TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAI15h08.yg.2.1
(557 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC170800.5| Medicago truncatula clone mth2-32n7, complet... 121 8e-050
gb|AC141922.19| Medicago truncatula clone mth2-9n11, comple... 121 1e-049
gb|AC144931.28| Medicago truncatula clone mth2-22b18, compl... 121 2e-049
gb|AC142094.12| Medicago truncatula clone mth2-34h6, comple... 121 4e-049
gb|AC174287.2| Medicago truncatula clone mth2-32a8, WORKING... 70 1e-037
gb|CX528763.1|CX528763 s13dNF07F11MJ091_243595 Methyl Jasmo... 100 1e-037
gb|AC160840.20| Medicago truncatula clone mth2-27o21, WORKI... 70 2e-037
emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1... 70 2e-037
gb|AC147538.15| Medicago truncatula clone mth2-135c7, WORKI... 71 4e-028
gb|AC147538.16| Medicago truncatula clone mth2-135c7, WORKI... 71 4e-028
gb|AA660817.1|AA660817 00711 MtRHE Medicago truncatula cDNA... 108 6e-023
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
Length = 99712
Score = 121 bits (259), Expect(5) = 8e-050
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -2 / +1
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSSSHICMLD 119
Y+GG+FDVESLVENLL QLAG+Q ++VNVYDVTN S+PL+MYG++ G+ S H LD
Sbjct: 40267 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 40446
Query: 118 FGDPFRKHHMVCR 80
FGDP+RKH M+CR
Sbjct: 40447 FGDPYRKHQMICR 40485
Score = 53.8 bits (111), Expect(5) = 8e-050
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2 / +3
Query: 469 EEDRENILRSRASGKAVLTRPFRLMSNH 386
+EDRENI+R+RA+GKAVLT PFRL+ +H
Sbjct: 39801 QEDRENIMRARATGKAVLTSPFRLLGSH 39884
Score = 51.9 bits (107), Expect(5) = 8e-050
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2 / +3
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYL 293
L S+HLGVVLTFPVY + LP + E+ + ATAGY+
Sbjct: 39873 LGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYM 39980
Score = 44.6 bits (91), Expect(5) = 8e-050
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -2 / +2
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPV+++QETV Y+E +DMM GE
Sbjct: 39632 YAPVIFAQETVSYLESIDMMSGE 39700
Score = 29.5 bits (58), Expect(5) = 8e-050
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2 / +2
Query: 91 MVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
++ RY K W+A+ST FVI +L+G
Sbjct: 40568 LLYRYHQKAPPNWTALSTAILFFVILLLIG 40657
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
Length = 107448
Score = 121 bits (259), Expect(5) = 1e-049
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -2 / +1
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSSSHICMLD 119
Y+GG+FDVESLVENLL QLAG+Q ++VNVYDVTN S+PL+MYG++ G+ S H LD
Sbjct: 50749 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 50928
Query: 118 FGDPFRKHHMVCR 80
FGDP+RKH M+CR
Sbjct: 50929 FGDPYRKHQMICR 50967
Score = 53.8 bits (111), Expect(5) = 1e-049
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2 / +3
Query: 469 EEDRENILRSRASGKAVLTRPFRLMSNH 386
+EDRENI+R+RA+GKAVLT PFRL+ +H
Sbjct: 50283 QEDRENIMRARATGKAVLTSPFRLLGSH 50366
Score = 51.9 bits (107), Expect(5) = 1e-049
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2 / +3
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYL 293
L S+HLGVVLTFPVY + LP + E+ + ATAGY+
Sbjct: 50355 LGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYM 50462
Score = 44.6 bits (91), Expect(5) = 1e-049
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -2 / +2
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPV+++QETV Y+E +DMM GE
Sbjct: 50114 YAPVIFAQETVSYLESIDMMSGE 50182
Score = 29.5 bits (58), Expect(5) = 1e-049
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2 / +2
Query: 91 MVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
++ RY K W+A+ST FVI +L+G
Sbjct: 51050 LLYRYHQKAPPNWTALSTAILFFVILLLIG 51139
>gb|AC144931.28| Medicago truncatula clone mth2-22b18, complete sequence
Length = 122821
Score = 121 bits (259), Expect(5) = 2e-049
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -2 / +3
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSSSHICMLD 119
Y+GG+FDVESLVENLL QLAG+Q ++VNVYDVTN S+PL+MYG++ G+ S H LD
Sbjct: 22284 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 22463
Query: 118 FGDPFRKHHMVCR 80
FGDP+RKH M+CR
Sbjct: 22464 FGDPYRKHQMICR 22502
Score = 53.8 bits (111), Expect(5) = 2e-049
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2 / +2
Query: 469 EEDRENILRSRASGKAVLTRPFRLMSNH 386
+EDRENI+R+RA+GKAVLT PFRL+ +H
Sbjct: 21818 QEDRENIMRARATGKAVLTSPFRLLGSH 21901
Score = 51.9 bits (107), Expect(5) = 2e-049
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2 / +2
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYL 293
L S+HLGVVLTFPVY + LP + E+ + ATAGY+
Sbjct: 21890 LGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYM 21997
Score = 44.6 bits (91), Expect(5) = 2e-049
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -2 / +1
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPV+++QETV Y+E +DMM GE
Sbjct: 21649 YAPVIFAQETVSYLESIDMMSGE 21717
Score = 29.5 bits (58), Expect(5) = 2e-049
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2 / +1
Query: 91 MVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
++ RY K W+A+ST FVI +L+G
Sbjct: 22585 LLYRYHQKAPPNWTALSTAILFFVILLLIG 22674
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
Length = 151594
Score = 121 bits (259), Expect(5) = 4e-049
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = -2 / -3
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSSSHICMLD 119
Y+GG+FDVESLVENLL QLAG+Q ++VNVYDVTN S+PL+MYG++ G+ S H LD
Sbjct: 129311 YVGGSFDVESLVENLLGQLAGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLD 129132
Query: 118 FGDPFRKHHMVCR 80
FGDP+RKH M+CR
Sbjct: 129131 FGDPYRKHQMICR 129093
Score = 53.8 bits (111), Expect(5) = 4e-049
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -2 / -2
Query: 469 EEDRENILRSRASGKAVLTRPFRLMSNH 386
+EDRENI+R+RA+GKAVLT PFRL+ +H
Sbjct: 129777 QEDRENIMRARATGKAVLTSPFRLLGSH 129694
Score = 51.9 bits (107), Expect(5) = 4e-049
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2 / -2
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYL 293
L S+HLGVVLTFPVY + LP + E+ + ATAGY+
Sbjct: 129705 LGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYM 129598
Score = 44.6 bits (91), Expect(5) = 4e-049
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -2 / -1
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPV+++QETV Y+E +DMM GE
Sbjct: 129946 YAPVIFAQETVSYLESIDMMSGE 129878
Score = 29.5 bits (58), Expect(5) = 4e-049
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2 / -1
Query: 91 MVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
++ RY K W+A+ST FVI +L+G
Sbjct: 129010 LLYRYHQKAPPNWTALSTAILFFVILLLIG 128921
>gb|AC174287.2| Medicago truncatula clone mth2-32a8, WORKING DRAFT SEQUENCE, 8
unordered pieces
Length = 107645
Score = 70.3 bits (147), Expect(6) = 1e-037
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = -2 / -3
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEV 161
YLG ++DV SLV+ LL QLA Q + VNVYD TN S+P+ MYG++V
Sbjct: 31302 YLGASYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDV 31165
Score = 49.6 bits (102), Expect(6) = 1e-037
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = -2 / -3
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAG 299
L SN+LGVVLTF VY + LP DA E R+ AT G
Sbjct: 31683 LKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVG 31582
Score = 48.7 bits (100), Expect(6) = 1e-037
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = -2 / -3
Query: 466 EDRENILRSRASGKAVLTRPFRLMSNH 386
EDRENILR+RASGK VLT PF+L+ ++
Sbjct: 31752 EDRENILRARASGKGVLTSPFKLLKSN 31672
Score = 39.6 bits (80), Expect(6) = 1e-037
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / -3
Query: 136 HICMLDFGDPFRKHHMVCRY 77
HI LDFGDP RKH M CR+
Sbjct: 31146 HISGLDFGDPLRKHEMHCRF 31087
Score = 38.6 bits (78), Expect(6) = 1e-037
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -2 / -3
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPVV++QETV +I +DMM G+
Sbjct: 31989 YAPVVFAQETVSHIVSIDMMSGK 31921
Score = 35.9 bits (72), Expect(6) = 1e-037
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2 / -1
Query: 94 HMVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
H R+++ P PW+A GVFVI L+G
Sbjct: 31025 HFFARFKHTPPFPWTAFWASVGVFVITFLLG 30933
>gb|CX528763.1|CX528763 s13dNF07F11MJ091_243595 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 661
Score = 100 bits (214), Expect(2) = 1e-037
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = -2 / +1
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAGYLGGAFDVESLVENLLRQLAGNQELV 221
L SN LGV+LTF VY LPS+A +R+ AT GYLGG FDVESLVE LL QLA + ++
Sbjct: 448 LKSNRLGVILTFAVYKRYLPSNATPNERLQATNGYLGGVFDVESLVEKLLEQLASKESVI 627
Query: 220 VNVYDVTN 197
VNVYD TN
Sbjct: 628 VNVYDTTN 651
Score = 76.7 bits (161), Expect(2) = 1e-037
Identities = 26/50 (52%), Positives = 42/50 (84%)
Frame = -2 / +1
Query: 535 YAPVVYSQETVXYIEGLDMMXGEEDRENILRSRASGKAVLTRPFRLMSNH 386
YAPV+++Q+T+ ++ +DM+ G+EDR+N+LR+R SGK VLT PFRL+ ++
Sbjct: 310 YAPVIFAQDTISHVISVDMLSGKEDRDNVLRARESGKGVLTAPFRLLKSN 459
>gb|AC160840.20| Medicago truncatula clone mth2-27o21, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 119300
Score = 70.3 bits (147), Expect(6) = 2e-037
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = -2 / -1
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEV 161
YLG ++DV SLV+ LL QLA Q + VNVYD TN S+P+ MYG++V
Sbjct: 114173 YLGASYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDV 114036
Score = 49.6 bits (102), Expect(6) = 2e-037
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = -2 / -1
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAG 299
L SN+LGVVLTF VY + LP DA E R+ AT G
Sbjct: 114554 LKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVG 114453
Score = 48.7 bits (100), Expect(6) = 2e-037
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = -2 / -1
Query: 466 EDRENILRSRASGKAVLTRPFRLMSNH 386
EDRENILR+RASGK VLT PF+L+ ++
Sbjct: 114623 EDRENILRARASGKGVLTSPFKLLKSN 114543
Score = 39.6 bits (80), Expect(6) = 2e-037
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / -1
Query: 136 HICMLDFGDPFRKHHMVCRY 77
HI LDFGDP RKH M CR+
Sbjct: 114017 HISGLDFGDPLRKHEMHCRF 113958
Score = 38.6 bits (78), Expect(6) = 2e-037
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -2 / -1
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPVV++QETV +I +DMM G+
Sbjct: 114860 YAPVVFAQETVSHIVSIDMMSGK 114792
Score = 35.9 bits (72), Expect(6) = 2e-037
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2 / -2
Query: 94 HMVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
H R+++ P PW+A GVFVI L+G
Sbjct: 113896 HFFARFKHTPPFPWTAFWASVGVFVITFLLG 113804
>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE
Length = 127003
Score = 70.3 bits (147), Expect(6) = 2e-037
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = -2 / +3
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEV 161
YLG ++DV SLV+ LL QLA Q + VNVYD TN S+P+ MYG++V
Sbjct: 116436 YLGASYDVPSLVDKLLHQLASQQTIAVNVYDTTNASDPITMYGTDV 116573
Score = 49.6 bits (102), Expect(6) = 2e-037
Identities = 21/34 (61%), Positives = 24/34 (70%)
Frame = -2 / +3
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAG 299
L SN+LGVVLTF VY + LP DA E R+ AT G
Sbjct: 116055 LKSNYLGVVLTFAVYDSKLPPDATPEQRIEATVG 116156
Score = 48.7 bits (100), Expect(6) = 2e-037
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = -2 / +3
Query: 466 EDRENILRSRASGKAVLTRPFRLMSNH 386
EDRENILR+RASGK VLT PF+L+ ++
Sbjct: 115986 EDRENILRARASGKGVLTSPFKLLKSN 116066
Score = 39.6 bits (80), Expect(6) = 2e-037
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -2 / +3
Query: 136 HICMLDFGDPFRKHHMVCRY 77
HI LDFGDP RKH M CR+
Sbjct: 116592 HISGLDFGDPLRKHEMHCRF 116651
Score = 38.6 bits (78), Expect(6) = 2e-037
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -2 / +3
Query: 535 YAPVVYSQETVXYIEGLDMMXGE 467
YAPVV++QETV +I +DMM G+
Sbjct: 115749 YAPVVFAQETVSHIVSIDMMSGK 115817
Score = 35.9 bits (72), Expect(6) = 2e-037
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2 / +1
Query: 94 HMVCRYRNKPHVPWSAISTPSGVFVICMLVG 2
H R+++ P PW+A GVFVI L+G
Sbjct: 116713 HFFARFKHTPPFPWTAFWASVGVFVITFLLG 116805
>gb|AC147538.15| Medicago truncatula clone mth2-135c7, WORKING DRAFT SEQUENCE, 5 ordered
pieces
Length = 133186
Score = 70.7 bits (148), Expect(4) = 4e-028
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -2 / -2
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEV 161
YLGG F++ESLVE LL+QLA Q ++VNVYD TN ++ + MYGS+V
Sbjct: 62100 YLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGSDV 61963
Score = 47.8 bits (98), Expect(4) = 4e-028
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2 / -2
Query: 469 EEDRENILRSRASGKAVLTRPFRLMSNH 386
+EDREN+LR+R SGK VLT PFRL+ +
Sbjct: 62685 QEDRENVLRARESGKGVLTAPFRLLKTN 62602
Score = 46.9 bits (96), Expect(4) = 4e-028
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -2 / -2
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAG 299
L +N LGV+LTF VY DLPS+A +R+ AT G
Sbjct: 62613 LKTNRLGVILTFAVYKRDLPSNATPNERIQATDG 62512
Score = 39.6 bits (80), Expect(4) = 4e-028
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2 / -2
Query: 136 HICMLDFGDPFRKHHMVCR 80
H+ L+FGDPFRKH M CR
Sbjct: 61944 HVSFLNFGDPFRKHEMHCR 61888
>gb|AC147538.16| Medicago truncatula clone mth2-135c7, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 133436
Score = 70.7 bits (148), Expect(4) = 4e-028
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -2 / -1
Query: 298 YLGGAFDVESLVENLLRQLAGNQELVVNVYDVTNISNPLVMYGSEV 161
YLGG F++ESLVE LL+QLA Q ++VNVYD TN ++ + MYGS+V
Sbjct: 61832 YLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGSDV 61695
Score = 47.8 bits (98), Expect(4) = 4e-028
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2 / -1
Query: 469 EEDRENILRSRASGKAVLTRPFRLMSNH 386
+EDREN+LR+R SGK VLT PFRL+ +
Sbjct: 62417 QEDRENVLRARESGKGVLTAPFRLLKTN 62334
Score = 46.9 bits (96), Expect(4) = 4e-028
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -2 / -1
Query: 400 LMSNHLGVVLTFPVYHADLPSDAKEEDRVAATAG 299
L +N LGV+LTF VY DLPS+A +R+ AT G
Sbjct: 62345 LKTNRLGVILTFAVYKRDLPSNATPNERIQATDG 62244
Score = 39.6 bits (80), Expect(4) = 4e-028
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2 / -1
Query: 136 HICMLDFGDPFRKHHMVCR 80
H+ L+FGDPFRKH M CR
Sbjct: 61676 HVSFLNFGDPFRKHEMHCR 61620
>gb|AA660817.1|AA660817 00711 MtRHE Medicago truncatula cDNA 5' similar to sensory
transduction histidine kinase, mRNA sequence
Length = 625
Score = 108 bits (231), Expect = 6e-023
Identities = 43/80 (53%), Positives = 57/80 (71%)
Frame = -2 / +1
Query: 241 AGNQELVVNVYDVTNISNPLVMYGSEVPLGNPSSSHICMLDFGDPFRKHHMVCRYRNKPH 62
AG+Q ++VNVYDVTN S+PL+MYG++ G+ S H LDFGDP+RKH M+CRY K
Sbjct: 1 AGHQAILVNVYDVTNSSDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAP 180
Query: 61 VPWSAISTPSGVFVICMLVG 2
W+A+ST FVI +L+G
Sbjct: 181 PNWTALSTAILFFVILLLIG 240
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 552,982,500
Number of Sequences: 392609
Number of extensions: 7845986
Number of successful extensions: 55216
Number of sequences better than 1.0e-020: 15
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 16689559128
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)