TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBE1h10.xg.2.1
(463 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ499956.1|AJ499956 AJ499956 MTGIM Medicago truncatula c... 117 7e-027
gb|CA921732.1|CA921732 EST639450 MTUS Medicago truncatula c... 115 6e-025
gb|BG648501.1|BG648501 EST510120 HOGA Medicago truncatula c... 115 6e-025
gb|AW773958.1|AW773958 EST332944 KV3 Medicago truncatula cD... 106 8e-025
gb|AL376031.1|AL376031 MtBB20G08F1 MtBB Medicago truncatula... 102 1e-023
gb|AL371441.1|AL371441 MtBA44C02R1 MtBA Medicago truncatula... 106 2e-022
gb|AL387258.1|AL387258 MtBC41D05R1 MtBC Medicago truncatula... 106 2e-022
gb|AL376032.1|AL376032 MtBB20G08R1 MtBB Medicago truncatula... 106 2e-022
gb|AL375635.1|AL375635 MtBB16A02R2 MtBB Medicago truncatula... 103 2e-021
>gb|AJ499956.1|AJ499956 AJ499956 MTGIM Medicago truncatula cDNA clone mtgmacc120010g01,
mRNA sequence
Length = 564
Score = 117 bits (251), Expect(2) = 7e-027
Identities = 49/102 (48%), Positives = 65/102 (63%)
Frame = +2 / -2
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCIL 247
K VL C+D ++ L+ D T+ F+D DI ++LRSLID S VESFG GK CI
Sbjct: 431 KNLVLFCSDQSRSSLNKDNDMTTYGTFIDVDILHEKLSLRSLIDHSVVESFGGEGKACIT 252
Query: 248 SRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMNG 373
SRVYP++A+ A +Y FNNG +V + L+AW MKK +NG
Sbjct: 251 SRVYPTLAINDKALIYAFNNGTTNVKITRLSAWSMKKAQLNG 126
Score = 23.1 bits (44), Expect(2) = 7e-027
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2 / -2
Query: 5 ASEDLQERXXXFFRVF 52
AS+ LQE FFR+F
Sbjct: 491 ASKGLQEFTSVFFRIF 444
>gb|CA921732.1|CA921732 EST639450 MTUS Medicago truncatula cDNA clone MTUS-43G7, mRNA
sequence
Length = 767
Score = 115 bits (245), Expect = 6e-025
Identities = 48/95 (50%), Positives = 60/95 (63%)
Frame = +2 / -3
Query: 74 KVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSR 253
K LM +D T+ L D+ K ++ D D + I+LRSLIDRS +ESFG GG+ CI SR
Sbjct: 465 KCLMISDQTRSSLREDVEKTSYATIFDIDPNLKTISLRSLIDRSIIESFGDGGRACITSR 286
Query: 254 VYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKK 358
YP A KDAHL+VFN+G V S L AW MK+
Sbjct: 285 AYPLFATDKDAHLFVFNDGSQSVVISQLNAWSMKQ 181
>gb|BG648501.1|BG648501 EST510120 HOGA Medicago truncatula cDNA clone pHOGA-19P18 5' end,
mRNA sequence
Length = 451
Score = 115 bits (245), Expect = 6e-025
Identities = 48/95 (50%), Positives = 60/95 (63%)
Frame = +2 / +3
Query: 74 KVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSR 253
K LM +D T+ L D+ K ++ D D + I+LRSLIDRS +ESFG GG+ CI SR
Sbjct: 42 KCLMISDQTRSSLREDVEKTSYATIFDIDPNLKTISLRSLIDRSIIESFGDGGRACITSR 221
Query: 254 VYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKK 358
YP A KDAHL+VFN+G V S L AW MK+
Sbjct: 222 AYPLFATDKDAHLFVFNDGSQSVVISQLNAWSMKQ 326
>gb|AW773958.1|AW773958 EST332944 KV3 Medicago truncatula cDNA clone pKV3-16N9, mRNA
sequence
Length = 634
Score = 106 bits (227), Expect(2) = 8e-025
Identities = 46/101 (45%), Positives = 62/101 (61%)
Frame = +2 / -1
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCIL 247
K VLMC+D ++ L+ + T+ FVD D ++LR+LID S VESFG G+ CI
Sbjct: 442 KNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACIT 263
Query: 248 SRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
+RVYP++A+ A LY FNNG V + L AW MKK +N
Sbjct: 262 ARVYPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKKAKIN 140
Score = 27.2 bits (53), Expect(2) = 8e-025
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2 / -1
Query: 5 ASEDLQERXXXFFRVFRDGH 64
AS+ LQE FFR+FR H
Sbjct: 502 ASKGLQEYTAVFFRIFRYQH 443
>gb|AL376031.1|AL376031 MtBB20G08F1 MtBB Medicago truncatula cDNA clone MtBB20G08 T3, mRNA
sequence
Length = 498
Score = 102 bits (217), Expect(2) = 1e-023
Identities = 44/97 (45%), Positives = 59/97 (60%)
Frame = +2 / +1
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCIL 247
K VLMC+D ++ L+ + T+ FVD D ++LR+LID S VES G G+ CI
Sbjct: 202 KNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESLGGEGRACIT 381
Query: 248 SRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKK 358
+RVYP++A+ A LY FNNG V + L AW MKK
Sbjct: 382 ARVYPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKK 492
Score = 27.2 bits (53), Expect(2) = 1e-023
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2 / +1
Query: 5 ASEDLQERXXXFFRVFRDGH 64
AS+ LQE FFR+FR H
Sbjct: 142 ASKGLQEYTAVFFRIFRYQH 201
>gb|AL371441.1|AL371441 MtBA44C02R1 MtBA Medicago truncatula cDNA clone MtBA44C02 T7, mRNA
sequence
Length = 528
Score = 106 bits (227), Expect = 2e-022
Identities = 46/101 (45%), Positives = 62/101 (61%)
Frame = +2 / +1
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCIL 247
K VLMC+D ++ L+ + T+ FVD D ++LR+LID S VESFG G+ CI
Sbjct: 19 KNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACIT 198
Query: 248 SRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
+RVYP++A+ A LY FNNG V + L AW MKK +N
Sbjct: 199 ARVYPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKKAKIN 321
>gb|AL387258.1|AL387258 MtBC41D05R1 MtBC Medicago truncatula cDNA clone MtBC41D05 T7, mRNA
sequence
Length = 549
Score = 106 bits (227), Expect = 2e-022
Identities = 46/101 (45%), Positives = 62/101 (61%)
Frame = +2 / +2
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCIL 247
K VLMC+D ++ L+ + T+ FVD D ++LR+LID S VESFG G+ CI
Sbjct: 35 KNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACIT 214
Query: 248 SRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
+RVYP++A+ A LY FNNG V + L AW MKK +N
Sbjct: 215 ARVYPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKKAKIN 337
>gb|AL376032.1|AL376032 MtBB20G08R1 MtBB Medicago truncatula cDNA clone MtBB20G08 T7, mRNA
sequence
Length = 495
Score = 106 bits (226), Expect = 2e-022
Identities = 45/98 (45%), Positives = 61/98 (62%)
Frame = +2 / +3
Query: 77 VLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCILSRV 256
VLMC+D ++ L+ + T+ FVD D ++LR+LID S VESFG G+ CI +RV
Sbjct: 9 VLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACITARV 188
Query: 257 YPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
YP++A+ A LY FNNG V + L AW MKK +N
Sbjct: 189 YPTLAIHDKALLYAFNNGNSAVKITRLNAWSMKKAKIN 302
>gb|AL375635.1|AL375635 MtBB16A02R2 MtBB Medicago truncatula cDNA clone MtBB16A02 T7, mRNA
sequence
Length = 544
Score = 103 bits (219), Expect = 2e-021
Identities = 45/101 (44%), Positives = 61/101 (60%)
Frame = +2 / +3
Query: 68 KPKVLMCTDPTKXXLSPDLYKPTFXXFVDADISXXXITLRSLIDRSXVESFGAGGKTCIL 247
K VLMC+D ++ L+ + T+ FVD D ++LR+LID S VESFG G+ CI
Sbjct: 30 KNLVLMCSDQSRSSLNKENDMTTYGTFVDVDPLHEKLSLRTLIDHSVVESFGGEGRACIT 209
Query: 248 SRVYPSIAVGKDAHLYVFNNGEXDVTXSGLTAWEMKKPLMN 370
+RVYP++A+ A Y FNNG V + L AW MKK +N
Sbjct: 210 ARVYPTLAIHDKAL*YAFNNGNSAVKITRLNAWSMKKAKIN 332
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 239,166,794
Number of Sequences: 392609
Number of extensions: 1798201
Number of successful extensions: 18388
Number of sequences better than 1.0e-020: 9
length of database: 147,244,331
effective HSP length: 52
effective length of database: 126,828,663
effective search space used: 12809694963
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)