TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN1e04.yg.2.1
(361 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR323265.1| mte1-50A7FM1 BAC end, cultivar Jemalong A17... 120 8e-027
gb|AC137994.19| Medicago truncatula clone mth2-23f15, compl... 120 8e-027
tpg|BK005119.1| TPA: Medicago truncatula auxin efflux carri... 120 8e-027
gb|AY553212.1| Medicago truncatula putative auxin efflux ca... 116 1e-025
gb|AC157502.2| Medicago truncatula chromosome 7 BAC clone m... 116 1e-025
gb|AC135795.21| Medicago truncatula clone mth2-28g10, compl... 116 1e-025
gb|AY115839.1| Medicago truncatula auxin efflux carrier pro... 111 3e-024
gb|AC138199.22| Medicago truncatula clone mth2-15g10, compl... 111 3e-024
gb|CG931016.1|CG931016 MBEGC87TF mth2 Medicago truncatula g... 108 3e-023
gb|AC137078.24| Medicago truncatula clone mth2-10e12, compl... 108 3e-023
gb|AY115840.1| Medicago truncatula auxin efflux carrier pro... 108 3e-023
gb|AY553210.1| Medicago truncatula putative auxin efflux ca... 108 3e-023
gb|AC174357.3| Medicago truncatula clone mth2-26c10, WORKIN... 108 3e-023
gb|AY115836.1| Medicago truncatula auxin efflux carrier pro... 108 4e-023
gb|AY115838.1| Medicago truncatula auxin efflux carrier pro... 108 4e-023
gb|AY115837.1| Medicago truncatula auxin efflux carrier pro... 107 8e-023
>emb|CR323265.1| mte1-50A7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 861
Score = 120 bits (257), Expect = 8e-027
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = +1 / -3
Query: 64 IPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQ 243
I MIS +YHV+ TVPLYV MI+AY+S++W+K+FT EQCSGINKFVAKFSIPLLSFQ
Sbjct: 364 IHNMISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQ 185
Query: 244 ILSTNXXXXXNLKXXXXXXXQK 309
++S+N +LK QK
Sbjct: 184 VISSNNIYKMSLKLMFSDFIQK 119
>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
Length = 131563
Score = 120 bits (257), Expect = 8e-027
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = +1 / -3
Query: 64 IPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQ 243
I MIS +YHV+ TVPLYV MI+AY+S++W+K+FT EQCSGINKFVAKFSIPLLSFQ
Sbjct: 89702 IHNMISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQ 89523
Query: 244 ILSTNXXXXXNLKXXXXXXXQK 309
++S+N +LK QK
Sbjct: 89522 VISSNNIYKMSLKLMFSDFIQK 89457
>tpg|BK005119.1| TPA: Medicago truncatula auxin efflux carrier protein (PIN8) gene,
complete cds
Length = 4877
Score = 120 bits (257), Expect = 8e-027
Identities = 49/82 (59%), Positives = 61/82 (74%)
Frame = +1 / +2
Query: 64 IPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQ 243
I MIS +YHV+ TVPLYV MI+AY+S++W+K+FT EQCSGINKFVAKFSIPLLSFQ
Sbjct: 992 IHNMISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQ 1171
Query: 244 ILSTNXXXXXNLKXXXXXXXQK 309
++S+N +LK QK
Sbjct: 1172 VISSNNIYKMSLKLMFSDFIQK 1237
>gb|AY553212.1| Medicago truncatula putative auxin efflux carrier protein 10
(PIN10) gene, complete cds
Length = 3151
Score = 116 bits (249), Expect = 1e-025
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +YHVL VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 309 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 488
Query: 253 TNXXXXXNLKXXXXXXXQKSXXL 321
TN N + QK+ L
Sbjct: 489 TNNPYTMNYRFIAADSLQKTIIL 557
>gb|AC157502.2| Medicago truncatula chromosome 7 BAC clone mte1-56e23, complete
sequence
Length = 108844
Score = 116 bits (249), Expect = 1e-025
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +1 / -1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +YHVL VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 2299 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 2120
Query: 253 TNXXXXXNLKXXXXXXXQKSXXL 321
TN N + QK+ L
Sbjct: 2119 TNNPYTMNYRFIAADSLQKTIIL 2051
>gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete sequence
Length = 110937
Score = 116 bits (249), Expect = 1e-025
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +1 / -1
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MIS +YHVL VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF +S
Sbjct: 85596 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 85417
Query: 253 TNXXXXXNLKXXXXXXXQKSXXL 321
TN N + QK+ L
Sbjct: 85416 TNNPYTMNYRFIAADSLQKTIIL 85348
>gb|AY115839.1| Medicago truncatula auxin efflux carrier protein (PIN4) gene,
complete cds
Length = 5239
Score = 111 bits (238), Expect = 3e-024
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +1 / +2
Query: 58 PPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLS 237
P + MI+ YHV+ VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLS
Sbjct: 146 PQLKNMITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLS 325
Query: 238 FQILSTNXXXXXNLKXXXXXXXQK 309
F +++N NL+ QK
Sbjct: 326 FHFIASNNPYKMNLRFLAADTLQK 397
>gb|AC138199.22| Medicago truncatula clone mth2-15g10, complete sequence
Length = 109479
Score = 111 bits (238), Expect = 3e-024
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +1 / +2
Query: 58 PPIPTMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLS 237
P + MI+ YHV+ VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLS
Sbjct: 19718 PQLKNMITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLS 19897
Query: 238 FQILSTNXXXXXNLKXXXXXXXQK 309
F +++N NL+ QK
Sbjct: 19898 FHFIASNNPYKMNLRFLAADTLQK 19969
>gb|CG931016.1|CG931016 MBEGC87TF mth2 Medicago truncatula genomic clone 48P5, DNA sequence
Length = 856
Score = 108 bits (231), Expect = 3e-023
Identities = 43/92 (46%), Positives = 59/92 (64%)
Frame = +1 / -3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF ++
Sbjct: 611 MITLTDFYHVMTSMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIA 432
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRV 348
+N N + QK LL + V
Sbjct: 431 SNNPYKMNTRFLVADTLQKIIVLLALTIWANV 336
>gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete sequence
Length = 144306
Score = 108 bits (231), Expect = 3e-023
Identities = 43/92 (46%), Positives = 59/92 (64%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF ++
Sbjct: 123861 MITLTDFYHVMTSMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIA 124040
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRV 348
+N N + QK LL + V
Sbjct: 124041 SNNPYKMNTRFLVADTLQKIIVLLALTIWANV 124136
>gb|AY115840.1| Medicago truncatula auxin efflux carrier protein (PIN5) gene,
complete cds
Length = 2168
Score = 108 bits (231), Expect = 3e-023
Identities = 43/92 (46%), Positives = 59/92 (64%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ YHV+ VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF ++
Sbjct: 128 MITLTDFYHVMTSMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIA 307
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFAXASRV 348
+N N + QK LL + V
Sbjct: 308 SNNPYKMNTRFLVADTLQKIIVLLALTIWANV 403
>gb|AY553210.1| Medicago truncatula putative auxin efflux carrier protein 7 (PIN7)
gene, complete cds
Length = 2754
Score = 108 bits (231), Expect = 3e-023
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +1 / +1
Query: 70 TMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQIL 249
TMI+ IY+VL VPLYVAMI+AY S++WWK+FTP+QCSGIN+FV+ F++PLLSF +
Sbjct: 328 TMITGKDIYNVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVSVFAVPLLSFHFI 507
Query: 250 STNXXXXXNLKXXXXXXXQK 309
S+N N QK
Sbjct: 508 SSNDPYAMNYHFLAADSLQK 567
>gb|AC174357.3| Medicago truncatula clone mth2-26c10, WORKING DRAFT SEQUENCE, 5
unordered pieces
Length = 99386
Score = 108 bits (231), Expect = 3e-023
Identities = 43/80 (53%), Positives = 56/80 (70%)
Frame = +1 / -3
Query: 70 TMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQIL 249
TMI+ IY+VL VPLYVAMI+AY S++WWK+FTP+QCSGIN+FV+ F++PLLSF +
Sbjct: 89052 TMITGKDIYNVLAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVSVFAVPLLSFHFI 88873
Query: 250 STNXXXXXNLKXXXXXXXQK 309
S+N N QK
Sbjct: 88872 SSNDPYAMNYHFLAADSLQK 88813
Score = 107 bits (228), Expect = 8e-023
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +1 / -1
Query: 70 TMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQIL 249
TMI+ IY V VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF +
Sbjct: 83744 TMITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFI 83565
Query: 250 STNXXXXXNLKXXXXXXXQK 309
S+N N QK
Sbjct: 83564 SSNDPYAMNYHFLAADSLQK 83505
>gb|AY115836.1| Medicago truncatula auxin efflux carrier protein (PIN1) gene,
complete cds
Length = 4127
Score = 108 bits (230), Expect = 4e-023
Identities = 44/84 (52%), Positives = 57/84 (67%)
Frame = +1 / +3
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ +Y VL VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 366 MITWHDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 545
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLL 324
TN N + QK LL
Sbjct: 546 TNNPYAMNYRFIAADTLQKIIMLL 617
>gb|AY115838.1| Medicago truncatula auxin efflux carrier protein (PIN3) gene,
complete cds
Length = 5583
Score = 108 bits (230), Expect = 4e-023
Identities = 43/87 (49%), Positives = 58/87 (66%)
Frame = +1 / +2
Query: 73 MISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQILS 252
MI+ +Y VL VPLYVAMI+AY S++WWK+F+P+QCSGIN+FVA F++PLLSF +S
Sbjct: 650 MITLKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFIS 829
Query: 253 TNXXXXXNLKXXXXXXXQKSXXLLGFA 333
TN N + QK L+ +
Sbjct: 830 TNNPYQMNFRFIAADTLQKIIMLVALS 910
>gb|AY115837.1| Medicago truncatula auxin efflux carrier protein (PIN2) gene,
complete cds
Length = 3325
Score = 107 bits (228), Expect = 8e-023
Identities = 43/80 (53%), Positives = 54/80 (67%)
Frame = +1 / +1
Query: 70 TMISXXXIYHVLEETVPLYVAMIVAYLSIQWWKLFTPEQCSGINKFVAKFSIPLLSFQIL 249
TMI+ IY V VPLYVAMI+AY S++WWK+FTP+QCSGIN+FVA F++PLLSF +
Sbjct: 379 TMITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFI 558
Query: 250 STNXXXXXNLKXXXXXXXQK 309
S+N N QK
Sbjct: 559 SSNDPYAMNYHFLAADSLQK 618
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 278,334,437
Number of Sequences: 392609
Number of extensions: 2823390
Number of successful extensions: 67457
Number of sequences better than 1.0e-020: 18
length of database: 147,244,331
effective HSP length: 51
effective length of database: 127,221,272
effective search space used: 8651046496
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)