TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC161033.18| Medicago truncatula clone mth2-57g13, compl... 80 9e-042
gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-... 80 1e-040
gb|AC152158.10| Medicago truncatula clone mth2-139g10, comp... 80 2e-040
>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence
Length = 109039
Score = 79.9 bits (168), Expect(6) = 9e-042
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +1 / +1
Query: 529 IGIARCFTYGGSKNSALHDPRILPRDSLSKEKYMSKEEKQT 651
+GIARCFT+GGSK ALHDP ILPR LSKEKYM+KEE+ T
Sbjct: 17947 LGIARCFTFGGSKKRALHDPAILPRSDLSKEKYMNKEEQTT 18069
Score = 56.1 bits (116), Expect(6) = 9e-042
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +1 / +3
Query: 706 EAGKRRAEKRHRFMEEFVAEFYEEWSGRA* 795
+AG+RRAE+RH+FM EFV EFY+EW+G +*
Sbjct: 18321 QAGQRRAERRHKFMVEFVKEFYDEWNGSS* 18410
Score = 56.1 bits (116), Expect(6) = 9e-042
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1 / +1
Query: 433 GFKNEVSNKSIVEPTLEFAIVQDADRLDAIGAIGI 537
GFK EV+ K E + EF +VQDADRLDAIGAIGI
Sbjct: 17695 GFKEEVTGKGTTEWSPEFGVVQDADRLDAIGAIGI 17799
Score = 51.0 bits (105), Expect(6) = 9e-042
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1 / +1
Query: 637 EEKQTSINHFHEKLFKLKDMMKTE 708
+E+QT+INHFHEKL KLKDMMKT+
Sbjct: 18052 KEEQTTINHFHEKLLKLKDMMKTK 18123
Score = 34.1 bits (68), Expect(6) = 9e-042
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1 / +2
Query: 178 GRDASHDAAHALRVRD 225
G DASHDAAH RVRD
Sbjct: 16718 GNDASHDAAHVWRVRD 16765
Score = 27.2 bits (53), Expect(6) = 9e-042
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = +1 / +3
Query: 283 VELAALLHDVGD 318
VELAALLHD+G+
Sbjct: 16914 VELAALLHDIGN 16949
>gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-57g13, *** SEQUENCING IN
PROGRESS ***, 21 unordered pieces
Length = 127685
Score = 79.9 bits (168), Expect(5) = 1e-040
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +1 / -1
Query: 529 IGIARCFTYGGSKNSALHDPRILPRDSLSKEKYMSKEEKQT 651
+GIARCFT+GGSK ALHDP ILPR LSKEKYM+KEE+ T
Sbjct: 2318 LGIARCFTFGGSKKRALHDPAILPRSDLSKEKYMNKEEQTT 2196
Score = 56.1 bits (116), Expect(5) = 1e-040
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +1 / -3
Query: 706 EAGKRRAEKRHRFMEEFVAEFYEEWSGRA* 795
+AG+RRAE+RH+FM EFV EFY+EW+G +*
Sbjct: 1944 QAGQRRAERRHKFMVEFVKEFYDEWNGSS* 1855
Score = 56.1 bits (116), Expect(5) = 1e-040
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1 / -1
Query: 433 GFKNEVSNKSIVEPTLEFAIVQDADRLDAIGAIGI 537
GFK EV+ K E + EF +VQDADRLDAIGAIGI
Sbjct: 2570 GFKEEVTGKGTTEWSPEFGVVQDADRLDAIGAIGI 2466
Score = 51.0 bits (105), Expect(5) = 1e-040
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1 / -1
Query: 637 EEKQTSINHFHEKLFKLKDMMKTE 708
+E+QT+INHFHEKL KLKDMMKT+
Sbjct: 2213 KEEQTTINHFHEKLLKLKDMMKTK 2142
Score = 34.1 bits (68), Expect(5) = 1e-040
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1 / -2
Query: 178 GRDASHDAAHALRVRD 225
G DASHDAAH RVRD
Sbjct: 3547 GNDASHDAAHVWRVRD 3500
>gb|AC152158.10| Medicago truncatula clone mth2-139g10, complete sequence
Length = 140874
Score = 79.9 bits (168), Expect(5) = 2e-040
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +1 / +3
Query: 529 IGIARCFTYGGSKNSALHDPRILPRDSLSKEKYMSKEEKQT 651
+GIARCFT+GGSK ALHDP ILPR LSKEKYM+KEE+ T
Sbjct: 122763 LGIARCFTFGGSKKRALHDPAILPRSDLSKEKYMNKEEQTT 122885
Score = 56.1 bits (116), Expect(5) = 2e-040
Identities = 20/30 (66%), Positives = 27/30 (90%)
Frame = +1 / +2
Query: 706 EAGKRRAEKRHRFMEEFVAEFYEEWSGRA* 795
+AG+RRAE+RH+FM EFV EFY+EW+G +*
Sbjct: 123137 QAGQRRAERRHKFMVEFVKEFYDEWNGSS* 123226
Score = 56.1 bits (116), Expect(5) = 2e-040
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1 / +3
Query: 433 GFKNEVSNKSIVEPTLEFAIVQDADRLDAIGAIGI 537
GFK EV+ K E + EF +VQDADRLDAIGAIGI
Sbjct: 122511 GFKEEVTGKGTTEWSPEFGVVQDADRLDAIGAIGI 122615
Score = 51.0 bits (105), Expect(5) = 2e-040
Identities = 19/24 (79%), Positives = 23/24 (95%)
Frame = +1 / +3
Query: 637 EEKQTSINHFHEKLFKLKDMMKTE 708
+E+QT+INHFHEKL KLKDMMKT+
Sbjct: 122868 KEEQTTINHFHEKLLKLKDMMKTK 122939
Score = 34.1 bits (68), Expect(5) = 2e-040
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1 / +1
Query: 178 GRDASHDAAHALRVRD 225
G DASHDAAH RVRD
Sbjct: 121534 GNDASHDAAHVWRVRD 121581
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,015,447,206
Number of Sequences: 392609
Number of extensions: 14101265
Number of successful extensions: 69889
Number of sequences better than 1.0e-020: 4
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 39203060832
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)