TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cD... 148 2e-046
gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula c... 141 2e-044
gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago... 116 7e-037
gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula c... 151 8e-036
gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infect... 149 4e-035
gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula c... 140 1e-032
gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula c... 118 6e-026
gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medi... 118 6e-026
gb|AC141107.5| Medicago truncatula clone mth2-34a12, comple... 95 6e-026
gb|AJ496918.1|AJ496918 AJ496918 MTFLOW Medicago truncatula ... 72 4e-022
gb|BQ155590.1|BQ155590 NF082B01IR1F1013 Irradiated Medicago... 59 8e-022
gb|BE248680.2|BE248680 NF022H06DT1F1057 Drought Medicago tr... 93 1e-021
>gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cDNA clone pKV3-16D2, mRNA
sequence
Length = 616
Score = 148 bits (320), Expect(2) = 2e-046
Identities = 62/107 (57%), Positives = 78/107 (72%)
Frame = +1 / -2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 615 KNSDMVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 436
Query: 235 QLPNYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLE 375
Q + LV SAITW N D Y++I+ VNFG+ AV+L IS GL+
Sbjct: 435 QTTASNSLVASAITWQNSVDKKNYIRIQAVNFGTSAVNLKISFNGLD 295
Score = 64.4 bits (135), Expect(3) = 1e-025
Identities = 35/54 (64%), Positives = 38/54 (70%)
Frame = -3 / +2
Query: 218 SVALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLF 57
SVA +S K IQ* G P* EL TIASGFHL SL+FT+SGA LAI T SLF
Sbjct: 452 SVAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLF 613
Score = 58.5 bits (122), Expect(2) = 2e-046
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1 / -2
Query: 382 IQTFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
+Q+ GS KTVLTS L DENSF QP KV+P S + + GK M VI+
Sbjct: 285 LQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIV 148
Score = 51.2 bits (106), Expect(3) = 1e-025
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = -3 / +2
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFPSCGLFQVIADVTS 255
SNP+ +I R TAL+PKFT I M* F S QVIAD TS
Sbjct: 296 SNPLKEILRFTALVPKFTACILM*FFLSTEFCQVIADATS 415
Score = 38.5 bits (78), Expect(3) = 1e-025
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = -3 / +2
Query: 515 ITPICLPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPN 390
IT + P L L G T GC KEFSS DV TVF++P+
Sbjct: 152 ITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVFVEPD 277
>gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula cDNA clone MTUS-14H2, mRNA
sequence
Length = 668
Score = 141 bits (305), Expect(2) = 2e-044
Identities = 61/107 (57%), Positives = 76/107 (71%)
Frame = +1 / -2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+R PDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 667 KNSDIVHMASYAPLFVNANDRR*TPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 488
Query: 235 QLPNYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLE 375
Q + LV SAITW N D Y++IK VNFG+ AV+L IS GL+
Sbjct: 487 QTTASNSLVASAITWQNSVDKKNYIRIKAVNFGTSAVNLKISFNGLD 347
Score = 61.3 bits (128), Expect(3) = 9e-026
Identities = 34/54 (62%), Positives = 37/54 (68%)
Frame = -3 / +3
Query: 218 SVALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLF 57
SVA +S K IQ* G P* EL TIASG HL SL+FT+SGA LAI T SLF
Sbjct: 504 SVAPFDSEKNNCIQ*LGVP*S*KELNTIASGVHLLSLAFTKSGA*LAIWTISLF 665
Score = 58.5 bits (122), Expect(2) = 2e-044
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1 / -2
Query: 382 IQTFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
+Q+ GS KTVLTS L DENSF QP KV+P S + + GK M VI+
Sbjct: 337 LQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIV 200
Score = 54.9 bits (114), Expect(3) = 9e-026
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = -3 / +3
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFPSCGLFQVIADVTS 255
SNP+ +I R TAL+PKFT FI M* F S QVIAD TS
Sbjct: 348 SNPLKEILRFTALVPKFTAFILM*FFLSTEFCQVIADATS 467
Score = 38.5 bits (78), Expect(3) = 9e-026
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = -3 / +3
Query: 515 ITPICLPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPN 390
IT + P L L G T GC KEFSS DV TVF++P+
Sbjct: 204 ITFMSFPTL*SRLWIGITFFGCEKEFSSIKFVDVSTVFVEPD 329
>gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago truncatula cDNA clone
NF080G03IR 5', mRNA sequence
Length = 653
Score = 116 bits (249), Expect(2) = 7e-037
Identities = 48/85 (56%), Positives = 60/85 (70%)
Frame = +1 / +2
Query: 121 WNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQLPNYDQLVTSAITWNNPHDGN 300
WNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++Q + LV SAITW N D
Sbjct: 2 WNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNSVDKK 181
Query: 301 TYMKIKVVNFGSKAVSLNISVTGLE 375
Y++IK VNFG+ AV+L IS GL+
Sbjct: 182 NYIRIKAVNFGTSAVNLKISFNGLD 256
Score = 58.5 bits (122), Expect(2) = 7e-037
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1 / +2
Query: 382 IQTFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
+Q+ GS KTVLTS L DENSF QP KV+P S + + GK M VI+
Sbjct: 266 LQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIV 403
>gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 624
Score = 151 bits (326), Expect = 8e-036
Identities = 63/107 (58%), Positives = 78/107 (72%)
Frame = +1 / +2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 284 KNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 463
Query: 235 QLPNYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLE 375
Q + LV SAITW N D Y++IK VNFG+ AV+L IS GL+
Sbjct: 464 QTTASNSLVASAITWQNSVDKKNYIRIKAVNFGTSAVNLKISFNGLD 604
Score = 86.8 bits (184), Expect(2) = 3e-027
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = -3 / -1
Query: 218 SVALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMR 39
SVA +S K IQ* G P* EL TIASGFHL SL+FT+SGA LAI T SLF S+P+R
Sbjct: 447 SVAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIR 268
Query: 38 NAASAKAAISVP 3
N ASA+AA +P
Sbjct: 267 NPASARAAKRLP 232
Score = 54.9 bits (114), Expect(2) = 3e-027
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = -3 / -1
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFPSCGLFQVIADVTS 255
SNP+ +I R TAL+PKFT FI M* F S QVIAD TS
Sbjct: 603 SNPLKEILRFTALVPKFTAFILM*FFLSTEFCQVIADATS 484
>gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 455
Score = 149 bits (321), Expect = 4e-035
Identities = 62/107 (57%), Positives = 78/107 (72%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 105 KNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 284
Query: 235 QLPNYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLE 375
Q + LV SAITW N D +++IK VNFG+ AV+L IS GL+
Sbjct: 285 QTTASNSLVASAITWQNSVDKKNHIRIKAVNFGTSAVNLKISFNGLD 425
Score = 86.8 bits (184), Expect(2) = 4e-027
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = -3 / -2
Query: 218 SVALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMR 39
SVA +S K IQ* G P* EL TIASGFHL SL+FT+SGA LAI T SLF S+P+R
Sbjct: 268 SVAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIR 89
Query: 38 NAASAKAAISVP 3
N ASA+AA +P
Sbjct: 88 NPASARAAKRLP 53
Score = 54.9 bits (114), Expect(2) = 4e-027
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = -3 / -2
Query: 374 SNPVTDIFRLTALLPKFTTFIFM*VFPSCGLFQVIADVTS 255
SNP+ +I R TAL+PKFT FI M* F S QVIAD TS
Sbjct: 424 SNPLKEILRFTALVPKFTAFILM*FFLSTEFCQVIADATS 305
>gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula cDNA clone pGVSN-12F5, mRNA
sequence
Length = 580
Score = 140 bits (303), Expect = 1e-032
Identities = 58/98 (59%), Positives = 72/98 (73%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 286 KNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 465
Query: 235 QLPNYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVS 348
Q + LV SAITW N D Y++IK VNFG+ AV+
Sbjct: 466 QTTASNSLVASAITWQNSVDKKNYIRIKAVNFGTSAVN 579
Score = 86.8 bits (184), Expect(2) = 2e-023
Identities = 45/72 (62%), Positives = 52/72 (72%)
Frame = -3 / -3
Query: 218 SVALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMR 39
SVA +S K IQ* G P* EL TIASGFHL SL+FT+SGA LAI T SLF S+P+R
Sbjct: 449 SVAPFDSEKNNCIQ*LGVP*S*KELNTIASGFHLLSLAFTKSGA*LAIWTISLFFSSPIR 270
Query: 38 NAASAKAAISVP 3
N ASA+AA +P
Sbjct: 269 NPASARAAKRLP 234
Score = 42.1 bits (86), Expect(2) = 2e-023
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = -3 / -3
Query: 344 TALLPKFTTFIFM*VFPSCGLFQVIADVTS 255
TAL+PKFT FI M* F S QVIAD TS
Sbjct: 575 TALVPKFTAFILM*FFLSTEFCQVIADATS 486
>gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 514
Score = 118 bits (254), Expect = 6e-026
Identities = 49/80 (61%), Positives = 59/80 (73%)
Frame = +1 / +2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 272 KNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 451
Query: 235 QLPNYDQLVTSAITWNNPHD 294
Q + LV SAITW N D
Sbjct: 452 QTTASNSLVASAITWQNSVD 511
>gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medicago truncatula cDNA clone
NF008B12PH 5', mRNA sequence
Length = 670
Score = 118 bits (254), Expect = 6e-026
Identities = 49/80 (61%), Positives = 59/80 (73%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+V MAS APL VN ND+RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++
Sbjct: 372 KNSDIVHMASYAPLFVNANDRRWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSL 551
Query: 235 QLPNYDQLVTSAITWNNPHD 294
Q + LV SAITW N D
Sbjct: 552 QTTASNSLVASAITWQNSVD 611
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
Length = 142659
Score = 95.4 bits (203), Expect(3) = 6e-026
Identities = 39/68 (57%), Positives = 48/68 (70%)
Frame = +1 / +2
Query: 118 RWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQLPNYDQLVTSAITWNNPHDG 297
RWNPDAIVFNS+Q YG P+YWM FF +S+ ATL S++Q + LV SAITW N D
Sbjct: 58688 RWNPDAIVFNSFQLYGTPSYWMQLFFSESNGATLLNSSLQTTASNSLVASAITWQNSVDK 58867
Query: 298 NTYMKIKV 321
Y++IKV
Sbjct: 58868 KNYIRIKV 58891
Score = 95.0 bits (202), Expect(3) = 2e-023
Identities = 36/69 (52%), Positives = 49/69 (71%)
Frame = +1 / +1
Query: 121 WNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQLPNYDQLVTSAITWNNPHDGN 300
WNPDAIVFNS+Q YG P+YW+ + FK+S+ AT S +Q P+ L+ SAI +P + +
Sbjct: 92314 WNPDAIVFNSYQAYGTPSYWVTYMFKESNGATFLNSQLQTPDPGSLIASAILCQSPQNNS 92493
Query: 301 TYMKIKVVN 327
TY+KIKV N
Sbjct: 92494 TYLKIKVTN 92520
Score = 42.1 bits (86), Expect(3) = 6e-026
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = +1 / +2
Query: 382 IQTFGSIKTVLTSGWLRDENSFQQPDKV 465
+Q+ GS KTVLTS L DENSF QP KV
Sbjct: 59321 LQSSGSTKTVLTSTNLMDENSFSQPKKV 59404
Score = 37.1 bits (75), Expect(3) = 2e-023
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 394 GSIKTVLTSGWLRDENSFQQPDKV 465
GS KTVLTSG + DEN+F P KV
Sbjct: 92735 GSTKTVLTSGNILDENTFAAPKKV 92806
Score = 35.3 bits (71), Expect(3) = 6e-026
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQR 120
R SD+V MAS APL VN ND+R
Sbjct: 58467 RCSDIVHMASYAPLFVNANDRR 58532
Score = 32.6 bits (65), Expect(3) = 2e-023
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1 / +2
Query: 61 SDVVEMASCAPLLVNDNDQRW 123
SD V MAS APLLVN ND+++
Sbjct: 65987 SDHVAMASYAPLLVNANDRKY 66049
>gb|AJ496918.1|AJ496918 AJ496918 MTFLOW Medicago truncatula cDNA clone mt--abc955101f08,
mRNA sequence
Length = 642
Score = 72.2 bits (152), Expect(3) = 4e-022
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +1 / +1
Query: 154 QHYGCPNYWMLHFFKDSSSATLHPSTIQLPNYDQLVTSAITWNNPHDGNTYMKIKVVNFG 333
Q YG P+YW+ + FK+S+ AT ST+Q + L SAI +P + NTY+KIK+ N
Sbjct: 40 QVYGTPSYWVTYLFKESNGATFLNSTLQTTDPGTLAASAILVKDPQNKNTYLKIKIANMR 219
Query: 334 SKAVSLNISVTG 369
V IS+ G
Sbjct: 220 KTQVDFKISIQG 255
Score = 42.6 bits (87), Expect(3) = 4e-022
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +1
Query: 433 DENSFQQPDKVVPAASPITNAGKQMGVIL 519
DENSF +P K+ P SP+ N G +M VI+
Sbjct: 313 DENSFAEPKKIAPQTSPLQNPGNEMNVIV 399
Score = 28.0 bits (55), Expect(3) = 4e-022
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1 / +2
Query: 121 WNPDAIVFNSWQHYG 165
WNPDAIVF+S + G
Sbjct: 8 WNPDAIVFSSIKFMG 52
>gb|BQ155590.1|BQ155590 NF082B01IR1F1013 Irradiated Medicago truncatula cDNA clone
NF082B01IR 5', mRNA sequence
Length = 600
Score = 58.5 bits (122), Expect(3) = 8e-022
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +1 / +3
Query: 382 IQTFGSIKTVLTSGWLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
+Q+ GS KTVLTS L DENSF QP KV+P S + + GK M VI+
Sbjct: 219 LQSSGSTKTVLTSTNLMDENSFSQPKKVIPIQSLLQSVGKDMNVIV 356
Score = 56.2 bits (117), Expect(3) = 8e-022
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +1 / +3
Query: 250 DQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLE 375
+ LV SAITW N D Y++IK VNFG+ AV+L IS GL+
Sbjct: 84 NSLVASAITWQNSVDKKNYIRIKAVNFGTSAVNLKISFNGLD 209
Score = 27.1 bits (53), Expect(3) = 8e-022
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1 / +2
Query: 178 WMLHFFKDSSSATLHPSTIQLPNYD 252
WM FF +S+ ATL S++Q ++
Sbjct: 11 WMQLFFSESNGATLLNSSLQTTGFE 85
>gb|BE248680.2|BE248680 NF022H06DT1F1057 Drought Medicago truncatula cDNA clone NF022H06DT
5', mRNA sequence
Length = 375
Score = 93.1 bits (198), Expect(2) = 1e-021
Identities = 36/61 (59%), Positives = 46/61 (75%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSDVV M + APL VN ND++W PDAIVF+S Q YG P+YW++ FK+SS AT ST+
Sbjct: 97 KNSDVVSMVNYAPLFVNTNDRKWTPDAIVFDSHQVYGIPSYWLIKLFKESSGATFLNSTL 276
Query: 235 Q 237
Q
Sbjct: 277 Q 279
Score = 30.3 bits (60), Expect(2) = 1e-021
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1 / +1
Query: 256 LVTSAITWNNPHDGNTYMKIKVVN 327
L SAI+W + DG + ++IKV N
Sbjct: 295 LAASAISWKSSVDGTSILRIKVAN 366
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.316 0.130 0.405
Matrix: BLOSUM62
Number of Hits to DB: 596,032,341
Number of Sequences: 392609
Number of extensions: 8701431
Number of successful extensions: 63983
Number of sequences better than 1.0e-020: 15
length of database: 147,244,331
effective HSP length: 52
effective length of database: 126,828,663
effective search space used: 15473096886
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)