TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW685617.2|AW685617 NF032D02NR1F1000 Nodulated root Medi... 219 5e-056
gb|CA917517.1|CA917517 EST641664 GPOD Medicago truncatula c... 219 5e-056
gb|CX533540.1|CX533540 s13dNF0GE10MJ071_320234 Methyl Jasmo... 219 5e-056
gb|AL389480.1|AL389480 MtBC55B04F1 MtBC Medicago truncatula... 166 3e-040
gb|CX527586.1|CX527586 s13dNF45B12AT101_515684 Aphid-Infect... 122 1e-039
gb|BG644440.1|BG644440 EST506059 KV3 Medicago truncatula cD... 98 5e-039
gb|AW329498.2|AW329498 N200741e rootphos(-) Medicago trunca... 98 5e-039
gb|AL382730.1|AL382730 MtBC09F06F1 MtBC Medicago truncatula... 160 2e-038
gb|AC122169.24| Medicago truncatula clone mth2-9m5, complet... 114 6e-038
gb|AC149307.17| Medicago truncatula clone mth2-91a15, compl... 123 7e-038
gb|BF003733.1|BF003733 EST432231 KV1 Medicago truncatula cD... 100 2e-037
gb|AC174326.4| Medicago truncatula clone mth2-107i14, WORKI... 123 3e-037
gb|BG645576.1|BG645576 EST507195 KV3 Medicago truncatula cD... 98 5e-036
gb|BE248444.2|BE248444 NF021D09DT1F1075 Drought Medicago tr... 150 2e-035
gb|BF646089.1|BF646089 NF065F11EC1F1094 Elicited cell cultu... 98 2e-034
gb|AI974413.1|AI974413 T110359e KV0 Medicago truncatula cDN... 143 4e-033
gb|AW685298.1|AW685298 NF026H01NR1F1000 Nodulated root Medi... 98 4e-031
gb|BG447699.1|BG447699 NF065E10EC1F1082 Elicited cell cultu... 98 1e-028
gb|CX528594.1|CX528594 s13dNF03B06MJ045_243261 Methyl Jasmo... 68 1e-023
gb|DW018654.1|DW018654 EST1227615 MTY Medicago truncatula c... 111 2e-023
gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone m... 93 6e-023
gb|DW016928.1|DW016928 EST1225889 MTY Medicago truncatula c... 73 2e-022
gb|BG644951.1|BG644951 EST506570 KV3 Medicago truncatula cD... 104 1e-021
>gb|AW685617.2|AW685617 NF032D02NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF032D02NR 5', mRNA sequence
Length = 573
Score = 219 bits (472), Expect = 5e-056
Identities = 92/132 (69%), Positives = 109/132 (82%)
Frame = +2 / +2
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISS+ +Q+
Sbjct: 53 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQT 232
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLK 676
HSMSGNGA AFD EYARWLEEHNRQ +ELRA +++HA D +LR++VD M+ +++I+RLK
Sbjct: 233 HSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLK 412
Query: 677 GNAAKADVFHVL 712
G AAKADVFH+L
Sbjct: 413 GVAAKADVFHIL 448
>gb|CA917517.1|CA917517 EST641664 GPOD Medicago truncatula cDNA clone GPOD-36M14, mRNA
sequence
Length = 743
Score = 219 bits (472), Expect = 5e-056
Identities = 92/132 (69%), Positives = 109/132 (82%)
Frame = +2 / +3
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISS+ +Q+
Sbjct: 132 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQT 311
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLK 676
HSMSGNGA AFD EYARWLEEHNRQ +ELRA +++HA D +LR++VD M+ +++I+RLK
Sbjct: 312 HSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLK 491
Query: 677 GNAAKADVFHVL 712
G AAKADVFH+L
Sbjct: 492 GVAAKADVFHIL 527
>gb|CX533540.1|CX533540 s13dNF0GE10MJ071_320234 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 625
Score = 219 bits (472), Expect = 5e-056
Identities = 92/132 (69%), Positives = 109/132 (82%)
Frame = +2 / +2
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISS+ +Q+
Sbjct: 80 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQT 259
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLK 676
HSMSGNGA AFD EYARWLEEHNRQ +ELRA +++HA D +LR++VD M+ +++I+RLK
Sbjct: 260 HSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLK 439
Query: 677 GNAAKADVFHVL 712
G AAKADVFH+L
Sbjct: 440 GVAAKADVFHIL 475
>gb|AL389480.1|AL389480 MtBC55B04F1 MtBC Medicago truncatula cDNA clone MtBC55B04 T3, mRNA
sequence
Length = 405
Score = 166 bits (358), Expect = 3e-040
Identities = 68/108 (62%), Positives = 85/108 (78%)
Frame = +2 / +3
Query: 389 YVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHSMSGNGASAFDMEYARWLEEHNR 568
YVQQLE+SRLKLT GIFISS+ +Q+HSMSGNGA AFD EYARWLEEHNR
Sbjct: 3 YVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNR 182
Query: 569 QISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKADVFHVL 712
Q +ELRA +++HA D +LR++VD M+ +++I+RLKG AAKADVFH+L
Sbjct: 183 QTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHIL 326
>gb|CX527586.1|CX527586 s13dNF45B12AT101_515684 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 636
Score = 122 bits (260), Expect(2) = 1e-039
Identities = 46/69 (66%), Positives = 59/69 (85%)
Frame = +2 / +1
Query: 506 SGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNA 685
SGNGA AFD EYARWLEEHNRQ +ELRA +++HA D +LR++VD M+ +++I+RLKG A
Sbjct: 160 SGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVA 339
Query: 686 AKADVFHVL 712
AKADVFH+L
Sbjct: 340 AKADVFHIL 366
Score = 62.9 bits (131), Expect(2) = 1e-039
Identities = 29/47 (61%), Positives = 34/47 (72%)
Frame = +2 / +2
Query: 365 KSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHSM 505
KSRLRKKAYVQQLE+SRLKLT GIFISS+ +Q+HS+
Sbjct: 20 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSI 160
>gb|BG644440.1|BG644440 EST506059 KV3 Medicago truncatula cDNA clone pKV3-37E6 5' end, mRNA
sequence
Length = 649
Score = 97.7 bits (207), Expect(2) = 5e-039
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +1
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+G + FDMEY RWLEE NR ++ELR G+ A +D ++R +VD + HYD+IFRLKG AK
Sbjct: 208 SGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAK 387
Query: 692 ADVFHVL 712
+DVFH++
Sbjct: 388 SDVFHLI 408
Score = 84.9 bits (179), Expect(2) = 5e-039
Identities = 41/68 (60%), Positives = 46/68 (67%)
Frame = +2 / +1
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
D KTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT G+F+ S
Sbjct: 16 DAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVG 195
Query: 497 HSMSGNGA 520
++S GA
Sbjct: 196 GNISSGGA 219
>gb|AW329498.2|AW329498 N200741e rootphos(-) Medicago truncatula cDNA clone MHRP-20G9, mRNA
sequence
Length = 565
Score = 97.7 bits (207), Expect(2) = 5e-039
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +2
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+G + FDMEY RWLEE NR ++ELR G+ A +D ++R +VD + HYD+IFRLKG AK
Sbjct: 230 SGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAK 409
Query: 692 ADVFHVL 712
+DVFH++
Sbjct: 410 SDVFHLI 430
Score = 84.9 bits (179), Expect(2) = 5e-039
Identities = 41/68 (60%), Positives = 46/68 (67%)
Frame = +2 / +2
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
D KTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT G+F+ S
Sbjct: 38 DAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVG 217
Query: 497 HSMSGNGA 520
++S GA
Sbjct: 218 GNISSGGA 241
>gb|AL382730.1|AL382730 MtBC09F06F1 MtBC Medicago truncatula cDNA clone MtBC09F06 T3, mRNA
sequence
Length = 367
Score = 160 bits (345), Expect = 2e-038
Identities = 66/107 (61%), Positives = 83/107 (77%)
Frame = +2 / +1
Query: 392 VQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHSMSGNGASAFDMEYARWLEEHNRQ 571
VQQLE+SRLKLT GIFISS+ +Q+HSMSGNGA AFD YARWLEEHNRQ
Sbjct: 1 VQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAXYARWLEEHNRQ 180
Query: 572 ISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKADVFHVL 712
+ELRA +++HA D +LR++VD M+ +++I+RLKG AAKADVFH+L
Sbjct: 181 TNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHIL 321
>gb|AC122169.24| Medicago truncatula clone mth2-9m5, complete sequence
Length = 125652
Score = 114 bits (244), Expect(4) = 6e-038
Identities = 43/66 (65%), Positives = 56/66 (84%)
Frame = +2 / +1
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKA 694
GA AFD EYARWLEEHNRQ +ELRA +++HA D +LR++VD M+ +++I+RLKG AAKA
Sbjct: 64498 GAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKA 64677
Query: 695 DVFHVL 712
DVFH+L
Sbjct: 64678 DVFHIL 64695
Score = 47.3 bits (97), Expect(4) = 6e-038
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +2 / +2
Query: 323 KTLRRLAQNREAARKSRLRKKAY 391
+TLRRLAQNREAARKSRLRKK +
Sbjct: 63380 QTLRRLAQNREAARKSRLRKKVH 63448
Score = 41.8 bits (85), Expect(4) = 6e-038
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +1 / +1
Query: 385 GICSTVGE*QAKTYPTRARAAKSSSAGHF 471
GIC+T+ E QA+T PTRARA S+ AG F
Sbjct: 63544 GICATIREQQAETDPTRARATASTPAGLF 63630
Score = 36.3 bits (73), Expect(4) = 6e-038
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2 / +1
Query: 464 GIFISSSVDQSHSMSGNG 517
GIFISS+ +Q+HSMSGNG
Sbjct: 63742 GIFISSTGEQTHSMSGNG 63795
>gb|AC149307.17| Medicago truncatula clone mth2-91a15, complete sequence
Length = 136553
Score = 123 bits (264), Expect(4) = 7e-038
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = +2 / +2
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+GA FD EYARWLEE NRQI+ELRA V++HASDT+LR +VD I++HYDEIFRLKG AAK
Sbjct: 3647 SGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGIVAHYDEIFRLKGVAAK 3826
Query: 692 ADVFHVL 712
ADVFH+L
Sbjct: 3827 ADVFHLL 3847
Score = 46.0 bits (94), Expect(4) = 7e-038
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2 / +1
Query: 326 TLRRLAQNREAARKSRLRKK 385
TLRRLAQNREAARKSRLRKK
Sbjct: 2038 TLRRLAQNREAARKSRLRKK 2097
Score = 35.9 bits (72), Expect(4) = 7e-038
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2 / +2
Query: 464 GIFISSSVDQSHSMSGNG 517
G+FISSS +Q+HS+SGNG
Sbjct: 3074 GVFISSSGEQTHSLSGNG 3127
Score = 34.5 bits (69), Expect(4) = 7e-038
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 385 GICSTVGE*QAKTYPTRARAAKSSSAG 465
G+C T+G+* + PTRARA+ S + G
Sbjct: 2854 GLCPTIGK*SFEADPTRARASASQATG 2934
>gb|BF003733.1|BF003733 EST432231 KV1 Medicago truncatula cDNA clone pKV1-13D13, mRNA
sequence
Length = 544
Score = 99.6 bits (211), Expect(2) = 2e-037
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +2 / +2
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAKA 694
GA+ FDMEYARWLEE R ++ELRAG+ A D +LR +VD + HYDE+FRLK A K+
Sbjct: 293 GAAMFDMEYARWLEEDQRHMAELRAGLQASLGDNELRVIVDGYLYHYDELFRLKEVAVKS 472
Query: 695 DVFHVL 712
DVFH++
Sbjct: 473 DVFHLI 490
Score = 77.6 bits (163), Expect(2) = 2e-037
Identities = 34/53 (64%), Positives = 40/53 (75%)
Frame = +2 / +2
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFI 475
D KTLRRLAQNREAA+KSRLRKKAYVQQLE+SRL+L+ G+F+
Sbjct: 107 DPKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLRLSSLEQDLQRARSQGLFL 265
>gb|AC174326.4| Medicago truncatula clone mth2-107i14, WORKING DRAFT SEQUENCE, 25
unordered pieces
Length = 221159
Score = 123 bits (264), Expect(4) = 3e-037
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = +2 / -2
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+GA FD EYARWLEE NRQI+ELRA V++HASDT+LR +VD I++HYDEIFRLKG AAK
Sbjct: 203359 SGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIVDGIVAHYDEIFRLKGVAAK 203180
Query: 692 ADVFHVL 712
ADVFH+L
Sbjct: 203179 ADVFHLL 203159
Score = 46.0 bits (94), Expect(4) = 3e-037
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2 / -1
Query: 326 TLRRLAQNREAARKSRLRKK 385
TLRRLAQNREAARKSRLRKK
Sbjct: 204968 TLRRLAQNREAARKSRLRKK 204909
Score = 35.9 bits (72), Expect(4) = 3e-037
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2 / -2
Query: 464 GIFISSSVDQSHSMSGNG 517
G+FISSS +Q+HS+SGNG
Sbjct: 203932 GVFISSSGEQTHSLSGNG 203879
Score = 34.5 bits (69), Expect(4) = 3e-037
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1 / -1
Query: 385 GICSTVGE*QAKTYPTRARAAKSSSAG 465
G+C T+G+* + PTRARA+ S + G
Sbjct: 204152 GLCPTIGK*SFEADPTRARASASQATG 204072
>gb|BG645576.1|BG645576 EST507195 KV3 Medicago truncatula cDNA clone pKV3-46P5 5' end, mRNA
sequence
Length = 655
Score = 97.7 bits (207), Expect(2) = 5e-036
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +2
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+G + FDMEY RWLEE NR ++ELR G+ A +D ++R +VD + HYD+IFRLKG AK
Sbjct: 209 SGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAK 388
Query: 692 ADVFHVL 712
+DVFH++
Sbjct: 389 SDVFHLI 409
Score = 74.8 bits (157), Expect(2) = 5e-036
Identities = 38/70 (54%), Positives = 44/70 (62%)
Frame = +2 / +2
Query: 311 HGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVD 490
H Q+ RLAQNREAARKSRLRKKAYVQQLE+SRLKLT G+F+ S
Sbjct: 11 HLMQRH*ERLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGG 190
Query: 491 QSHSMSGNGA 520
++S GA
Sbjct: 191 VGGNISSGGA 220
>gb|BE248444.2|BE248444 NF021D09DT1F1075 Drought Medicago truncatula cDNA clone NF021D09DT
5', mRNA sequence
Length = 469
Score = 150 bits (322), Expect = 2e-035
Identities = 66/85 (77%), Positives = 70/85 (82%)
Frame = +2 / +3
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISS+ +Q+
Sbjct: 171 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQT 350
Query: 497 HSMSGNGASAFDMEYARWLEEHNRQ 571
HSMSGNGA AFD EYARWLEEHNRQ
Sbjct: 351 HSMSGNGAMAFDAEYARWLEEHNRQ 425
>gb|BF646089.1|BF646089 NF065F11EC1F1094 Elicited cell culture Medicago truncatula cDNA
clone NF065F11EC 5', mRNA sequence
Length = 605
Score = 97.7 bits (207), Expect(2) = 2e-034
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +1
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+G + FDMEY RWLEE NR ++ELR G+ A +D ++R +VD + HYD+IFRLKG AK
Sbjct: 172 SGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAK 351
Query: 692 ADVFHVL 712
+DVFH++
Sbjct: 352 SDVFHLI 372
Score = 69.8 bits (146), Expect(2) = 2e-034
Identities = 34/61 (55%), Positives = 39/61 (63%)
Frame = +2 / +1
Query: 338 LAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHSMSGNG 517
L QNREAARKSRLRKKAYVQQLE+SRLKLT G+F+ S ++S G
Sbjct: 1 LXQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVGGNISSGG 180
Query: 518 A 520
A
Sbjct: 181 A 183
>gb|AI974413.1|AI974413 T110359e KV0 Medicago truncatula cDNA clone pKV0-1P3, mRNA sequence
Length = 410
Score = 143 bits (306), Expect = 4e-033
Identities = 55/83 (66%), Positives = 72/83 (86%)
Frame = +2 / +3
Query: 464 GIFISSSVDQSHSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKI 643
GIFISS+ +Q+HSMSGNGA A+D EYARWLEEHNRQ +ELRA +++HA D +LR++VD
Sbjct: 30 GIFISSTGEQTHSMSGNGAMAWDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNF 209
Query: 644 MSHYDEIFRLKGNAAKADVFHVL 712
M+ +++I+RLKG AAKADVFH+L
Sbjct: 210 MTQFEDIYRLKGVAAKADVFHIL 278
>gb|AW685298.1|AW685298 NF026H01NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF026H01NR 5', mRNA sequence
Length = 374
Score = 97.7 bits (207), Expect(2) = 4e-031
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +3
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+G + FDMEY RWLEE NR ++ELR G+ A +D ++R +VD + HYD+IFRLKG AK
Sbjct: 156 SGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAK 335
Query: 692 ADVFHVL 712
+DVFH++
Sbjct: 336 SDVFHLI 356
Score = 58.3 bits (121), Expect(2) = 4e-031
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +2 / +3
Query: 356 AARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHSMSGNGA 520
AARKSRLRKKAYVQQLE+SRLKLT G+F+ S ++S GA
Sbjct: 3 AARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVGGNISSGGA 167
>gb|BG447699.1|BG447699 NF065E10EC1F1082 Elicited cell culture Medicago truncatula cDNA
clone NF065E10EC 5', mRNA sequence
Length = 514
Score = 97.7 bits (207), Expect(3) = 1e-028
Identities = 37/67 (55%), Positives = 51/67 (76%)
Frame = +2 / +3
Query: 512 NGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+G + FDMEY RWLEE NR ++ELR G+ A +D ++R +VD + HYD+IFRLKG AK
Sbjct: 174 SGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAK 353
Query: 692 ADVFHVL 712
+DVFH++
Sbjct: 354 SDVFHLI 374
Score = 42.8 bits (87), Expect(3) = 1e-028
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +2 / +2
Query: 347 NREAARKSRLRKKAYVQQ 400
NREAARKSRLRKKAYVQQ
Sbjct: 11 NREAARKSRLRKKAYVQQ 64
Score = 25.4 bits (49), Expect(3) = 1e-028
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2 / +3
Query: 380 KKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSHSMSGNGA 520
K+ E+SRLKLT G+F+ S ++S GA
Sbjct: 45 KRLMCNNXESSRLKLTQLEQDLQRARSQGMFMDWSGGVGGNISSGGA 185
>gb|CX528594.1|CX528594 s13dNF03B06MJ045_243261 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 630
Score = 68.4 bits (143), Expect(2) = 1e-023
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +2 / +2
Query: 521 SAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFRLKGNAAK 691
+ F MEY W+EE NRQ+ EL+ +SAH+SD + +V+ +M+HY ++F +K +AAK
Sbjct: 458 ATFKMEYEHWVEELNRQMLELKGALSAHSSDIRIGELVNGLMNHYFKLFCMKSDAAK 628
Score = 62.5 bits (130), Expect(2) = 1e-023
Identities = 27/34 (79%), Positives = 31/34 (91%)
Frame = +2 / +2
Query: 323 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKL 424
K RRLAQNREAARKSRL+KKA++QQLE+ RLKL
Sbjct: 251 KMQRRLAQNREAARKSRLKKKAHIQQLESCRLKL 352
>gb|DW018654.1|DW018654 EST1227615 MTY Medicago truncatula cDNA clone MTYB930, mRNA
sequence
Length = 770
Score = 111 bits (236), Expect = 2e-023
Identities = 49/72 (68%), Positives = 56/72 (77%)
Frame = +2 / +3
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQ+TLR+LA NREAARKSRLRKKAYVQQLE+SRLKLT G+FISSS +Q+
Sbjct: 552 DQRTLRKLAHNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGEQT 731
Query: 497 HSMSGNGASAFD 532
HS+SGNGA FD
Sbjct: 732 HSLSGNGAMQFD 767
>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
Length = 154095
Score = 92.7 bits (196), Expect(3) = 6e-023
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2 / +3
Query: 491 QSHSMSGNGASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVVDKIMSHYDEIFR 670
Q M+ + A+ FD+EYARWLEEH+R + ELRA V H + +LR VDK ++ YD++ +
Sbjct: 102759 QIFEMNISEAAMFDVEYARWLEEHHRLVCELRAAVHEHIPENELRMFVDKFLAQYDQVAQ 102938
Query: 671 LKGNAAKADVFHVL 712
LK AKAD+FH++
Sbjct: 102939 LKSLVAKADIFHLV 102980
Score = 43.7 bits (89), Expect(3) = 6e-023
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2 / +1
Query: 329 LRRLAQNREAARKSRLRKK 385
LRRLAQNREAARKSRLRKK
Sbjct: 102253 LRRLAQNREAARKSRLRKK 102309
Score = 28.1 bits (55), Expect(3) = 6e-023
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +2 / +2
Query: 383 KAYVQQLENSRLKL 424
+AY+QQLE+SR+KL
Sbjct: 102431 QAYIQQLESSRIKL 102472
>gb|DW016928.1|DW016928 EST1225889 MTY Medicago truncatula cDNA clone MTYAN37, mRNA
sequence
Length = 794
Score = 72.5 bits (152), Expect(2) = 2e-022
Identities = 33/59 (55%), Positives = 40/59 (67%)
Frame = +2 / +2
Query: 323 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQSH 499
K RRLAQNREAARKSRLRKKAYVQQLE+SRLKL G+++ +D ++
Sbjct: 470 KIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMGGGLDSNN 646
Score = 54.7 bits (113), Expect(2) = 2e-022
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = +2 / +2
Query: 515 GASAFDMEYARWLEEHNRQISELRAGVSAHASDTDLRSVV 634
G +AF MEY W++E NRQISE+R +++H SD +L +V
Sbjct: 674 GIAAFGMEYGHWVDEQNRQISEMRNALNSHISDIELTMLV 793
>gb|BG644951.1|BG644951 EST506570 KV3 Medicago truncatula cDNA clone pKV3-38F24 5' end,
mRNA sequence
Length = 774
Score = 104 bits (222), Expect = 1e-021
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +2 / +3
Query: 317 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTXXXXXXXXXXXXGIFISSSVDQS 496
DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT GIFISS+ +Q+
Sbjct: 567 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQT 746
Query: 497 HSMSG 511
HSMSG
Sbjct: 747 HSMSG 761
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 563,099,109
Number of Sequences: 392609
Number of extensions: 6937707
Number of successful extensions: 31352
Number of sequences better than 1.0e-020: 27
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 23065950435
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)