TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.3
(732 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG939320.1|CG939320 MBEEN74TFB mth2 Medicago truncatula ... 108 9e-023
gb|CG949724.1|CG949724 MBEEN39TFB mth2 Medicago truncatula ... 108 9e-023
gb|CG972015.1|CG972015 MBEGP34TR mth2 Medicago truncatula g... 108 9e-023
gb|AC148776.12| Medicago truncatula clone mth2-39g6, comple... 108 9e-023
gb|AC130653.31| Medicago truncatula clone mth1-13b3, comple... 108 9e-023
gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKIN... 108 9e-023
emb|CT573026.4| Medicago truncatula chromosome 3 clone MTH2... 108 9e-023
gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone m... 104 2e-021
gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-... 104 2e-021
>gb|CG939320.1|CG939320 MBEEN74TFB mth2 Medicago truncatula genomic clone 39M4, DNA
sequence
Length = 880
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / -1
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 226 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 83
>gb|CG949724.1|CG949724 MBEEN39TFB mth2 Medicago truncatula genomic clone 39G6, DNA
sequence
Length = 868
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / -1
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 226 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 83
>gb|CG972015.1|CG972015 MBEGP34TR mth2 Medicago truncatula genomic clone 51F20, DNA
sequence
Length = 398
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / -1
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 221 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 78
>gb|AC148776.12| Medicago truncatula clone mth2-39g6, complete sequence
Length = 109378
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / +3
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 109158 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 109301
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
Length = 166135
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / -2
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 50496 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 50353
>gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 125828
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / -1
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 97706 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 97563
>emb|CT573026.4| Medicago truncatula chromosome 3 clone MTH2-39M4, WORKING DRAFT SEQUENCE
Length = 109385
Score = 108 bits (231), Expect = 9e-023
Identities = 43/48 (89%), Positives = 46/48 (95%)
Frame = +2 / +1
Query: 389 QDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
QD+ MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMVIFPNYVS
Sbjct: 109159 QDSGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVIFPNYVS 109302
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete sequence
Length = 124955
Score = 104 bits (222), Expect = 2e-021
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +2 / +1
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
L+QD+ MDWIIHLDTDELIHPAG +EYS+R+LL DVP NVDMVIFPNYVS
Sbjct: 109120 LTQDSGMDWIIHLDTDELIHPAGTQEYSMRQLLSDVPGNVDMVIFPNYVS 109269
>gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-59p23, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 106073
Score = 104 bits (222), Expect = 2e-021
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = +2 / +3
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
L+QD+ MDWIIHLDTDELIHPAG +EYS+R+LL DVP NVDMVIFPNYVS
Sbjct: 8157 LTQDSGMDWIIHLDTDELIHPAGTQEYSMRQLLSDVPGNVDMVIFPNYVS 8306
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 639,534,584
Number of Sequences: 392609
Number of extensions: 8728414
Number of successful extensions: 43013
Number of sequences better than 1.0e-020: 11
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 23822211105
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)