TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MAD56_a5f4.3.2
         (1520 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CT573055.1|  Medicago truncatula chromosome 5 clone mth2...    68   7e-021

>emb|CT573055.1| Medicago truncatula chromosome 5 clone mth2-75o19, WORKING DRAFT
             SEQUENCE
          Length = 121416

 Score = 68.0 bits (142), Expect(5) = 7e-021
 Identities = 21/52 (40%), Positives = 31/52 (59%)
 Frame = +3 / +3

                                                                 
Query: 1038  HLVAGLRVVDRACCGSGKLNAAVMCAQPNTTYCSDRDDYMFWDMLHPTQATN 1193
             H+ AG   V++ACC +G    + +C++ N   C D   Y+FWD  HPT+ TN
Sbjct: 27837 HIFAGFEEVEKACCSTGTFEMSYLCSEKNPLTCKDASKYVFWDAFHPTEKTN 27992




 Score = 46.9 bits (96), Expect(5) = 7e-021
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = +3 / +1

                                                        
Query: 261   RSSVPLMFVFGDSLVDVGNNNFLPPPAPRAASPYGIDFPSGTP 389
             ++ VP + VFGDS VD GNNN +         PYG DF  G P
Sbjct: 18583 KNHVPAVIVFGDSSVDSGNNNRIATLLKSNFKPYGRDFEGGRP 18711




 Score = 33.6 bits (67), Expect(5) = 7e-021
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3 / +1

                                            
Query: 390   GAVSGRFTNGYNLADLVARRLGFKMSPPAYL 482
             G  +GRF NG    D +A   G K + PAYL
Sbjct: 18703 GRPTGRFCNGRTPPDFIAEAFGVKRNIPAYL 18795




 Score = 32.7 bits (65), Expect(5) = 7e-021
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3 / +3

                                          
Query: 624   KARMSWGRCKLSSMVSRSLFLISAGGNDF 710
             K R+  G+ K + ++S +L+LIS G NDF
Sbjct: 20790 KLRVHVGKKKANEIISEALYLISLGTNDF 20876




 Score = 29.9 bits (59), Expect(5) = 7e-021
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3 / +3

                                                    
Query: 756   YISSMVSTYVQHIDALYKLGARRLGILDVPAIGCTPGSR 872
             Y   +V      +  L+ LGAR+L I  +  IGC P  R
Sbjct: 20931 YQDFLVDIAEDFVRKLHSLGARKLSITGLVPIGCLPLER 21047



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 1,512,558,825
Number of Sequences: 392609
Number of extensions: 21581740
Number of successful extensions: 105045
Number of sequences better than 1.0e-020: 2
length of database: 147,244,331
effective HSP length: 56
effective length of database: 125,258,227
effective search space used: 56366202150
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)