 / +1
Query: 18 YLVTLARTGL*STTNALIPLNSD 86
YL T ARTGL S T+A IPLNS+
Sbjct: 59722 YLDTSARTGLGSITSAAIPLNSE 59790
Score = 32.2 bits (64), Expect(4) = 5e-057
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2 / -1
Query: 553 TEXXHIYXTVHVVEEIMXXLEXETGTQS 470
T+ HI+ T+H+VEE+ +E E + S
Sbjct: 60296 TDKGHIFVTIHLVEEVFHSIEVERESTS 60213
Score = 22.6 bits (43), Expect(3) = 2e-034
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1 / +2
Query: 403 *RLESFPNCAFCSPLGSHLRY 465
*RL P+C LG+HL Y
Sbjct: 60137 *RL*ILPSCGDHQQLGNHLMY 60199
>gb|AC147538.15| Medicago truncatula clone mth2-135c7, WORKING DRAFT SEQUENCE, 5 ordered
pieces
Length = 133186
Score = 160 bits (343), Expect(4) = 5e-057
Identities = 66/94 (70%), Positives = 79/94 (84%)
Frame = -2 / -2
Query: 361 ASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRG 182
++D ISLI+SVEDTG GIP ++Q +FTPFMQVGPSI+R HGGTGIGLSISKCLVGLM G
Sbjct: 60366 SNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNG 60187
Query: 181 EIGFASKPQVGSTFTFTAVLTRAHSSRNENKSSE 80
EIGF S+P++GSTFTFTAV T A + NE K+ +
Sbjct: 60186 EIGFVSEPKIGSTFTFTAVFTNACPNSNELKTQQ 60085
Score = 127 bits (272), Expect(3) = 2e-034
Identities = 58/89 (65%), Positives = 62/89 (69%)
Frame = +3 / +2
Query: 90 LFSFLLEWALVRTAVKVKVEPTWGLLANPISPLMSPTKHLLMLNPMPVPPWMRAMDGPTC 269
L SF L ALV TAV VKV P +G L NPISP M PTKHLLML P+PVPP MDGPTC
Sbjct: 60095 LSSFELGHALVNTAVNVKVLPIFGSLTNPISPFMRPTKHLLMLRPIPVPPCFLEMDGPTC 60274
Query: 270 MKGVKTRD*ASNGIPTPVSSTDIIKLIES 356
M GV S GIP+PVSSTD IKL+ S
Sbjct: 60275 MNGVNIIGCDSRGIPSPVSSTDTIKLMRS 60361
Score = 46.0 bits (94), Expect(4) = 5e-057
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -2 / -2
Query: 484 TGTQSANTLSGYPVANRKRSWENFRVFSRE 395
T + +TLSG+PVA+ +RSWE FR FS E
Sbjct: 60486 TSKDAEHTLSGFPVADGRRSWEGFRAFSHE 60397
Score = 40.9 bits (83), Expect(4) = 5e-057
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = -2 / -2
Query: 88 SSEFKGINALVVDHRPVRAKVTRY 17
+SEF G+ ALV+D RPVRA+V+RY
Sbjct: 60060 TSEFNGMAALVIDPRPVRAEVSRY 59989
Score = 35.0 bits (70), Expect(3) = 2e-034
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3 / +2
Query: 18 YLVTLARTGL*STTNALIPLNSD 86
YL T ARTGL S T+A IPLNS+
Sbjct: 59990 YLDTSARTGLGSITSAAIPLNSE 60058
Score = 32.2 bits (64), Expect(4) = 5e-057
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2 / -2
Query: 553 TEXXHIYXTVHVVEEIMXXLEXETGTQS 470
T+ HI+ T+H+VEE+ +E E + S
Sbjct: 60564 TDKGHIFVTIHLVEEVFHSIEVERESTS 60481
Score = 22.6 bits (43), Expect(3) = 2e-034
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1 / +3
Query: 403 *RLESFPNCAFCSPLGSHLRY 465
*RL P+C LG+HL Y
Sbjct: 60405 *RL*ILPSCGDHQQLGNHLMY 60467
>gb|AW686764.1|AW686764 NF042E06NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF042E06NR 5', mRNA sequence
Length = 652
Score = 154 bits (331), Expect(3) = 4e-049
Identities = 63/83 (75%), Positives = 73/83 (87%)
Frame = -2 / +2
Query: 361 ASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRG 182
++D ISLI+SVEDTG GIP ++Q +FTPFMQVGPSI+R HGGTGIGLSISKCLVGLM G
Sbjct: 302 SNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNG 481
Query: 181 EIGFASKPQVGSTFTFTAVLTRA 113
EIGF S+P++GSTFTFTAV T A
Sbjct: 482 EIGFVSEPKIGSTFTFTAVFTNA 550
Score = 123 bits (263), Expect(2) = 3e-028
Identities = 54/81 (66%), Positives = 58/81 (71%)
Frame = +3 / -2
Query: 114 ALVRTAVKVKVEPTWGLLANPISPLMSPTKHLLMLNPMPVPPWMRAMDGPTCMKGVKTRD 293
ALV TAV VKV P +G L NPISP M PTKHLLML P+PVPP MDGPTCM GV
Sbjct: 549 ALVNTAVNVKVLPIFGSLTNPISPFMRPTKHLLMLRPIPVPPCFLEMDGPTCMNGVNIIG 370
Query: 294 *ASNGIPTPVSSTDIIKLIES 356
S GIP+PVSSTD IKL+ S
Sbjct: 369 CDSRGIPSPVSSTDTIKLMRS 307
Score = 46.0 bits (94), Expect(3) = 4e-049
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -2 / +2
Query: 484 TGTQSANTLSGYPVANRKRSWENFRVFSRE 395
T + +TLSG+PVA+ +RSWE FR FS E
Sbjct: 182 TSKDAEHTLSGFPVADGRRSWEGFRAFSHE 271
Score = 34.1 bits (68), Expect(3) = 4e-049
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2 / +2
Query: 592 QIXXXXXXXSXXXTEXXHIYXTVHVVEEIMXXLEXETGTQS 470
QI S T+ HI+ T+H+VEE+ +E E + S
Sbjct: 65 QIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTS 187
Score = 22.6 bits (43), Expect(2) = 3e-028
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1 / -3
Query: 403 *RLESFPNCAFCSPLGSHLRY 465
*RL P+C LG+HL Y
Sbjct: 263 *RL*ILPSCGDHQQLGNHLMY 201
>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE
Length = 127003
Score = 135 bits (290), Expect(3) = 2e-044
Identities = 54/90 (60%), Positives = 70/90 (77%)
Frame = -2 / +1
Query: 358 SDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGE 179
S++I L+++VEDTG+GIP DAQSR+FTPFMQ S +R +GGTGIGLSISKCLV LM GE
Sbjct: 118012 SETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGE 118191
Query: 178 IGFASKPQVGSTFTFTAVLTRAHSSRNENK 89
IGF S+P++GSTF+FT + + + K
Sbjct: 118192 IGFVSEPEIGSTFSFTGNFRKGETESVDEK 118281
Score = 43.2 bits (88), Expect(3) = 2e-044
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = -2 / +1
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
+N +SEF+G+ ALV+D R +RA+VTRY
Sbjct: 118288 KNNPLASEFQGLRALVIDRRKIRAEVTRY 118374
Score = 40.0 bits (81), Expect(3) = 2e-044
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2 / +1
Query: 496 LEXETGTQSANTLSGYPVANRKRSWENFR 410
L + ++ NTLSG+PV NR +SWE F+
Sbjct: 117904 LNQDMSERTCNTLSGFPVGNRWKSWEKFQ 117990
>gb|AC160840.20| Medicago truncatula clone mth2-27o21, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 119300
Score = 135 bits (290), Expect(3) = 2e-044
Identities = 54/90 (60%), Positives = 70/90 (77%)
Frame = -2 / -2
Query: 358 SDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGE 179
S++I L+++VEDTG+GIP DAQSR+FTPFMQ S +R +GGTGIGLSISKCLV LM GE
Sbjct: 112597 SETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGE 112418
Query: 178 IGFASKPQVGSTFTFTAVLTRAHSSRNENK 89
IGF S+P++GSTF+FT + + + K
Sbjct: 112417 IGFVSEPEIGSTFSFTGNFRKGETESVDEK 112328
Score = 43.2 bits (88), Expect(3) = 2e-044
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = -2 / -2
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
+N +SEF+G+ ALV+D R +RA+VTRY
Sbjct: 112321 KNNPLASEFQGLRALVIDRRKIRAEVTRY 112235
Score = 40.0 bits (81), Expect(3) = 2e-044
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2 / -2
Query: 496 LEXETGTQSANTLSGYPVANRKRSWENFR 410
L + ++ NTLSG+PV NR +SWE F+
Sbjct: 112705 LNQDMSERTCNTLSGFPVGNRWKSWEKFQ 112619
>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
Length = 108871
Score = 135 bits (290), Expect(3) = 2e-044
Identities = 54/90 (60%), Positives = 70/90 (77%)
Frame = -2 / -2
Query: 358 SDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGE 179
S++I L+++VEDTG+GIP DAQSR+FTPFMQ S +R +GGTGIGLSISKCLV LM GE
Sbjct: 107334 SETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGE 107155
Query: 178 IGFASKPQVGSTFTFTAVLTRAHSSRNENK 89
IGF S+P++GSTF+FT + + + K
Sbjct: 107154 IGFVSEPEIGSTFSFTGNFRKGETESVDEK 107065
Score = 43.2 bits (88), Expect(3) = 2e-044
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = -2 / -2
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
+N +SEF+G+ ALV+D R +RA+VTRY
Sbjct: 107058 KNNPLASEFQGLRALVIDRRKIRAEVTRY 106972
Score = 40.0 bits (81), Expect(3) = 2e-044
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2 / -2
Query: 496 LEXETGTQSANTLSGYPVANRKRSWENFR 410
L + ++ NTLSG+PV NR +SWE F+
Sbjct: 107442 LNQDMSERTCNTLSGFPVGNRWKSWEKFQ 107356
>gb|AC174287.2| Medicago truncatula clone mth2-32a8, WORKING DRAFT SEQUENCE, 8
unordered pieces
Length = 107645
Score = 135 bits (290), Expect(3) = 2e-044
Identities = 54/90 (60%), Positives = 70/90 (77%)
Frame = -2 / -1
Query: 358 SDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGE 179
S++I L+++VEDTG+GIP DAQSR+FTPFMQ S +R +GGTGIGLSISKCLV LM GE
Sbjct: 29726 SETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGE 29547
Query: 178 IGFASKPQVGSTFTFTAVLTRAHSSRNENK 89
IGF S+P++GSTF+FT + + + K
Sbjct: 29546 IGFVSEPEIGSTFSFTGNFRKGETESVDEK 29457
Score = 43.2 bits (88), Expect(3) = 2e-044
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = -2 / -1
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
+N +SEF+G+ ALV+D R +RA+VTRY
Sbjct: 29450 KNNPLASEFQGLRALVIDRRKIRAEVTRY 29364
Score = 40.0 bits (81), Expect(3) = 2e-044
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2 / -1
Query: 496 LEXETGTQSANTLSGYPVANRKRSWENFR 410
L + ++ NTLSG+PV NR +SWE F+
Sbjct: 29834 LNQDMSERTCNTLSGFPVGNRWKSWEKFQ 29748
>gb|AL375990.1|AL375990 MtBB20E07F1 MtBB Medicago truncatula cDNA clone MtBB20E07 T3, mRNA
sequence
Length = 494
Score = 148 bits (317), Expect(2) = 1e-042
Identities = 64/89 (71%), Positives = 72/89 (80%)
Frame = -2 / +3
Query: 355 DSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEI 176
D I+LI+SVEDTG GIP ++Q +FTPFMQVG SI+R HGGTGIGLSISKCLVGLM GEI
Sbjct: 3 DLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEI 182
Query: 175 GFASKPQVGSTFTFTAVLTRAHSSRNENK 89
GFAS+P+ GSTFTFTAV S NE K
Sbjct: 183 GFASEPKTGSTFTFTAVFANGLLSSNECK 269
Score = 135 bits (290), Expect(2) = 3e-031
Identities = 60/89 (67%), Positives = 67/89 (75%)
Frame = +3 / -2
Query: 90 LFSFLLEWALVRTAVKVKVEPTWGLLANPISPLMSPTKHLLMLNPMPVPPWMRAMDGPTC 269
L S L L +TAVKVKVEP +G LANPISP M PTKHLLML+P+PVPP R +D PTC
Sbjct: 268 LHSLELRSPLAKTAVKVKVEPVFGSLANPISPFMRPTKHLLMLSPIPVPPCFREIDEPTC 89
Query: 270 MKGVKTRD*ASNGIPTPVSSTDIIKLIES 356
M GVK R * S GIP+PVSSTD IKL+ S
Sbjct: 88 MNGVKMRG*DSLGIPSPVSSTDTIKLMRS 2
Score = 46.4 bits (95), Expect(2) = 1e-042
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = -2 / +3
Query: 109 SSRNENKSSEFKGINALVVDHRPVRAKVTRY 17
+ +++ SSEF+G+NALV+D RP+RAKV++Y
Sbjct: 282 NDQSKPASSEFEGMNALVIDPRPIRAKVSQY 374
Score = 21.7 bits (41), Expect(2) = 3e-031
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2 / -1
Query: 35 TDRPMIYHQCIDPFKF*R 88
++R I +QCI KF*R
Sbjct: 356 SNRSWINNQCIHTLKF*R 303
>gb|BI266143.1|BI266143 NF086E04IN1F1035 Insect herbivory Medicago truncatula cDNA clone
NF086E04IN 5', mRNA sequence
Length = 470
Score = 135 bits (290), Expect(3) = 1e-039
Identities = 54/90 (60%), Positives = 70/90 (77%)
Frame = -2 / +2
Query: 358 SDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGE 179
S++I L+++VEDTG+GIP DAQSR+FTPFMQ S +R +GGTGIGLSISKCLV LM GE
Sbjct: 65 SETIQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGE 244
Query: 178 IGFASKPQVGSTFTFTAVLTRAHSSRNENK 89
IGF S+P++GSTF+FT + + + K
Sbjct: 245 IGFVSEPEIGSTFSFTGNFRKGETESVDEK 334
Score = 40.9 bits (83), Expect(3) = 1e-039
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -2 / +2
Query: 103 RNENKSSEFKGINALVVDHRPVRAKVTRY 17
+N +SEF+G+ AL +D R +RA+VTRY
Sbjct: 341 KNNPLASEFQGLRALXIDRRKIRAEVTRY 427
Score = 26.3 bits (51), Expect(3) = 1e-039
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2 / +2
Query: 451 YPVANRKRSWENFR 410
+PV NR +SWE F+
Sbjct: 2 FPVGNRWKSWEKFQ 43
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
Length = 151594
Score = 123 bits (264), Expect(3) = 7e-038
Identities = 49/76 (64%), Positives = 62/76 (81%)
Frame = -2 / -3
Query: 355 DSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEI 176
+ ++L++ VEDTG+GIPF AQ R+F PF+Q S +R +GGTGIGLSISKCLV LM G+I
Sbjct: 127688 EQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQI 127509
Query: 175 GFASKPQVGSTFTFTA 128
F S+PQVGSTF+FTA
Sbjct: 127508 NFISRPQVGSTFSFTA 127461
Score = 41.4 bits (84), Expect(3) = 7e-038
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / -3
Query: 124 LTRAHSSRNENKSSEFKGINALVVDHRPVRAKVTRY 17
+T E+ S F+G+ A+VVD +PVRA VTRY
Sbjct: 127433 ITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRY 127326
Score = 31.3 bits (62), Expect(3) = 7e-038
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2 / -3
Query: 484 TGTQSANTLSGYPVANRKRSWENF 413
+G + TLSGY A+ + +W+NF
Sbjct: 127832 SGGYNLKTLSGYEAADERNNWDNF 127761
>gb|AC144931.28| Medicago truncatula clone mth2-22b18, complete sequence
Length = 122821
Score = 123 bits (264), Expect(3) = 7e-038
Identities = 49/76 (64%), Positives = 62/76 (81%)
Frame = -2 / +3
Query: 355 DSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEI 176
+ ++L++ VEDTG+GIPF AQ R+F PF+Q S +R +GGTGIGLSISKCLV LM G+I
Sbjct: 23907 EQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQI 24086
Query: 175 GFASKPQVGSTFTFTA 128
F S+PQVGSTF+FTA
Sbjct: 24087 NFISRPQVGSTFSFTA 24134
Score = 41.4 bits (84), Expect(3) = 7e-038
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +3
Query: 124 LTRAHSSRNENKSSEFKGINALVVDHRPVRAKVTRY 17
+T E+ S F+G+ A+VVD +PVRA VTRY
Sbjct: 24162 ITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRY 24269
Score = 31.3 bits (62), Expect(3) = 7e-038
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2 / +3
Query: 484 TGTQSANTLSGYPVANRKRSWENF 413
+G + TLSGY A+ + +W+NF
Sbjct: 23763 SGGYNLKTLSGYEAADERNNWDNF 23834
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
Length = 107448
Score = 123 bits (264), Expect(3) = 7e-038
Identities = 49/76 (64%), Positives = 62/76 (81%)
Frame = -2 / +1
Query: 355 DSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEI 176
+ ++L++ VEDTG+GIPF AQ R+F PF+Q S +R +GGTGIGLSISKCLV LM G+I
Sbjct: 52372 EQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQI 52551
Query: 175 GFASKPQVGSTFTFTA 128
F S+PQVGSTF+FTA
Sbjct: 52552 NFISRPQVGSTFSFTA 52599
Score = 41.4 bits (84), Expect(3) = 7e-038
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +1
Query: 124 LTRAHSSRNENKSSEFKGINALVVDHRPVRAKVTRY 17
+T E+ S F+G+ A+VVD +PVRA VTRY
Sbjct: 52627 ITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRY 52734
Score = 31.3 bits (62), Expect(3) = 7e-038
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 484 TGTQSANTLSGYPVANRKRSWENF 413
+G + TLSGY A+ + +W+NF
Sbjct: 52228 SGGYNLKTLSGYEAADERNNWDNF 52299
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
Length = 99712
Score = 123 bits (264), Expect(3) = 7e-038
Identities = 49/76 (64%), Positives = 62/76 (81%)
Frame = -2 / +1
Query: 355 DSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEI 176
+ ++L++ VEDTG+GIPF AQ R+F PF+Q S +R +GGTGIGLSISKCLV LM G+I
Sbjct: 41890 EQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQI 42069
Query: 175 GFASKPQVGSTFTFTA 128
F S+PQVGSTF+FTA
Sbjct: 42070 NFISRPQVGSTFSFTA 42117
Score = 41.4 bits (84), Expect(3) = 7e-038
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2 / +1
Query: 124 LTRAHSSRNENKSSEFKGINALVVDHRPVRAKVTRY 17
+T E+ S F+G+ A+VVD +PVRA VTRY
Sbjct: 42145 ITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRY 42252
Score = 31.3 bits (62), Expect(3) = 7e-038
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2 / +1
Query: 484 TGTQSANTLSGYPVANRKRSWENF 413
+G + TLSGY A+ + +W+NF
Sbjct: 41746 SGGYNLKTLSGYEAADERNNWDNF 41817
>gb|CX534453.1|CX534453 s13dNF76B04MJ029_328507 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 615
Score = 101 bits (216), Expect(2) = 1e-028
Identities = 44/60 (73%), Positives = 48/60 (80%)
Frame = -2 / +3
Query: 268 QVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTFTAVLTRAHSSRNENK 89
+VG SI+R HGGTGIGLSISKCLVGLM GEIGFAS+P+ GSTFTFTAV S NE K
Sbjct: 9 EVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKTGSTFTFTAVFANGLLSSNECK 188
Score = 46.0 bits (94), Expect(2) = 1e-028
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = -2 / +3
Query: 88 SSEFKGINALVVDHRPVRAKVTRY 17
SSEF+G+NALV+D RP+RAKV++Y
Sbjct: 222 SSEFEGMNALVIDPRPIRAKVSQY 293
>gb|CX532373.1|CX532373 s13dNF61A03MJ017_271039 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 653
Score = 70.3 bits (147), Expect(2) = 5e-025
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = -2 / +3
Query: 373 FAPIASDSISLIISVEDTGVGIPFDAQSRVFTPFMQVGPSIARIHG 236
F+ +SD I+LI+SVEDTG GIP ++Q +FTPFMQVG SI+R HG
Sbjct: 516 FSSTSSDLINLIVSVEDTGDGIPRESQPLIFTPFMQVGSSISRKHG 653
Score = 65.2 bits (136), Expect(2) = 5e-025
Identities = 26/66 (39%), Positives = 38/66 (57%)
Frame = -2 / +3
Query: 592 QIXXXXXXXSXXXTEXXHIYXTVHVVEEIMXXLEXETGTQSANTLSGYPVANRKRSWENF 413
QI S T+ HI+ T+H+VEEI+ +E + + NTLSG+PV SW+ F
Sbjct: 303 QIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFPVVKSCLSWKGF 482
Query: 412 RVFSRE 395
+ FS+E
Sbjct: 483 KAFSQE 500
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 509,926,209
Number of Sequences: 392609
Number of extensions: 6951068
Number of successful extensions: 43173
Number of sequences better than 1.0e-020: 20
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 18838972046
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)