TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DW018142.1|DW018142 EST1227103 MTY Medicago truncatula c... 100 3e-020
gb|BI268948.1|BI268948 NF001H07IR1F1063 Irradiated Medicago... 99 7e-020
gb|BG451022.1|BG451022 NF096H08DT1F1074 Drought Medicago tr... 96 5e-019
gb|BF645856.1|BF645856 NF042F05EC1F1046 Elicited cell cultu... 96 7e-019
gb|BI273335.1|BI273335 NF100F10FL1F1090 Developing flower M... 96 7e-019
gb|AJ504364.1|AJ504364 AJ504364 MTAMP Medicago truncatula c... 82 1e-014
gb|AC148762.2| Medicago truncatula chromosome 7 BAC clone m... 70 4e-011
gb|AC166313.2| Medicago truncatula chromosome 7 BAC clone m... 70 4e-011
emb|CR332565.1| mte1-62G21FM1 BAC end, cultivar Jemalong A1... 60 5e-008
gb|BQ135636.1|BQ135636 NF008H06EC1F1060 Elicited cell cultu... 57 3e-007
gb|CX537315.1|CX537315 s13dNF13D11GS093_457844 Germinating ... 50 4e-005
gb|BQ146193.1|BQ146193 NF013D11GS1F1093 Germinating Seed Me... 35 2.1
gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone m... 34 2.8
>gb|DW018142.1|DW018142 EST1227103 MTY Medicago truncatula cDNA clone MTYB279, mRNA
sequence
Length = 707
Score = 100 bits (213), Expect = 3e-020
Identities = 44/71 (61%), Positives = 54/71 (76%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I +LIS+LQ L+P ++ S TK+L+ETC+YIK+LHREVDDLSDRLS L+AS D N
Sbjct: 223 ITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLASTDSN 402
Query: 534 SPGAEIIRSLL 502
S A IIRSLL
Sbjct: 403 SAQAAIIRSLL 435
>gb|BI268948.1|BI268948 NF001H07IR1F1063 Irradiated Medicago truncatula cDNA clone
NF001H07IR 5', mRNA sequence
Length = 723
Score = 99.1 bits (210), Expect = 7e-020
Identities = 43/71 (60%), Positives = 54/71 (76%)
Frame = -1 / +2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I +LIS+LQ L+P ++ S TK+L+ETC+YIK+LHREVDDLSDRLS L+AS D N
Sbjct: 353 ITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLASTDSN 532
Query: 534 SPGAEIIRSLL 502
S A II+SLL
Sbjct: 533 SAQAAIIKSLL 565
>gb|BG451022.1|BG451022 NF096H08DT1F1074 Drought Medicago truncatula cDNA clone NF096H08DT
5', mRNA sequence
Length = 699
Score = 96.4 bits (204), Expect = 5e-019
Identities = 39/71 (54%), Positives = 56/71 (78%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I EL+S+L+ L+P R R + S +K+L+ETC+YI++LHREVDDLS+RLS L+ ++D +
Sbjct: 442 IIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDAD 621
Query: 534 SPGAEIIRSLL 502
SP A IIRSL+
Sbjct: 622 SPXANIIRSLI 654
>gb|BF645856.1|BF645856 NF042F05EC1F1046 Elicited cell culture Medicago truncatula cDNA
clone NF042F05EC 5', mRNA sequence
Length = 650
Score = 95.9 bits (203), Expect = 7e-019
Identities = 39/71 (54%), Positives = 56/71 (78%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I EL+S+L+ L+P R R + S +K+L+ETC+YI++LHREVDDLS+RLS L+ ++D +
Sbjct: 297 IIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDAD 476
Query: 534 SPGAEIIRSLL 502
SP A IIRSL+
Sbjct: 477 SPEANIIRSLI 509
>gb|BI273335.1|BI273335 NF100F10FL1F1090 Developing flower Medicago truncatula cDNA clone
NF100F10FL 5', mRNA sequence
Length = 562
Score = 95.9 bits (203), Expect = 7e-019
Identities = 39/71 (54%), Positives = 56/71 (78%)
Frame = -1 / +3
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I EL+S+L+ L+P R R + S +K+L+ETC+YI++LHREVDDLS+RLS L+ ++D +
Sbjct: 255 IIELVSKLRQLVPEIRHRRSDKXSASKVLQETCNYIRNLHREVDDLSERLSQLLVTIDAD 434
Query: 534 SPGAEIIRSLL 502
SP A IIRSL+
Sbjct: 435 SPEANIIRSLI 467
>gb|AJ504364.1|AJ504364 AJ504364 MTAMP Medicago truncatula cDNA clone mtgmadc120046f06,
mRNA sequence
Length = 556
Score = 81.7 bits (172), Expect = 1e-014
Identities = 31/58 (53%), Positives = 48/58 (82%)
Frame = -1 / +2
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
I++L+S+LQ LLP R R + S +++L+ETC+YI++L+REVDDLS+RLS+L+A+ D
Sbjct: 287 IHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLATTD 460
>gb|AC148762.2| Medicago truncatula chromosome 7 BAC clone mth2-15p5, complete sequence
Length = 136116
Score = 70.3 bits (147), Expect = 4e-011
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -1 / +1
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
G Q +K+L+ETC+YI++L REVDDLS RLS L+A++D +S A IIRSLL
Sbjct: 106630 GCMQVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 106788
>gb|AC166313.2| Medicago truncatula chromosome 7 BAC clone mte1-4j13, complete
sequence
Length = 123373
Score = 70.3 bits (147), Expect = 4e-011
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -1 / -3
Query: 660 GGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHNSPGAEIIRSLL 502
G Q +K+L+ETC+YI++L REVDDLS RLS L+A++D +S A IIRSLL
Sbjct: 4310 GCMQVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLL 4152
>emb|CR332565.1| mte1-62G21FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 752
Score = 59.7 bits (124), Expect = 5e-008
Identities = 22/37 (59%), Positives = 34/37 (91%)
Frame = -1 / +1
Query: 651 QASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
Q S +++L+ETC+YI++L+REVDDLS+RLS+L+A+ D
Sbjct: 34 QVSASRVLQETCNYIRNLNREVDDLSERLSELLATTD 144
>gb|BQ135636.1|BQ135636 NF008H06EC1F1060 Elicited cell culture Medicago truncatula cDNA
clone NF008H06EC 5', mRNA sequence
Length = 868
Score = 57.4 bits (119), Expect = 3e-007
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = -1 / +1
Query: 714 INELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMASMDHN 535
I +L+S L L+ +AS K+L++TC+YIK+ HRE+DDLS+ L+ + ++D +
Sbjct: 358 IIQLVSELPQLVTEILHMRTDKASACKVLQQTCNYIKNSHRELDDLSETLAQQLVTLDAD 537
Query: 534 SPGAEII 514
A II
Sbjct: 538 ITYAIII 558
>gb|CX537315.1|CX537315 s13dNF13D11GS093_457844 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 325
Score = 50.1 bits (103), Expect = 4e-005
Identities = 18/35 (51%), Positives = 30/35 (85%)
Frame = -1 / +1
Query: 645 STTKLLKETCSYIKSLHREVDDLSDRLSDLMASMD 541
++ ++ E C+YI++L+REVDDLS+RLS+L+A+ D
Sbjct: 1 ASCRIRHEACNYIRNLNREVDDLSERLSELLATTD 105
>gb|BQ146193.1|BQ146193 NF013D11GS1F1093 Germinating Seed Medicago truncatula cDNA clone
NF013D11GS 5', mRNA sequence
Length = 342
Score = 34.5 bits (69), Expect = 2.1
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -1 / +3
Query: 636 KLLKETCSYIKSLHREVDDLS 574
++ E C+YI++L+REVDDLS
Sbjct: 9 RIRHEACNYIRNLNREVDDLS 71
>gb|AC150244.2| Medicago truncatula chromosome 7 BAC clone mth2-180p14, complete
sequence
Length = 115289
Score = 34.1 bits (68), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1 / +2
Query: 325 GYIQLLYAWVHTHTRQCAEIWRWR 396
GY LY +HT T QC+ +W ++
Sbjct: 17369 GYYHPLYTCLHTSTNQCSSVWTYK 17440
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 465,271,843
Number of Sequences: 392609
Number of extensions: 4700096
Number of successful extensions: 21943
Number of sequences better than 10.0: 17
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 25460775890
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)