TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW775842.1|AW775842 EST334907 DSIL Medicago truncatula c... 106 3e-033
gb|BF649665.1|BF649665 NF081H11EC1F1094 Elicited cell cultu... 106 3e-033
gb|CX535226.1|CX535226 s13dNF95H11MJ096_388629 Methyl Jasmo... 106 3e-033
gb|BI309356.1|BI309356 EST530766 GPOD Medicago truncatula c... 107 6e-031
gb|BE204353.1|BE204353 EST397029 KV0 Medicago truncatula cD... 105 2e-030
gb|BG645286.1|BG645286 EST506905 KV3 Medicago truncatula cD... 105 3e-030
gb|CX532800.1|CX532800 s13dNF71G05MJ036_271883 Methyl Jasmo... 93 6e-027
gb|AW774873.1|AW774873 EST334024 KV3 Medicago truncatula cD... 85 8e-027
gb|BE204680.1|BE204680 EST397356 KV0 Medicago truncatula cD... 87 9e-025
gb|AW774625.1|AW774625 EST333776 KV3 Medicago truncatula cD... 106 3e-024
gb|BI273174.1|BI273174 NF091B12FL1F1096 Developing flower M... 106 3e-022
>gb|AW775842.1|AW775842 EST334907 DSIL Medicago truncatula cDNA clone pDSIL-3E8, mRNA
sequence
Length = 654
Score = 106 bits (227), Expect(2) = 3e-033
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF + +L P Y FT L+P A S+N+N ++
Sbjct: 208 SLVEFVFTNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSL 387
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W MYF +LLP GDDGNYA S +Y +VA
Sbjct: 388 WKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 525
Score = 56.5 bits (117), Expect(2) = 3e-033
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1 / +1
Query: 196 SLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
+LDTVR+ L R+EDTIVF LIER+K+P N YD
Sbjct: 73 TLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYD 174
>gb|BF649665.1|BF649665 NF081H11EC1F1094 Elicited cell culture Medicago truncatula cDNA
clone NF081H11EC 5', mRNA sequence
Length = 605
Score = 106 bits (227), Expect(2) = 3e-033
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF + +L P Y FT L+P A S+N+N ++
Sbjct: 173 SLVEFVFTNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSL 352
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W MYF +LLP GDDGNYA S +Y +VA
Sbjct: 353 WKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 490
Score = 56.5 bits (117), Expect(2) = 3e-033
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1 / +2
Query: 196 SLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
+LDTVR+ L R+EDTIVF LIER+K+P N YD
Sbjct: 38 TLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYD 139
>gb|CX535226.1|CX535226 s13dNF95H11MJ096_388629 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 561
Score = 106 bits (227), Expect(2) = 3e-033
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +1 / +3
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF + +L P Y FT L+P A S+N+N ++
Sbjct: 234 SLVEFVFTNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSL 413
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W MYF +LLP GDDGNYA S +Y +VA
Sbjct: 414 WKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 551
Score = 56.5 bits (117), Expect(2) = 3e-033
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1 / +3
Query: 196 SLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
+LDTVR+ L R+EDTIVF LIER+K+P N YD
Sbjct: 99 TLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYD 200
>gb|BI309356.1|BI309356 EST530766 GPOD Medicago truncatula cDNA clone pGPOD-11O18 5' end,
mRNA sequence
Length = 567
Score = 107 bits (228), Expect(2) = 6e-031
Identities = 44/108 (40%), Positives = 61/108 (56%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + +K GRY+S E PFF +P L PP + L+P A S+N+ND
Sbjct: 153 HGSLVEYMVRETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININD 332
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
+WS+YF L+P+L K GDDGNY S +Y +VA
Sbjct: 333 NVWSVYFRVLIPQLVKEGDDGNYGSSAVCDVMCLQALSKRIHYGKFVA 476
Score = 48.3 bits (99), Expect(2) = 6e-031
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+LD +R L R+ED+I++ L+ERA+Y N YDP
Sbjct: 21 LTLDHIRSSLIRQEDSIIYCLLERAQYCYNEDTYDP 128
>gb|BE204353.1|BE204353 EST397029 KV0 Medicago truncatula cDNA clone pKV0-15B16, mRNA
sequence
Length = 657
Score = 105 bits (224), Expect(2) = 2e-030
Identities = 43/107 (40%), Positives = 60/107 (56%)
Frame = +1 / +2
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + +K GRY+S E PFF +P L PP + L+P A S+N+ND
Sbjct: 335 HGSLVEYMVRETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININD 514
Query: 508 AIWSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYV 648
+WS+YF L+P+L K GDDGNY S +Y +V
Sbjct: 515 NVWSVYFRVLIPQLVKEGDDGNYGSSAVCDVMCLQALSKRIHYGKFV 655
Score = 48.3 bits (99), Expect(2) = 2e-030
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1 / +2
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+LD +R L R+ED+I++ L+ERA+Y N YDP
Sbjct: 203 LTLDHIRSSLIRQEDSIIYCLLERAQYCYNEDTYDP 310
>gb|BG645286.1|BG645286 EST506905 KV3 Medicago truncatula cDNA clone pKV3-39D20 5' end,
mRNA sequence
Length = 749
Score = 105 bits (223), Expect(2) = 3e-030
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + +K GRY+S E PFF +P L PP + L+P A S+N+ND
Sbjct: 342 HGSLVEYMVRETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININD 521
Query: 508 AIWSMYFDELLPRLXKXGDDGNY 576
+WS+YF L+P+L K GDDGNY
Sbjct: 522 NVWSVYFRVLIPQLVKEGDDGNY 590
Score = 48.3 bits (99), Expect(2) = 3e-030
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+LD +R L R+ED+I++ L+ERA+Y N YDP
Sbjct: 210 LTLDHIRSSLIRQEDSIIYCLLERAQYCYNEDTYDP 317
>gb|CX532800.1|CX532800 s13dNF71G05MJ036_271883 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 666
Score = 93.2 bits (197), Expect(2) = 6e-027
Identities = 37/91 (40%), Positives = 51/91 (56%)
Frame = +1 / +3
Query: 379 KAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAIWSMYFDELLPRLXKX 558
+AGRY++ +E PFF + +L P Y FT L+P A S+N+N ++W MYF +LLP
Sbjct: 171 QAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHDLLPLFVAS 350
Query: 559 GDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
GDDGNYA S +Y +VA
Sbjct: 351 GDDGNYAQTAASDLSLLQAISKRVHYGKFVA 443
Score = 49.2 bits (101), Expect(2) = 6e-027
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 208 VRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
VR+ L R+EDTIVF LIER+K+P N YD
Sbjct: 9 VRETLVRQEDTIVFGLIERSKFPFNSQTYD 98
>gb|AW774873.1|AW774873 EST334024 KV3 Medicago truncatula cDNA clone pKV3-24O7, mRNA
sequence
Length = 394
Score = 85.4 bits (180), Expect(2) = 8e-027
Identities = 33/70 (47%), Positives = 46/70 (65%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF + +L P Y FT L+P A S+N+N ++
Sbjct: 179 SLVEFVFTNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSL 358
Query: 514 WSMYFDELLP 543
W MYF +LLP
Sbjct: 359 WKMYFHDLLP 388
Score = 56.5 bits (117), Expect(2) = 8e-027
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1 / +2
Query: 196 SLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
+LDTVR+ L R+EDTIVF LIER+K+P N YD
Sbjct: 44 TLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYD 145
>gb|BE204680.1|BE204680 EST397356 KV0 Medicago truncatula cDNA clone pKV0-17G21, mRNA
sequence
Length = 565
Score = 86.8 bits (183), Expect(2) = 9e-025
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +1 / +3
Query: 328 NASFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVND 507
+ S VE +RE+E + +K GRY+S E PFF +P L PP + L+P A S+N+ND
Sbjct: 342 HGSLVEYMVRETEKLHAKVGRYKSPDEHPFFPTGLPEQLLPPLQYPQVLHPIAESININD 521
Query: 508 AIWSMYFDELLPRL 549
+WS+YF L+P+L
Sbjct: 522 NVWSVYFRVLIPQL 563
Score = 48.3 bits (99), Expect(2) = 9e-025
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1 / +3
Query: 193 LSLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYDP 300
L+LD +R L R+ED+I++ L+ERA+Y N YDP
Sbjct: 210 LTLDHIRSSLIRQEDSIIYCLLERAQYCYNEDTYDP 317
>gb|AW774625.1|AW774625 EST333776 KV3 Medicago truncatula cDNA clone pKV3-23M13, mRNA
sequence
Length = 648
Score = 106 bits (227), Expect(2) = 3e-024
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF + +L P Y FT L+P A S+N+N ++
Sbjct: 82 SLVEFVFTNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSL 261
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W MYF +LLP GDDGNYA S +Y +VA
Sbjct: 262 WKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 399
Score = 26.3 bits (51), Expect(2) = 3e-024
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1 / +1
Query: 253 LIERAKYPLNRPAYD 297
LIER+K+P N YD
Sbjct: 4 LIERSKFPFNSQTYD 48
>gb|BI273174.1|BI273174 NF091B12FL1F1096 Developing flower Medicago truncatula cDNA clone
NF091B12FL 5', mRNA sequence
Length = 696
Score = 106 bits (227), Expect = 3e-022
Identities = 44/106 (41%), Positives = 59/106 (55%)
Frame = +1 / +2
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF + +L P Y FT L+P A S+N+N ++
Sbjct: 32 SLVEFVFTNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSL 211
Query: 514 WSMYFDELLPRLXKXGDDGNYAVXXXXXXXXXXXXSXXXNYXXYVA 651
W MYF +LLP GDDGNYA S +Y +VA
Sbjct: 212 WKMYFHDLLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVA 349
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 431,908,649
Number of Sequences: 392609
Number of extensions: 4193336
Number of successful extensions: 22802
Number of sequences better than 1.0e-020: 13
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 25460775890
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)