TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX526462.1|CX526462 s13dNF46B03AT029_510668 Aphid-Infect... 81 2e-031
gb|AC148776.12| Medicago truncatula clone mth2-39g6, comple... 88 2e-026
emb|CT573026.4| Medicago truncatula chromosome 3 clone MTH2... 88 2e-026
gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKIN... 88 3e-026
gb|AC130653.31| Medicago truncatula clone mth1-13b3, comple... 88 3e-026
gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-... 81 5e-024
gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone m... 81 5e-024
gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula c... 59 2e-008
gb|CG939320.1|CG939320 MBEEN74TFB mth2 Medicago truncatula ... 59 3e-008
gb|CG949724.1|CG949724 MBEEN39TFB mth2 Medicago truncatula ... 59 3e-008
gb|CG972015.1|CG972015 MBEGP34TR mth2 Medicago truncatula g... 40 0.011
gb|AW695452.2|AW695452 NF094H09ST1F1079 Developing stem Med... 27 0.032
gb|CA918739.1|CA918739 EST636457 MTUS Medicago truncatula c... 35 0.67
gb|CX537743.1|CX537743 s13dNF25A05GS033_458722 Germinating ... 35 0.67
emb|CR301320.1| mte1-2I9FM1 BAC end, cultivar Jemalong A17 ... 24 6.5
gb|CG937573.1|CG937573 MBEIQ52TF mth2 Medicago truncatula g... 31 8.5
emb|CR334354.1| mte1-64P17RM2 BAC end, cultivar Jemalong A1... 31 8.5
emb|CR334629.1| mte1-64P16RM2 BAC end, cultivar Jemalong A1... 31 8.5
gb|AW329250.2|AW329250 N200468e rootphos(-) Medicago trunca... 31 8.5
gb|AL384018.1|AL384018 MtBC18D05F1 MtBC Medicago truncatula... 31 8.5
gb|AW686828.2|AW686828 NF043G10NR1F1000 Nodulated root Medi... 31 8.5
gb|CA921132.1|CA921132 EST638850 MTUS Medicago truncatula c... 31 8.5
>gb|CX526462.1|CX526462 s13dNF46B03AT029_510668 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 617
Score = 81.3 bits (171), Expect(2) = 2e-031
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = +3 / +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL Q LPW+YYH V+GVS F L VEG+AA P + VLE+I
Sbjct: 189 ICITTSTSAGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETI 335
Score = 73.9 bits (155), Expect(2) = 2e-031
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RD+ MD I TD I +E
Sbjct: 390 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELIHPAGTQE 569
Query: 331 Y 333
Y
Sbjct: 570 Y 572
Score = 51.0 bits (105), Expect(2) = 2e-012
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = -1 / -2
Query: 142 SRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
S+T G AA PST KK ETP+TL** HG + +PA+VL VI I
Sbjct: 328 SKTLDTLGEAAFPSTKSKKLETPITL***IHGSVCSKPAEVLVVIHI 188
Score = 40.0 bits (81), Expect(2) = 2e-012
Identities = 25/61 (40%), Positives = 29/61 (47%)
Frame = -3 / -2
Query: 332 YSRXXXXXXXSSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMR 153
YS SSV M S+ SL + ISMF C +S* GL* QVSF +R
Sbjct: 571 YSCVPAGCISSSVSRWMIQSMPESLAMTIAISMFKDCFTNNS*LQGL*KKLDNQVSFHIR 392
Query: 152 L 150
L
Sbjct: 391 L 389
Score = 39.1 bits (79), Expect = 0.028
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -2 / -1
Query: 300 ISXXXXDXIHSSIPXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAA 151
IS D IH+ IP H+N HFHV LL + V+ S +P A
Sbjct: 539 ISVQMDDPIHARIPCHDNCHFHVQRLLYK*LIVTRFVEEA*QPSFVPYTA 390
Score = 34.1 bits (68), Expect = 0.92
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2 / +1
Query: 152 AAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXGMLEWIXSXXXILM 301
A +G +L Q T+ + S *TWK L G+L WI S LM
Sbjct: 391 AVYGTKLGCQASSTNLVTMSYL*SNL*TWKWQLSWQGILAWIGSSIWTLM 540
>gb|AC148776.12| Medicago truncatula clone mth2-39g6, complete sequence
Length = 109378
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +3 / +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
IC+T STSAGL QILPW++YH VIGV++FFL VEG+AA P + VLESI
Sbjct: 107721 ICVTSSTSAGLEQILPWMFYHKVIGVTNFFLFVEGKAATPEVSKVLESI 107867
Score = 58.8 bits (122), Expect(2) = 2e-026
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = +1 / +2
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET A FYKP YEL Q LNMEM I+M R
Sbjct: 108950 SRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAR 109060
Score = 57.0 bits (118), Expect(2) = 2e-013
Identities = 30/49 (61%), Positives = 33/49 (67%)
Frame = -1 / -1
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDS+T +G AA PST RKK TPMTL** GRI PA+VL V QI
Sbjct: 107866 IDSKTFDTSGVAAFPSTKRKKFVTPMTL**NIQGRICSSPAEVLLVTQI 107720
Score = 46.0 bits (94), Expect(2) = 2e-013
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / -1
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAAE 148
P HNN H H+ LL FV LVK C L+PN A+
Sbjct: 109060 PCHNNSHLHIEGLLYKKFVIAWLVKEACQPCLVPNTAD 108947
Score = 34.5 bits (69), Expect = 0.67
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3 / -2
Query: 275 SILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+I +L I IS+ C SS* GL* A VSFQ+RL
Sbjct: 109074 TICHTLAITIAISILRDCFTKSS*LHGL*KKLASHVSFQIRL 108949
Score = 33.6 bits (67), Expect(2) = 0.010
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3 / +1
Query: 150 QPHLE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*N 272
QP+LE D+ + LQA LRT A ++G+ Y G N
Sbjct: 108949 QPYLERDMAGKLLLQAMQLRTFCKAIPQYGDGYCYGKGMAN 109071
Score = 32.2 bits (64), Expect(2) = 1.1
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2 / +3
Query: 143 IYSAAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXG 262
+ SA FG R Q FTS ITN S W+ LL G
Sbjct: 108942 VASAVFGTRHGWQASFTSHAITNFL*SNPSIWRWLLLWQG 109061
Score = 32.2 bits (64), Expect(2) = 0.010
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2 / +2
Query: 2 DLYHGKHICWPTPDSSMVVLSQCHWCFTFLSIS*RRGC 115
DL H ++ DSS+ VLSQ HW S+ GC
Sbjct: 107720 DLCHK*YLSRARADSSLDVLSQSHWSDKLFSLCGGEGC 107833
Score = 26.3 bits (51), Expect(2) = 1.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2 / +3
Query: 35 TPDSSMVVLSQCHWCFTFLSIS*RRGCKASXXLCS*IY 148
T S M V H CFTF ++ ++ A+ S* Y
Sbjct: 56478 TKSSKMGV*HSSHMCFTFSKVTRKKQLTAAYVSIS*FY 56591
>emb|CT573026.4| Medicago truncatula chromosome 3 clone MTH2-39M4, WORKING DRAFT SEQUENCE
Length = 109385
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +3 / +1
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
IC+T STSAGL QILPW++YH VIGV++FFL VEG+AA P + VLESI
Sbjct: 107722 ICVTSSTSAGLEQILPWMFYHKVIGVTNFFLFVEGKAATPEVSKVLESI 107868
Score = 58.8 bits (122), Expect(2) = 2e-026
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET A FYKP YEL Q LNMEM I+M R
Sbjct: 108951 SRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAR 109061
Score = 57.0 bits (118), Expect(2) = 2e-013
Identities = 30/49 (61%), Positives = 33/49 (67%)
Frame = -1 / -1
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDS+T +G AA PST RKK TPMTL** GRI PA+VL V QI
Sbjct: 107867 IDSKTFDTSGVAAFPSTKRKKFVTPMTL**NIQGRICSSPAEVLLVTQI 107721
Score = 46.0 bits (94), Expect(2) = 2e-013
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / -1
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAAE 148
P HNN H H+ LL FV LVK C L+PN A+
Sbjct: 109061 PCHNNSHLHIEGLLYKKFVIAWLVKEACQPCLVPNTAD 108948
Score = 34.5 bits (69), Expect = 0.67
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3 / -2
Query: 275 SILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+I +L I IS+ C SS* GL* A VSFQ+RL
Sbjct: 109075 TICHTLAITIAISILRDCFTKSS*LHGL*KKLASHVSFQIRL 108950
Score = 33.6 bits (67), Expect(2) = 0.010
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3 / +2
Query: 150 QPHLE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*N 272
QP+LE D+ + LQA LRT A ++G+ Y G N
Sbjct: 108950 QPYLERDMAGKLLLQAMQLRTFCKAIPQYGDGYCYGKGMAN 109072
Score = 32.2 bits (64), Expect(2) = 1.1
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2 / +1
Query: 143 IYSAAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXG 262
+ SA FG R Q FTS ITN S W+ LL G
Sbjct: 108943 VASAVFGTRHGWQASFTSHAITNFL*SNPSIWRWLLLWQG 109062
Score = 32.2 bits (64), Expect(2) = 0.010
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2 / +3
Query: 2 DLYHGKHICWPTPDSSMVVLSQCHWCFTFLSIS*RRGC 115
DL H ++ DSS+ VLSQ HW S+ GC
Sbjct: 107721 DLCHK*YLSRARADSSLDVLSQSHWSDKLFSLCGGEGC 107834
Score = 26.3 bits (51), Expect(2) = 1.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2 / +2
Query: 35 TPDSSMVVLSQCHWCFTFLSIS*RRGCKASXXLCS*IY 148
T S M V H CFTF ++ ++ A+ S* Y
Sbjct: 56480 TKSSKMGV*HSSHMCFTFSKVTRKKQLTAAYVSIS*FY 56593
>gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 125828
Score = 87.7 bits (185), Expect(2) = 3e-026
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +3 / -1
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
IC+T STSAGL QILPW++YH VIGV++FFL VEG+AA P + VLESI
Sbjct: 99143 ICVTSSTSAGLEQILPWMFYHKVIGVTNFFLFVEGKAATPEVSKVLESI 98997
Score = 58.8 bits (122), Expect(2) = 3e-026
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = +1 / -3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET A FYKP YEL Q LNMEM I+M R
Sbjct: 97914 SRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAR 97804
Score = 57.0 bits (118), Expect(2) = 2e-013
Identities = 30/49 (61%), Positives = 33/49 (67%)
Frame = -1 / +1
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDS+T +G AA PST RKK TPMTL** GRI PA+VL V QI
Sbjct: 98998 IDSKTFDTSGVAAFPSTKRKKFVTPMTL**NIQGRICSSPAEVLLVTQI 99144
Score = 46.0 bits (94), Expect(2) = 2e-013
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / +1
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAAE 148
P HNN H H+ LL FV LVK C L+PN A+
Sbjct: 97804 PCHNNSHLHIEGLLYKKFVIAWLVKEACQPCLVPNTAD 97917
Score = 34.5 bits (69), Expect = 0.67
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3 / +2
Query: 275 SILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+I +L I IS+ C SS* GL* A VSFQ+RL
Sbjct: 97790 TICHTLAITIAISILRDCFTKSS*LHGL*KKLASHVSFQIRL 97915
Score = 33.6 bits (67), Expect(2) = 0.011
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3 / -2
Query: 150 QPHLE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*N 272
QP+LE D+ + LQA LRT A ++G+ Y G N
Sbjct: 97915 QPYLERDMAGKLLLQAMQLRTFCKAIPQYGDGYCYGKGMAN 97793
Score = 32.2 bits (64), Expect(2) = 2.3
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2 / -1
Query: 143 IYSAAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXG 262
+ SA FG R Q FTS ITN S W+ LL G
Sbjct: 97922 VASAVFGTRHGWQASFTSHAITNFL*SNPSIWRWLLLWQG 97803
Score = 32.2 bits (64), Expect(2) = 0.011
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2 / -3
Query: 2 DLYHGKHICWPTPDSSMVVLSQCHWCFTFLSIS*RRGC 115
DL H ++ DSS+ VLSQ HW S+ GC
Sbjct: 99144 DLCHK*YLSRARADSSLDVLSQSHWSDKLFSLCGGEGC 99031
Score = 25.4 bits (49), Expect(2) = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1 / -2
Query: 1 RSVSREAHLLAYTRFFHGCIITMSL 75
R VS+ +RFF GC IT SL
Sbjct: 99145 RFVSQVVPQQGSSRFFPGCFITKSL 99071
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
Length = 166135
Score = 87.7 bits (185), Expect(2) = 3e-026
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +3 / -2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
IC+T STSAGL QILPW++YH VIGV++FFL VEG+AA P + VLESI
Sbjct: 51933 ICVTSSTSAGLEQILPWMFYHKVIGVTNFFLFVEGKAATPEVSKVLESI 51787
Score = 58.8 bits (122), Expect(2) = 3e-026
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = +1 / -1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET A FYKP YEL Q LNMEM I+M R
Sbjct: 50704 SRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAR 50594
Score = 57.0 bits (118), Expect(2) = 3e-013
Identities = 30/49 (61%), Positives = 33/49 (67%)
Frame = -1 / +2
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDS+T +G AA PST RKK TPMTL** GRI PA+VL V QI
Sbjct: 51788 IDSKTFDTSGVAAFPSTKRKKFVTPMTL**NIQGRICSSPAEVLLVTQI 51934
Score = 46.0 bits (94), Expect(2) = 3e-013
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / +2
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAAE 148
P HNN H H+ LL FV LVK C L+PN A+
Sbjct: 50594 PCHNNSHLHIEGLLYKKFVIAWLVKEACQPCLVPNTAD 50707
Score = 34.5 bits (69), Expect = 0.67
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3 / +3
Query: 275 SILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+I +L I IS+ C SS* GL* A VSFQ+RL
Sbjct: 50580 TICHTLAITIAISILRDCFTKSS*LHGL*KKLASHVSFQIRL 50705
Score = 33.6 bits (67), Expect(2) = 0.015
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3 / -3
Query: 150 QPHLE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*N 272
QP+LE D+ + LQA LRT A ++G+ Y G N
Sbjct: 50705 QPYLERDMAGKLLLQAMQLRTFCKAIPQYGDGYCYGKGMAN 50583
Score = 32.2 bits (64), Expect(2) = 1.6
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2 / -2
Query: 143 IYSAAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXG 262
+ SA FG R Q FTS ITN S W+ LL G
Sbjct: 50712 VASAVFGTRHGWQASFTSHAITNFL*SNPSIWRWLLLWQG 50593
Score = 32.2 bits (64), Expect(2) = 0.015
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2 / -1
Query: 2 DLYHGKHICWPTPDSSMVVLSQCHWCFTFLSIS*RRGC 115
DL H ++ DSS+ VLSQ HW S+ GC
Sbjct: 51934 DLCHK*YLSRARADSSLDVLSQSHWSDKLFSLCGGEGC 51821
Score = 26.3 bits (51), Expect(2) = 1.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2 / -2
Query: 35 TPDSSMVVLSQCHWCFTFLSIS*RRGCKASXXLCS*IY 148
T S M V H CFTF ++ ++ A+ S* Y
Sbjct: 103176 TKSSKMGV*HSSHMCFTFSKVTRKKQLTAAYVSIS*FY 103063
>gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-59p23, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 106073
Score = 81.3 bits (171), Expect(2) = 5e-024
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = +3 / +2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL Q LPW+YYH V+GVS F L VEG+AA P + VLE+I
Sbjct: 6710 ICITTSTSAGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETI 6856
Score = 57.4 bits (119), Expect(2) = 5e-024
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET + FYKP YEL Q LNMEM I+M R
Sbjct: 7941 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMAR 8051
Score = 51.0 bits (105), Expect(2) = 1e-007
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = -1 / -3
Query: 142 SRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
S+T G AA PST KK ETP+TL** HG + +PA+VL VI I
Sbjct: 6849 SKTLDTLGEAAFPSTKSKKLETPITL***IHGSVCSKPAEVLVVIHI 6709
Score = 32.2 bits (64), Expect(2) = 1e-007
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3 / -2
Query: 263 SLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+L + ISMF C +S* GL* QVSF +RL
Sbjct: 8053 TLAMTIAISMFKDCFTNNS*LQGL*KKLDNQVSFHIRL 7940
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete sequence
Length = 124955
Score = 81.3 bits (171), Expect(2) = 5e-024
Identities = 33/49 (67%), Positives = 38/49 (77%)
Frame = +3 / +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL Q LPW+YYH V+GVS F L VEG+AA P + VLE+I
Sbjct: 107673 ICITTSTSAGLEQTLPWIYYHKVMGVSSFLLFVEGKAASPNVSRVLETI 107819
Score = 57.4 bits (119), Expect(2) = 5e-024
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +1 / +1
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET + FYKP YEL Q LNMEM I+M R
Sbjct: 108904 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMAR 109014
Score = 51.0 bits (105), Expect(2) = 1e-007
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = -1 / -2
Query: 142 SRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
S+T G AA PST KK ETP+TL** HG + +PA+VL VI I
Sbjct: 107812 SKTLDTLGEAAFPSTKSKKLETPITL***IHGSVCSKPAEVLVVIHI 107672
Score = 32.2 bits (64), Expect(2) = 1e-007
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3 / -1
Query: 263 SLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+L + ISMF C +S* GL* QVSF +RL
Sbjct: 109016 TLAMTIAISMFKDCFTNNS*LQGL*KKLDNQVSFHIRL 108903
>gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula cDNA clone pGPOD-2B20 5' end,
mRNA sequence
Length = 698
Score = 59.3 bits (123), Expect = 2e-008
Identities = 26/51 (50%), Positives = 29/51 (56%)
Frame = +1 / +3
Query: 181 GXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXREY 333
G FYKP YEL Q LNMEM I+M RD+ MD I TD I +EY
Sbjct: 3 GFFYKPCNYELFVKQSLNMEMAIVMARDSGMDWIIHLDTDELIHPAGTQEY 155
Score = 35.4 bits (71), Expect = 0.36
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2 / -1
Query: 300 ISXXXXDXIHSSIPXHNNXHFHV*XLL 220
IS D IH+ IP H+N HFHV LL
Sbjct: 122 ISVQMDDPIHARIPCHDNCHFHVQRLL 42
Score = 32.7 bits (65), Expect = 2.4
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = -3 / -2
Query: 332 YSRXXXXXXXSSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL*XXP 180
YS SSV M S+ SL + ISMF C +S* GL* P
Sbjct: 154 YSCVPAGCISSSVSRWMIQSMPESLAMTIAISMFKDCFTNNS*LQGL*KKP 2
>gb|CG939320.1|CG939320 MBEEN74TFB mth2 Medicago truncatula genomic clone 39M4, DNA
sequence
Length = 880
Score = 58.8 bits (122), Expect = 3e-008
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = +1 / -3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET A FYKP YEL Q LNMEM I+M R
Sbjct: 434 SRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAR 324
Score = 46.0 bits (94), Expect = 2e-004
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / +3
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAAE 148
P HNN H H+ LL FV LVK C L+PN A+
Sbjct: 324 PCHNNSHLHIEGLLYKKFVIAWLVKEACQPCLVPNTAD 437
Score = 34.5 bits (69), Expect = 0.67
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3 / +1
Query: 275 SILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+I +L I IS+ C SS* GL* A VSFQ+RL
Sbjct: 310 TICHTLAITIAISILRDCFTKSS*LHGL*KKLASHVSFQIRL 435
Score = 33.6 bits (67), Expect = 1.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3 / -2
Query: 150 QPHLE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*N 272
QP+LE D+ + LQA LRT A ++G+ Y G N
Sbjct: 435 QPYLERDMAGKLLLQAMQLRTFCKAIPQYGDGYCYGKGMAN 313
Score = 32.2 bits (64), Expect = 3.3
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2 / -1
Query: 143 IYSAAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXG 262
+ SA FG R Q FTS ITN S W+ LL G
Sbjct: 442 VASAVFGTRHGWQASFTSHAITNFL*SNPSIWRWLLLWQG 323
>gb|CG949724.1|CG949724 MBEEN39TFB mth2 Medicago truncatula genomic clone 39G6, DNA
sequence
Length = 868
Score = 58.8 bits (122), Expect = 3e-008
Identities = 24/37 (64%), Positives = 25/37 (67%)
Frame = +1 / -3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXR 261
SRIWNET A FYKP YEL Q LNMEM I+M R
Sbjct: 434 SRIWNETWLASFFYKPCNYELFVKQSLNMEMAIVMAR 324
Score = 46.0 bits (94), Expect = 2e-004
Identities = 18/38 (47%), Positives = 21/38 (55%)
Frame = -2 / +3
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIPNAAE 148
P HNN H H+ LL FV LVK C L+PN A+
Sbjct: 324 PCHNNSHLHIEGLLYKKFVIAWLVKEACQPCLVPNTAD 437
Score = 34.5 bits (69), Expect = 0.67
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -3 / +1
Query: 275 SILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMRL 150
+I +L I IS+ C SS* GL* A VSFQ+RL
Sbjct: 310 TICHTLAITIAISILRDCFTKSS*LHGL*KKLASHVSFQIRL 435
Score = 33.6 bits (67), Expect = 1.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3 / -2
Query: 150 QPHLE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*N 272
QP+LE D+ + LQA LRT A ++G+ Y G N
Sbjct: 435 QPYLERDMAGKLLLQAMQLRTFCKAIPQYGDGYCYGKGMAN 313
Score = 32.2 bits (64), Expect = 3.3
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +2 / -1
Query: 143 IYSAAFGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXG 262
+ SA FG R Q FTS ITN S W+ LL G
Sbjct: 442 VASAVFGTRHGWQASFTSHAITNFL*SNPSIWRWLLLWQG 323
>gb|CG972015.1|CG972015 MBEGP34TR mth2 Medicago truncatula genomic clone 51F20, DNA
sequence
Length = 398
Score = 40.5 bits (82), Expect = 0.011
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1 / -3
Query: 187 FYKPXXYELXXXQXLNMEMXIIMXR 261
FYKP YEL Q LNMEM I+M R
Sbjct: 393 FYKPCNYELFVKQSLNMEMAIVMAR 319
Score = 32.2 bits (64), Expect = 3.3
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -2 / +1
Query: 261 PXHNNXHFHV*XLLXXXFVXXXLVK 187
P HNN H H+ LL FV LVK
Sbjct: 319 PCHNNSHLHIEGLLYKKFVIAWLVK 393
>gb|AW695452.2|AW695452 NF094H09ST1F1079 Developing stem Medicago truncatula cDNA clone
NF094H09ST 5', mRNA sequence
Length = 102
Score = 26.7 bits (52), Expect(2) = 0.032
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3 / +2
Query: 3 ICITGSTSAGLHQ 41
ICIT STSAGL Q
Sbjct: 32 ICITTSTSAGLEQ 70
Score = 25.8 bits (50), Expect(2) = 0.032
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3 / +3
Query: 45 LPWLYYHNV 71
LPW+YYH V
Sbjct: 75 LPWIYYHKV 101
>gb|CA918739.1|CA918739 EST636457 MTUS Medicago truncatula cDNA clone MTUS-2F1, mRNA
sequence
Length = 701
Score = 34.5 bits (69), Expect = 0.67
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3 / -3
Query: 39 QILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLES 146
Q LPW+ YH + G H F VE +A+ T ++++
Sbjct: 264 QKLPWIQYHELQGAGHLFPNVEEVSAEILKTQLMDT 157
>gb|CX537743.1|CX537743 s13dNF25A05GS033_458722 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 386
Score = 34.5 bits (69), Expect = 0.67
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3 / +3
Query: 39 QILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLES 146
Q LPW+ YH + G H F VE +A+ T ++++
Sbjct: 93 QKLPWIQYHELQGAGHLFPNVEEVSAEILKTQLMDT 200
>emb|CR301320.1| mte1-2I9FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 293
Score = 24.4 bits (47), Expect(2) = 6.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3 / -3
Query: 36 HQILPWLYYHNVI 74
H+I PWL YH ++
Sbjct: 288 HRIHPWLKYHALV 250
Score = 22.1 bits (42), Expect(2) = 6.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1 / -1
Query: 61 ITMSLVFHISFY*LKERLQSQLXPLFLNL 147
I ++++HISF K+ P LNL
Sbjct: 116 ILKTIMYHISFKSFKKFTTQSHSPSILNL 30
>gb|CG937573.1|CG937573 MBEIQ52TF mth2 Medicago truncatula genomic clone 64I7, DNA sequence
Length = 918
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / +2
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 809 QNLPWIHYHELPGSGHLFPNADG 877
>emb|CR334354.1| mte1-64P17RM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 502
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / -3
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 176 QNLPWVHYHELSGSGHLFPHADG 108
>emb|CR334629.1| mte1-64P16RM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 627
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / -2
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 176 QNLPWVHYHELSGSGHLFPHADG 108
>gb|AW329250.2|AW329250 N200468e rootphos(-) Medicago truncatula cDNA clone MHRP-17H12,
mRNA sequence
Length = 653
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / +1
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 451 QNLPWVHYHELSGSGHLFPHADG 519
>gb|AL384018.1|AL384018 MtBC18D05F1 MtBC Medicago truncatula cDNA clone MtBC18D05 T3, mRNA
sequence
Length = 397
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / +1
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 301 QNLPWIHYHELPGSGHLFPNADG 369
>gb|AW686828.2|AW686828 NF043G10NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF043G10NR 5', mRNA sequence
Length = 530
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / +1
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 145 QNLPWIHYHELPGSGHLFPNADG 213
>gb|CA921132.1|CA921132 EST638850 MTUS Medicago truncatula cDNA clone MTUS-36D3, mRNA
sequence
Length = 654
Score = 30.9 bits (61), Expect = 8.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3 / -2
Query: 39 QILPWLYYHNVIGVSHFFLLVEG 107
Q LPW++YH + G H F +G
Sbjct: 275 QNLPWVHYHELSGSGHLFPHADG 207
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 233,986,628
Number of Sequences: 392609
Number of extensions: 2209937
Number of successful extensions: 62004
Number of sequences better than 10.0: 25
length of database: 147,244,331
effective HSP length: 51
effective length of database: 127,221,272
effective search space used: 8269382680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)