TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW692487.2|AW692487 NF052A09ST1F1000 Developing stem Med... 306 3e-082
gb|AC144540.6| Medicago truncatula clone mth2-19p16, comple... 122 9e-065
gb|AC144657.6| Medicago truncatula clone mth2-16a6, complet... 122 2e-064
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 117 9e-059
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 117 3e-058
gb|BM779676.1|BM779676 EST590252 KV2 Medicago truncatula cD... 222 4e-057
gb|BM779758.1|BM779758 EST590334 KV2 Medicago truncatula cD... 222 4e-057
gb|AI974281.1|AI974281 T110283e KV0 Medicago truncatula cDN... 127 2e-044
gb|CB893717.1|CB893717 EST646509 HOGA Medicago truncatula c... 112 6e-024
gb|AC151822.29| Medicago truncatula clone mth2-32h21, compl... 66 2e-021
>gb|AW692487.2|AW692487 NF052A09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF052A09ST 5', mRNA sequence
Length = 603
Score = 306 bits (662), Expect = 3e-082
Identities = 125/152 (82%), Positives = 140/152 (92%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW++IMRFF+NPRKP+ILALARPDPKKNITTLVKAFGE R LR LANLTLIMGNRD IDE
Sbjct: 34 IWSEIMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDE 213
Query: 382 MSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGVFINCALVEPFG 561
MSST+++VL S LKLIDKYDLYGQVAYPKHHKQS+VP+IYRLAA+TKGVF+N A++EPFG
Sbjct: 214 MSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTKGVFVNPAIIEPFG 393
Query: 562 LTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
LTLIE AYGLPM T+NGGPV IHRVLDNG+
Sbjct: 394 LTLIEAAAYGLPMVATKNGGPVDIHRVLDNGL 489
Score = 202 bits (435), Expect = 6e-051
Identities = 93/151 (61%), Positives = 102/151 (67%)
Frame = -1 / -2
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PLS TR + TGPPF V +G P A SIKV PNGS A L KTPFV AA+R ISGTSDCL
Sbjct: 485 PLSSTR*ISTGPPFLVATIGNP*AAASIKVRPNGSMIAGLTKTPFVFAARRYISGTSDCL 306
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSRCSPNALTR 294
WCLGYATCPYRSYLSINLS E +T VLDISS+ SR P+I+VR A L R SPNA T+
Sbjct: 305 WCLGYATCPYRSYLSINLSTERRTEELVLDISSIPSRLPIINVRLASSLRGRHSPNAFTK 126
Query: 293 VVIFFXXXXXXXXXXXXXXXFEKKRIISAQI 201
VV+FF F K RIIS QI
Sbjct: 125 VVMFFLGSGLARASITGLRGFVKNRIISDQI 33
Score = 163 bits (351), Expect = 2e-039
Identities = 75/154 (48%), Positives = 97/154 (62%)
Frame = -3 / -1
Query: 654 SIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLL 475
+I+K PM + R TI H I LN G++K N IDK++ C R *TI RN RL
Sbjct: 486 TIVKYPMNINRTTIFSSNHWQPISSCLN*GKAKRLNDSRIDKDTLCLRC*TIYFRNIRLF 307
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFTMFTKCFD* 295
+V +CHL I +I IN LE * +N CA*HFIN I++ H+ CK+ +S+ T F+KCF
Sbjct: 306 VVFRICHLPIQVILINQLEY*EKNRRTCA*HFINSISVTHN*CKVSKLSKRTAFSKCFHQ 127
Query: 294 SSDILLRIRTSKSKNHWLPGV*EEAHYISPNRWI 193
S D+LLRI + KSK H L V +E HY+ PNRWI
Sbjct: 126 SCDVLLRIWSGKSKYHRLARVCKEPHYLRPNRWI 25
Score = 100 bits (214), Expect(2) = 4e-023
Identities = 58/117 (49%), Positives = 70/117 (59%)
Frame = +2 / +2
Query: 302 KHLVNIVN*EI*QILH*SWGIVMSLMKCQAQMQLF*LQHSS*LINMIYMDKWHTPSTISN 481
KHL N V E LH* W M LMKCQAQ+ LF Q+SS*LI+M M KWH +T +N
Sbjct: 134 KHLENAVLLESLLTLH*LWVTEMELMKCQAQVLLFFSQYSS*LISMTCMGKWHILNTTNN 313
Query: 482 LKFLIFIV*LREQKEFLSIVHWLNHLDSP*LRXXHMVYPXXXPEMVGLXTYIGFLIM 652
L FL +IV* R Q+ LSI+ L+ L P*LR M +MV L +IG+L M
Sbjct: 314 LMFLKYIV*QRRQRVSLSILLSLSRLALP*LRQLLMGCQWLLLKMVVLLIFIGYLTM 484
Score = 28.1 bits (55), Expect(2) = 4e-023
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2 / +2
Query: 191 QIHLFGLI*CASSQTPGSQ*F 253
+IHLFGL *C S QT S *+
Sbjct: 23 KIHLFGLR*CGSLQTLASL*Y 85
>gb|AC144540.6| Medicago truncatula clone mth2-19p16, complete sequence
Length = 78738
Score = 122 bits (260), Expect(6) = 9e-065
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = +1 / -1
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTK 522
TLIMGNRD IDEMSST+++VL S LKLIDKYDLYGQVAYPKHHKQS+VP+IYRLAA+TK
Sbjct: 57273 TLIMGNRDGIDEMSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTK 57097
Score = 114 bits (243), Expect(5) = 9e-035
Identities = 47/67 (70%), Positives = 55/67 (82%)
Frame = -1 / +2
Query: 545 NAQLIKTPFVLAAKR*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTS 366
++Q+ K FV AA+R ISGTSDCLWCLGYATCPYRSYLSINLS E +T VLDISS+ S
Sbjct: 57074 SSQMDKVTFVFAARRYISGTSDCLWCLGYATCPYRSYLSINLSTERRTEELVLDISSIPS 57253
Query: 365 RFPMISV 345
R P+I+V
Sbjct: 57254 RLPIINV 57274
Score = 92.3 bits (195), Expect(6) = 9e-065
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = +1 / -2
Query: 214 IMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANL 345
IMRFF+NPRKP+ILALARPDPKKNITTLVKAFGE R LR LANL
Sbjct: 57524 IMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANL 57393
Score = 48.7 bits (100), Expect(5) = 9e-035
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = -3 / +3
Query: 345 KIC*ISQFTMFTKCFD*SSDILLRIRTSKSKNHWLPGV*EEAHYI 211
K+ +S+ T F+KCF S D+LLRI + KSK H L V +E HY+
Sbjct: 57393 KVSKLSKRTAFSKCFHQSCDVLLRIWSGKSKYHRLARVCKEPHYL 57527
Score = 45.5 bits (93), Expect(6) = 9e-065
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1 / -3
Query: 10 DGFDLTMARKLRARIRRGVSCFGR 81
DGFD + RK+RARIRR VSC+GR
Sbjct: 58537 DGFDPVLERKIRARIRRNVSCYGR 58466
Score = 44.6 bits (91), Expect(6) = 9e-065
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / -3
Query: 568 LIEXXAYGLPMXXTRNGGPVXIHRV 642
L + AYGLPM T+NGGPV IHRV
Sbjct: 55891 LEQAAAYGLPMVATKNGGPVDIHRV 55817
Score = 38.6 bits (78), Expect(6) = 9e-065
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1 / -3
Query: 520 KGVFINCALVEPFGLTLIE 576
+GVF+N A++EPFGLTLIE
Sbjct: 56026 QGVFVNPAIIEPFGLTLIE 55970
Score = 33.1 bits (66), Expect(6) = 9e-065
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / -2
Query: 103 IPPGMEFSHIAPHDVDL 153
IPPGMEF HI P D D+
Sbjct: 57800 IPPGMEFHHIVPLDGDI 57750
Score = 29.9 bits (59), Expect(5) = 9e-035
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2 / +1
Query: 76 QSSSHHALFLL*VSGP*LDQNHH 8
++SSH+A LL P LDQNHH
Sbjct: 58471 RNSSHYA*SLLVFYAPILDQNHH 58539
Score = 29.0 bits (57), Expect(5) = 9e-035
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1 / +3
Query: 575 SIKVSPNGSTNAQLIKTP 522
SIKV PNGS A L KTP
Sbjct: 55971 SIKVRPNGSMIAGLTKTP 56024
Score = 28.1 bits (55), Expect(5) = 9e-035
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1 / +3
Query: 647 SRTRCMXTGPPFRVXXMGRP 588
+ TR + TGPPF V +G P
Sbjct: 55812 NHTR*ISTGPPFLVATIGNP 55871
>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
Length = 92738
Score = 122 bits (260), Expect(6) = 2e-064
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = +1 / +1
Query: 346 TLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTK 522
TLIMGNRD IDEMSST+++VL S LKLIDKYDLYGQVAYPKHHKQS+VP+IYRLAA+TK
Sbjct: 53569 TLIMGNRDGIDEMSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEIYRLAAKTK 53745
Score = 114 bits (243), Expect(5) = 2e-034
Identities = 47/67 (70%), Positives = 55/67 (82%)
Frame = -1 / -1
Query: 545 NAQLIKTPFVLAAKR*ISGTSDCLWCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTS 366
++Q+ K FV AA+R ISGTSDCLWCLGYATCPYRSYLSINLS E +T VLDISS+ S
Sbjct: 53768 SSQMDKVTFVFAARRYISGTSDCLWCLGYATCPYRSYLSINLSTERRTEELVLDISSIPS 53589
Query: 365 RFPMISV 345
R P+I+V
Sbjct: 53588 RLPIINV 53568
Score = 92.3 bits (195), Expect(6) = 2e-064
Identities = 39/44 (88%), Positives = 41/44 (93%)
Frame = +1 / +2
Query: 214 IMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANL 345
IMRFF+NPRKP+ILALARPDPKKNITTLVKAFGE R LR LANL
Sbjct: 53318 IMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANL 53449
Score = 48.7 bits (100), Expect(5) = 2e-034
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = -3 / -2
Query: 345 KIC*ISQFTMFTKCFD*SSDILLRIRTSKSKNHWLPGV*EEAHYI 211
K+ +S+ T F+KCF S D+LLRI + KSK H L V +E HY+
Sbjct: 53449 KVSKLSKRTAFSKCFHQSCDVLLRIWSGKSKYHRLARVCKEPHYL 53315
Score = 45.5 bits (93), Expect(6) = 2e-064
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1 / +3
Query: 10 DGFDLTMARKLRARIRRGVSCFGR 81
DGFD + RK+RARIRR VSC+GR
Sbjct: 52305 DGFDPVLERKIRARIRRNVSCYGR 52376
Score = 44.6 bits (91), Expect(6) = 2e-064
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1 / +3
Query: 568 LIEXXAYGLPMXXTRNGGPVXIHRV 642
L + AYGLPM T+NGGPV IHRV
Sbjct: 54951 LEQAAAYGLPMVATKNGGPVDIHRV 55025
Score = 38.6 bits (78), Expect(6) = 2e-064
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1 / +3
Query: 520 KGVFINCALVEPFGLTLIE 576
+GVF+N A++EPFGLTLIE
Sbjct: 54816 QGVFVNPAIIEPFGLTLIE 54872
Score = 33.1 bits (66), Expect(6) = 2e-064
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1 / +2
Query: 103 IPPGMEFSHIAPHDVDL 153
IPPGMEF HI P D D+
Sbjct: 53042 IPPGMEFHHIVPLDGDI 53092
Score = 29.9 bits (59), Expect(5) = 2e-034
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2 / -3
Query: 76 QSSSHHALFLL*VSGP*LDQNHH 8
++SSH+A LL P LDQNHH
Sbjct: 52371 RNSSHYA*SLLVFYAPILDQNHH 52303
Score = 29.0 bits (57), Expect(5) = 2e-034
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -1 / -2
Query: 575 SIKVSPNGSTNAQLIKTP 522
SIKV PNGS A L KTP
Sbjct: 54871 SIKVRPNGSMIAGLTKTP 54818
Score = 28.1 bits (55), Expect(5) = 2e-034
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1 / -2
Query: 647 SRTRCMXTGPPFRVXXMGRP 588
+ TR + TGPPF V +G P
Sbjct: 55030 NHTR*ISTGPPFLVATIGNP 54971
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 117 bits (251), Expect(5) = 9e-059
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = +1 / +3
Query: 349 LIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGV 528
LIMGNRD +DEMSS NA+VL + LKLIDKYDLYGQVAYPKHHKQS+VPDIYR +A+TK
Sbjct: 59439 LIMGNRDDVDEMSSGNASVLVTVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRYSAKTKVY 59618
Query: 529 FIN 537
+N
Sbjct: 59619 CLN 59627
Score = 88.1 bits (186), Expect(5) = 9e-059
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = +1 / +1
Query: 214 IMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGN 363
+MRFF+NP KP+ILAL+RPDPKKN+TTL+KAFGE R LR LANL ++ +
Sbjct: 59221 VMRFFTNPHKPVILALSRPDPKKNLTTLLKAFGESRPLRELANLVSLLNS 59370
Score = 45.1 bits (92), Expect(5) = 9e-059
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1 / +2
Query: 568 LIEXXAYGLPMXXTRNGGPVXIHRV 642
L++ A+GLPM T+NGGPV IHRV
Sbjct: 59999 LVQAAAHGLPMVATKNGGPVDIHRV 60073
Score = 41.8 bits (85), Expect(5) = 9e-059
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAI 105
DGFD+ + + LRAR RRGV+C GR M I
Sbjct: 58408 DGFDVKLEKVLRARARRGVNCHGRYMPRMAVI 58503
Score = 40.0 bits (81), Expect(5) = 9e-059
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1 / +3
Query: 523 GVFINCALVEPFGLTLIE 576
GVFIN ALVEPFGLTLIE
Sbjct: 59856 GVFINPALVEPFGLTLIE 59909
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 117 bits (251), Expect(5) = 3e-058
Identities = 48/63 (76%), Positives = 55/63 (87%)
Frame = +1 / -2
Query: 349 LIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDIYRLAARTKGV 528
LIMGNRD +DEMSS NA+VL + LKLIDKYDLYGQVAYPKHHKQS+VPDIYR +A+TK
Sbjct: 114395 LIMGNRDDVDEMSSGNASVLVTVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRYSAKTKVY 114216
Query: 529 FIN 537
+N
Sbjct: 114215 CLN 114207
Score = 88.1 bits (186), Expect(5) = 3e-058
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = +1 / -3
Query: 214 IMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGN 363
+MRFF+NP KP+ILAL+RPDPKKN+TTL+KAFGE R LR LANL ++ +
Sbjct: 114613 VMRFFTNPHKPVILALSRPDPKKNLTTLLKAFGESRPLRELANLVSLLNS 114464
Score = 45.1 bits (92), Expect(5) = 3e-058
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1 / -1
Query: 568 LIEXXAYGLPMXXTRNGGPVXIHRV 642
L++ A+GLPM T+NGGPV IHRV
Sbjct: 113835 LVQAAAHGLPMVATKNGGPVDIHRV 113761
Score = 41.8 bits (85), Expect(5) = 3e-058
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1 / -3
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAI 105
DGFD+ + + LRAR RRGV+C GR M I
Sbjct: 115426 DGFDVKLEKVLRARARRGVNCHGRYMPRMAVI 115331
Score = 40.0 bits (81), Expect(5) = 3e-058
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +1 / -2
Query: 523 GVFINCALVEPFGLTLIE 576
GVFIN ALVEPFGLTLIE
Sbjct: 113978 GVFINPALVEPFGLTLIE 113925
>gb|BM779676.1|BM779676 EST590252 KV2 Medicago truncatula cDNA clone pKV2-52B16, mRNA
sequence
Length = 768
Score = 222 bits (480), Expect = 4e-057
Identities = 91/113 (80%), Positives = 102/113 (90%)
Frame = +1 / +2
Query: 319 RELRNLANLTLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDI 498
R LR LANLTLIMGNRD IDEMSST+++VL S LKLIDKYDLYGQVAYPKHHKQS+VP+I
Sbjct: 2 RPLRELANLTLIMGNRDGIDEMSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEI 181
Query: 499 YRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
YRLAA+TKGVF+N A++EPFGLTLIE AYGLPM T+NGGPV IHRVLDNG+
Sbjct: 182 YRLAAKTKGVFVNPAIIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGL 340
Score = 173 bits (373), Expect = 2e-042
Identities = 76/112 (67%), Positives = 83/112 (74%)
Frame = -1 / -1
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PLS TR + TGPPF V +G P A SIKV PNGS A L KTPFV AA+R ISGTSDCL
Sbjct: 336 PLSSTR*ISTGPPFLVATIGNP*AAASIKVRPNGSMIAGLTKTPFVFAARRYISGTSDCL 157
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSR 318
WCLGYATCPYRSYLSINLS E +T VLDISS+ SR P+I+VR A L R
Sbjct: 156 WCLGYATCPYRSYLSINLSTERRTEELVLDISSIPSRLPIINVRLASSLRGR 1
Score = 108 bits (231), Expect = 8e-023
Identities = 51/112 (45%), Positives = 68/112 (60%)
Frame = -3 / -3
Query: 654 SIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLL 475
+I+K PM + R TI H I LN G++K N IDK++ C R *TI RN RL
Sbjct: 337 TIVKYPMNINRTTIFSSNHWQPISSCLN*GKAKRLNDSRIDKDTLCLRC*TIYFRNIRLF 158
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFT 319
+V +CHL I +I IN LE * +N CA*HFIN I++ H+ CK+ +S+ T
Sbjct: 157 VVFRICHLPIQVILINQLEY*EKNRRTCA*HFINSISVTHN*CKVSKLSKRT 2
>gb|BM779758.1|BM779758 EST590334 KV2 Medicago truncatula cDNA clone pKV2-53A3, mRNA
sequence
Length = 791
Score = 222 bits (480), Expect = 4e-057
Identities = 91/113 (80%), Positives = 102/113 (90%)
Frame = +1 / +3
Query: 319 RELRNLANLTLIMGNRDVIDEMSSTNAAVLTSALKLIDKYDLYGQVAYPKHHKQSEVPDI 498
R LR LANLTLIMGNRD IDEMSST+++VL S LKLIDKYDLYGQVAYPKHHKQS+VP+I
Sbjct: 24 RPLRELANLTLIMGNRDGIDEMSSTSSSVLLSVLKLIDKYDLYGQVAYPKHHKQSDVPEI 203
Query: 499 YRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
YRLAA+TKGVF+N A++EPFGLTLIE AYGLPM T+NGGPV IHRVLDNG+
Sbjct: 204 YRLAAKTKGVFVNPAIIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGL 362
Score = 173 bits (373), Expect = 2e-042
Identities = 76/112 (67%), Positives = 83/112 (74%)
Frame = -1 / -2
Query: 653 PLSRTRCMXTGPPFRVXXMGRPYAXXSIKVSPNGSTNAQLIKTPFVLAAKR*ISGTSDCL 474
PLS TR + TGPPF V +G P A SIKV PNGS A L KTPFV AA+R ISGTSDCL
Sbjct: 358 PLSSTR*ISTGPPFLVATIGNP*AAASIKVRPNGSMIAGLTKTPFVFAARRYISGTSDCL 179
Query: 473 WCLGYATCPYRSYLSINLSAEVKTAAFVLDISSMTSRFPMISVRFAKFLSSR 318
WCLGYATCPYRSYLSINLS E +T VLDISS+ SR P+I+VR A L R
Sbjct: 178 WCLGYATCPYRSYLSINLSTERRTEELVLDISSIPSRLPIINVRLASSLRGR 23
Score = 108 bits (231), Expect = 8e-023
Identities = 51/112 (45%), Positives = 68/112 (60%)
Frame = -3 / -1
Query: 654 SIIKNPMYVXRPTISGXXHG*TICXXLNQGESKWFNQCTIDKNSFCSRS*TINIRNFRLL 475
+I+K PM + R TI H I LN G++K N IDK++ C R *TI RN RL
Sbjct: 359 TIVKYPMNINRTTIFSSNHWQPISSCLN*GKAKRLNDSRIDKDTLCLRC*TIYFRNIRLF 180
Query: 474 MVLGVCHLSI*IIFIN*LEC*SQNSCICA*HFINDITIPHDQCKIC*ISQFT 319
+V +CHL I +I IN LE * +N CA*HFIN I++ H+ CK+ +S+ T
Sbjct: 179 VVFRICHLPIQVILINQLEY*EKNRRTCA*HFINSISVTHN*CKVSKLSKRT 24
>gb|AI974281.1|AI974281 T110283e KV0 Medicago truncatula cDNA clone pKV0-1N5, mRNA sequence
Length = 399
Score = 127 bits (271), Expect(2) = 2e-044
Identities = 53/61 (86%), Positives = 57/61 (93%)
Frame = +1 / +1
Query: 202 IWADIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDE 381
IW++IMRFF+NPRKP+ILALARPDPKKNITTLVKAFGE R LR LANLTLIMGNRD IDE
Sbjct: 217 IWSEIMRFFTNPRKPVILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDE 396
Query: 382 M 384
M
Sbjct: 397 M 399
Score = 84.0 bits (177), Expect(2) = 8e-023
Identities = 34/64 (53%), Positives = 45/64 (70%)
Frame = -3 / -1
Query: 384 HFINDITIPHDQCKIC*ISQFTMFTKCFD*SSDILLRIRTSKSKNHWLPGV*EEAHYISP 205
HFIN I++ H+ CK+ +S+ T F+KCF S D+LLRI + KSK H L V +E HY+ P
Sbjct: 399 HFINSISVTHN*CKVSKLSKRTAFSKCFHQSCDVLLRIWSGKSKYHRLARVCKEPHYLRP 220
Query: 204 NRWI 193
NRWI
Sbjct: 219 NRWI 208
Score = 73.5 bits (154), Expect(2) = 2e-044
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = +1 / +1
Query: 10 DGFDLTMARKLRARIRRGVSCFGRXXXXMIAIPPGMEFSHIAPHDVDL 153
DGFD + RK+RARIRR VSC+GR + IPPGMEF HI P D D+
Sbjct: 22 DGFDPVLERKIRARIRRNVSCYGRYMPRVAVIPPGMEFHHIVPLDGDI 165
Score = 44.1 bits (90), Expect(2) = 8e-023
Identities = 24/45 (53%), Positives = 26/45 (57%)
Frame = -1 / -2
Query: 137 GAI*LNSMPGGIAIIXXXXRPKQLTPRLILALSFRAIVRSKPSSR 3
G I* NS+PGGI P QLT RLILA R+ SKPS R
Sbjct: 149 GTI*WNSIPGGITATRGMYLP*QLTLRLILARILRSNTGSKPSYR 15
>gb|CB893717.1|CB893717 EST646509 HOGA Medicago truncatula cDNA clone HOGA-28F4, mRNA
sequence
Length = 843
Score = 112 bits (239), Expect = 6e-024
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = +1 / +1
Query: 478 QSEVPDIYRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXIHRVLDNGI 657
QS+VPDIYR +A+TKGVFIN ALVEPFGLTLIE A+GLPM T+NGGPV IHR L+NG+
Sbjct: 1 QSDVPDIYRYSAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHRALNNGL 180
>gb|AC151822.29| Medicago truncatula clone mth2-32h21, complete sequence
Length = 118094
Score = 65.7 bits (137), Expect(2) = 2e-021
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +1 / -3
Query: 223 FFSNPRKPMILALARPDPKKNITTLVKAFGEHRELRNLANLTLIMGNRDVIDEMSSTNAA 402
+ N RKP+I ++AR D KNIT LV+ +G+++ LR+L NL ++ G D + A
Sbjct: 74049 YLENRRKPIIFSMARLDVVKNITGLVEWYGKNKRLRSLVNLVIVGGFFDPLKSKDREEMA 73870
Query: 403 VLTSALKLIDKYDLYGQ 453
+ LI+KY L GQ
Sbjct: 73869 EIRKMHDLIEKYQLKGQ 73819
Score = 57.4 bits (119), Expect(2) = 2e-021
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +1 / -3
Query: 493 DIYRLAARTKGVFINCALVEPFGLTLIEXXAYGLPMXXTRNGGPVXI 633
++YR A TKG F+ AL E FGLT+IE GLP T +GGP I
Sbjct: 73776 ELYRFIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNHGGPAEI 73636
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 606,162,499
Number of Sequences: 392609
Number of extensions: 7679468
Number of successful extensions: 31626
Number of sequences better than 1.0e-020: 11
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 21805515985
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)