TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX538323.1|CX538323 s13dNF80A11GS081_459898 Germinating ... 97 2e-035
gb|BI272689.1|BI272689 NF024D06FL1F1057 Developing flower M... 97 2e-035
gb|CA990448.1|CA990448 EST643956 GESD Medicago truncatula c... 97 6e-035
gb|CA990579.1|CA990579 EST644087 GESD Medicago truncatula c... 94 2e-034
gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula ... 89 4e-031
gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKIN... 86 1e-029
gb|AC146721.7| Medicago truncatula clone mth2-145n10, compl... 88 2e-029
gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower M... 90 2e-029
gb|BF650423.1|BF650423 NF088D03EC1F1028 Elicited cell cultu... 90 8e-029
gb|CB892201.1|CB892201 EST649170 KV3 Medicago truncatula cD... 89 1e-028
gb|BG581102.1|BG581102 EST482832 GVN Medicago truncatula cD... 89 1e-026
gb|BE319818.2|BE319818 NF022C11RT1F1082 Developing root Med... 92 6e-026
gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORK... 76 9e-025
gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula g... 89 2e-024
gb|CA919688.1|CA919688 EST637406 MTUS Medicago truncatula c... 88 6e-024
gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone m... 79 5e-023
gb|AC155898.15| Medicago truncatula clone mth2-109f1, compl... 77 7e-023
gb|AC158737.14| Medicago truncatula clone mth2-154f20, comp... 77 9e-023
gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula g... 62 4e-022
gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-... 80 1e-021
>gb|CX538323.1|CX538323 s13dNF80A11GS081_459898 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 661
Score = 97.3 bits (206), Expect(2) = 2e-035
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++ +FNP ACAWAYG+N FDL+ WRR CTE +H + +NE+ LW
Sbjct: 326 RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRRVKCTEEYHYWQNLNENRTLW 499
Score = 71.2 bits (149), Expect(2) = 2e-035
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL+++Y TKPLDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 512 LPPGLITYYSTTKPLDKSWHVLGLGYNPSISMDEINNAAV 631
>gb|BI272689.1|BI272689 NF024D06FL1F1057 Developing flower Medicago truncatula cDNA clone
NF024D06FL 5', mRNA sequence
Length = 724
Score = 97.3 bits (206), Expect(2) = 2e-035
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++ +FNP ACAWAYG+N FDL+ WRR CTE +H + +NE+ LW
Sbjct: 63 RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRRVKCTEEYHYWQNLNENRTLW 236
Score = 71.2 bits (149), Expect(2) = 2e-035
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL+++Y TKPLDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 249 LPPGLITYYSTTKPLDKSWHVLGLGYNPSISMDEINNAAV 368
>gb|CA990448.1|CA990448 EST643956 GESD Medicago truncatula cDNA clone GESD-28P9, mRNA
sequence
Length = 695
Score = 97.3 bits (206), Expect(2) = 6e-035
Identities = 31/58 (53%), Positives = 44/58 (75%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+NF+ P+++ +FNP ACAWAYG+N FDL+ WRR CTE +H + +NE+ LW
Sbjct: 42 RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRRVKCTEEYHYWQNLNENRTLW 215
Score = 69.3 bits (145), Expect(2) = 6e-035
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL+++Y TKPLDKSWHV+G GYNPSIS + I +AAV
Sbjct: 228 LPPGLITYYSTTKPLDKSWHVLGFGYNPSISMDEINNAAV 347
>gb|CA990579.1|CA990579 EST644087 GESD Medicago truncatula cDNA clone GESD-29M9, mRNA
sequence
Length = 679
Score = 93.6 bits (198), Expect(2) = 2e-034
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY +Y+N + P+++ +FNP ACAWAYG+N FDL+ WRR CTE +H + +NE+ LW
Sbjct: 176 RYAQYMNSSHPLIKAKFNPKACAWAYGMNFFDLDAWRRVKCTEEYHYWQNLNENRTLW 349
Score = 71.2 bits (149), Expect(2) = 2e-034
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL+++Y TKPLDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 362 LPPGLITYYSTTKPLDKSWHVLGLGYNPSISMDEINNAAV 481
>gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula cDNA clone pGESD4L15 5' end,
mRNA sequence
Length = 731
Score = 88.6 bits (187), Expect(2) = 4e-031
Identities = 28/58 (48%), Positives = 42/58 (72%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P + F+PNAC WAYG+N+FDL+ W++ T ++H++ +NED LW
Sbjct: 176 RFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHRWQNLNEDRVLW 349
Score = 65.2 bits (136), Expect(2) = 4e-031
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GLM+FYG T PL+KSWHV+GLGY+PSI I +AAV
Sbjct: 362 LPPGLMTFYGLTHPLNKSWHVLGLGYSPSIDRTEIENAAV 481
>gb|AC174296.3| Medicago truncatula clone mth2-72l21, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 114521
Score = 86.3 bits (182), Expect(2) = 1e-029
Identities = 27/51 (52%), Positives = 39/51 (76%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEM 159
RY +Y+NF+ P+++ +FNP ACAWAYG+N FDL+ WRR CTE +H + +
Sbjct: 50283 RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRRVKCTEEYHYWQNL 50435
Score = 71.2 bits (149), Expect(2) = 1e-029
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL+++Y TKPLDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 51120 LPPGLITYYSTTKPLDKSWHVLGLGYNPSISMDEINNAAV 51239
>gb|AC146721.7| Medicago truncatula clone mth2-145n10, complete sequence
Length = 133097
Score = 87.7 bits (185), Expect(2) = 2e-029
Identities = 26/48 (54%), Positives = 39/48 (81%)
Frame = -3 / -1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQY 168
RY +Y+NF+ P++++ FNP ACAW YG+N+FDL+ WRR+ CTE +H +
Sbjct: 47174 RYSQYVNFSHPLIKETFNPKACAWTYGMNIFDLDAWRREKCTEHYHYW 47031
Score = 68.9 bits (144), Expect(2) = 2e-029
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY TK LDKSWHV+GLGYNPSIS + I +AAV
Sbjct: 46573 LPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEINNAAV 46454
>gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower Medicago truncatula cDNA clone
NF012D10FL 5', mRNA sequence
Length = 685
Score = 90.0 bits (190), Expect(2) = 2e-029
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -3 / +3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P + F+PNAC WAYG+N+FDL+ W++ T ++H++ MNED LW
Sbjct: 402 RFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLKEWKKXDITGIYHKWQNMNEDRVLW 575
Score = 57.9 bits (120), Expect(2) = 2e-029
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSIS 30
L GLM+FYG T PL+KSWHV+GLGY+P+++
Sbjct: 588 LPPGLMTFYGLTHPLNKSWHVLGLGYSPTVN 680
>gb|BF650423.1|BF650423 NF088D03EC1F1028 Elicited cell culture Medicago truncatula cDNA
clone NF088D03EC 5', mRNA sequence
Length = 645
Score = 90.0 bits (190), Expect(2) = 8e-029
Identities = 27/58 (46%), Positives = 45/58 (77%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ KYLNF+ P++ + F+P+AC WA+G+NVFDL+ W++ T ++H++ ++NED LW
Sbjct: 58 RFDKYLNFSNPLISNNFSPDACGWAFGMNVFDLKEWKKRNITGIYHRWQDLNEDRTLW 231
Score = 56.1 bits (116), Expect(2) = 8e-029
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++FY T PLD+ WHV+GLGY+P+++ I +AAV
Sbjct: 244 LPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIDNAAV 363
>gb|CB892201.1|CB892201 EST649170 KV3 Medicago truncatula cDNA clone KV3-53D13, mRNA
sequence
Length = 822
Score = 89.0 bits (188), Expect(2) = 1e-028
Identities = 28/58 (48%), Positives = 41/58 (70%)
Frame = -3 / -3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
R+ YLNF+ P+V F+P AC WAYG+NVFDL W++ TE++H + ++N D +LW
Sbjct: 604 RFDSYLNFSNPLVAKNFDPRACGWAYGMNVFDLVEWKKQNITEVYHNWQKLNHDRQLW 431
Score = 57.4 bits (119), Expect(2) = 1e-028
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PL++SWHV+GLGYNP+++ + I AAV
Sbjct: 418 LPPGLITFWKRTFPLNRSWHVLGLGYNPNVNQKDIERAAV 299
>gb|BG581102.1|BG581102 EST482832 GVN Medicago truncatula cDNA clone pGVN-63F8 5' end, mRNA
sequence
Length = 593
Score = 89.0 bits (188), Expect(2) = 1e-026
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY KYLN++ P++R F+P+AC WA+G+NVFDL WR+ T ++H + E N D LW
Sbjct: 130 RYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVEWRKKNVTGIYHYWQEKNVDRTLW 303
Score = 49.2 bits (101), Expect(2) = 1e-026
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG T+PLD SWHV+G GY
Sbjct: 316 LPPGLLTFYGLTEPLDPSWHVLGFGY 393
>gb|BE319818.2|BE319818 NF022C11RT1F1082 Developing root Medicago truncatula cDNA clone
NF022C11RT 5', mRNA sequence
Length = 552
Score = 92.3 bits (195), Expect(2) = 6e-026
Identities = 29/59 (49%), Positives = 44/59 (74%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELWD 135
RY +Y+NF+ P+++ +FNP ACAWAYG+N FDL+ WRR CTE +H + +NE+ + +
Sbjct: 277 RYAQYMNFSHPLIKAKFNPKACAWAYGMNFFDLDAWRRVKCTEEYHYWQNLNENRNIME 453
Score = 43.7 bits (89), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMG 54
L GL+++Y TKPLDKSWHV G
Sbjct: 465 LPPGLITYYSTTKPLDKSWHVFG 533
>gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORKING DRAFT SEQUENCE
Length = 127679
Score = 75.8 bits (159), Expect(2) = 9e-025
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = -3 / -3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEM 159
R+ KYLNF+ P + F+PNAC WAYG+N+FDL+ W++ T ++H++ +
Sbjct: 87282 RFDKYLNFSNPHIAKNFDPNACGWAYGMNMFDLKVWKKKDITGIYHRWQNL 87130
Score = 65.2 bits (136), Expect(2) = 9e-025
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GLM+FYG T PL+KSWHV+GLGY+PSI I +AAV
Sbjct: 86781 LPPGLMTFYGLTHPLNKSWHVLGLGYSPSIDRTEIENAAV 86662
>gb|CG939602.1|CG939602 MBELA01TF mth2 Medicago truncatula genomic clone 78A1, DNA sequence
Length = 914
Score = 89.0 bits (188), Expect(2) = 2e-024
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY KYLN++ P++R F+P+AC WA+G+NVFDL WR+ T ++H + E N D LW
Sbjct: 613 RYHKYLNYSHPLIRAHFDPDACGWAFGMNVFDLVEWRKKNVTGIYHYWQEKNVDRTLW 786
Score = 43.2 bits (88), Expect(2) = 2e-024
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMG 54
L GL++FYG T+PLD SWHV+G
Sbjct: 799 LPPGLLTFYGLTEPLDPSWHVLG 867
>gb|CA919688.1|CA919688 EST637406 MTUS Medicago truncatula cDNA clone MTUS-16F9, mRNA
sequence
Length = 756
Score = 88.1 bits (186), Expect(2) = 6e-024
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = -3 / -3
Query: 323 WSRPRYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGE 144
W R + YLNF+ P++ + FNPN CAWAYG+N+FDLE WRR + +H ++ N +
Sbjct: 736 WMSKRLKSYLNFSHPLISENFNPNECAWAYGMNIFDLEAWRRTNISNKYHHWVAQNIKSD 557
Query: 143 L 141
L
Sbjct: 556 L 554
Score = 42.3 bits (86), Expect(2) = 6e-024
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+G+ +D WH++GLGY + + + + +A V
Sbjct: 532 LPPGLIAFHGHVHVIDPFWHMLGLGYQENTNVDDVENAGV 413
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
Length = 172016
Score = 79.0 bits (166), Expect(2) = 5e-023
Identities = 25/54 (46%), Positives = 38/54 (70%)
Frame = -3 / -3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNED 150
R+ +YLNF+ P++ F+P+AC WAYG+NVFDL W+R TE++H + + D
Sbjct: 52785 RFDRYLNFSNPLIAKNFDPHACGWAYGMNVFDLVQWKRQKITEVYHNWQNLVSD 52624
Score = 56.5 bits (117), Expect(2) = 5e-023
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = -3 / -2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PL+K+WHV+GLGYNP+++ + I AAV
Sbjct: 52267 LPPGLITFWKRTFPLNKAWHVLGLGYNPNVNQKDIDRAAV 52148
>gb|AC155898.15| Medicago truncatula clone mth2-109f1, complete sequence
Length = 93173
Score = 76.7 bits (161), Expect(2) = 7e-023
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3 / +1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEM 159
R+ YLNF+ P+V F+P AC WAYG+NVFDL W++ TE++H + ++
Sbjct: 45094 RFDSYLNFSNPLVAKNFDPRACGWAYGMNVFDLVEWKKQNITEVYHNWQKL 45246
Score = 57.4 bits (119), Expect(2) = 7e-023
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = -3 / +2
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PL++SWHV+GLGYNP+++ + I AAV
Sbjct: 45425 LPPGLITFWKRTFPLNRSWHVLGLGYNPNVNQKDIERAAV 45544
>gb|AC158737.14| Medicago truncatula clone mth2-154f20, complete sequence
Length = 114538
Score = 76.7 bits (161), Expect(2) = 9e-023
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3 / +2
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEM 159
R+ YLNF+ P+V F+P AC WAYG+NVFDL W++ TE++H + ++
Sbjct: 896 RFDSYLNFSNPLVAKNFDPRACGWAYGMNVFDLVEWKKQNITEVYHNWQKL 1048
Score = 57.4 bits (119), Expect(2) = 9e-023
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = -3 / +3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GL++F+ T PL++SWHV+GLGYNP+++ + I AAV
Sbjct: 1227 LPPGLITFWKRTFPLNRSWHVLGLGYNPNVNQKDIERAAV 1346
>gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula genomic clone 44G15, DNA
sequence
Length = 776
Score = 61.6 bits (128), Expect(3) = 4e-022
Identities = 23/40 (57%), Positives = 32/40 (80%)
Frame = -3 / +1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAV 3
L GLM+F+ +T PL++SWHV+GLGYNP ++ + I SAAV
Sbjct: 574 LPPGLMTFWKHTFPLNRSWHVLGLGYNPDVNQKDIESAAV 693
Score = 46.9 bits (96), Expect(3) = 4e-022
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -3 / +2
Query: 326 AWSRPRYRKYLNFTQPIVRDRFNPNACAWAYGV 228
A S R+ YLNF+ P+V F+P AC WAYG+
Sbjct: 245 AGSFHRFDGYLNFSNPLVAKNFDPRACGWAYGM 343
Score = 33.1 bits (66), Expect(3) = 4e-022
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -3 / +3
Query: 230 VNVFDLETWRRDGCTELFHQYMEM 159
+NVFDL W++ TE++H++ ++
Sbjct: 345 MNVFDLVEWKKQNITEVYHKWQKL 416
>gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-45a9, *** SEQUENCING IN
PROGRESS ***, 7 unordered pieces
Length = 125396
Score = 80.3 bits (169), Expect(2) = 1e-021
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = -3 / -1
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY YLN++ P++R F+ +AC WA+G+NVFDL WR++ T ++H + N D LW
Sbjct: 46814 RYHTYLNYSHPLIRAHFDLDACGWAFGMNVFDLVEWRKNNVTGIYHYWQAKNADRTLW 46641
Score = 80.3 bits (169), Expect(2) = 1e-021
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = -3 / -3
Query: 311 RYRKYLNFTQPIVRDRFNPNACAWAYGVNVFDLETWRRDGCTELFHQYMEMNEDGELW 138
RY YLN++ P++R F+ +AC WA+G+NVFDL WR++ T ++H + N D LW
Sbjct: 105828 RYHTYLNYSHPLIRAHFDLDACGWAFGMNVFDLVEWRKNNVTGIYHYWQAKNADRTLW 105655
Score = 41.8 bits (85), Expect(2) = 1e-021
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / -1
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG LD+SWHV+G GY
Sbjct: 46628 LPPGLLTFYGLI*KLDRSWHVLGFGY 46551
Score = 41.8 bits (85), Expect(2) = 1e-021
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = -3 / -3
Query: 122 LTAGLMSFYGNTKPLDKSWHVMGLGY 45
L GL++FYG LD+SWHV+G GY
Sbjct: 105642 LPPGLLTFYGLI*KLDRSWHVLGFGY 105565
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 363,056,449
Number of Sequences: 392609
Number of extensions: 5158081
Number of successful extensions: 149857
Number of sequences better than 1.0e-020: 26
length of database: 147,244,331
effective HSP length: 51
effective length of database: 127,221,272
effective search space used: 7251612504
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)