TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE202402.1|BE202402 EST392851 KV1 Medicago truncatula cD... 83 1e-038
gb|AC137669.12| Medicago truncatula clone mth2-27m3, comple... 70 6e-036
gb|AJ846141.1|AJ846141 AJ846141 MtSC4 Medicago truncatula c... 72 8e-036
gb|CA921476.1|CA921476 EST639194 MTUS Medicago truncatula c... 71 7e-035
gb|AC151458.24| Medicago truncatula clone mth2-105a19, WORK... 68 2e-033
emb|CR335423.1| mte1-66I1FM1 BAC end, cultivar Jemalong A17... 68 3e-033
emb|CR308614.1| mte1-3M15FM1 BAC end, cultivar Jemalong A17... 68 3e-033
gb|AC152936.21| Medicago truncatula clone mth2-47n14, compl... 68 4e-032
gb|BE202392.1|BE202392 EST392841 KV1 Medicago truncatula cD... 80 1e-030
gb|AC125480.33| Medicago truncatula clone mth2-8c24, comple... 66 1e-029
gb|CF069243.1|CF069243 EST669964 MTUS Medicago truncatula c... 80 2e-029
gb|AL371374.1|AL371374 MtBA43G07R1 MtBA Medicago truncatula... 58 1e-028
gb|AL368351.1|AL368351 MtBA24A02F1 MtBA Medicago truncatula... 71 1e-028
gb|BF646993.1|BF646993 NF057C12EC1F1098 Elicited cell cultu... 69 1e-027
gb|AL369180.1|AL369180 MtBA29D06F1 MtBA Medicago truncatula... 83 6e-027
emb|CR936326.2| Medicago truncatula chromosome 5 clone mte1... 51 6e-026
gb|CG942230.1|CG942230 MBEKB52TFB mth2 Medicago truncatula ... 59 5e-024
gb|CG961823.1|CG961823 MBEJD76TR mth2 Medicago truncatula g... 59 1e-023
gb|BE319252.2|BE319252 NF022A12RT1F1085 Developing root Med... 83 6e-023
gb|AW574320.1|AW574320 EST316911 GVN Medicago truncatula cD... 54 2e-021
>gb|BE202402.1|BE202402 EST392851 KV1 Medicago truncatula cDNA clone pKV1-2G17, mRNA
sequence
Length = 542
Score = 83.1 bits (175), Expect(3) = 1e-038
Identities = 36/78 (46%), Positives = 44/78 (56%)
Frame = +2 / +1
Query: 71 MPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLG 250
+ M +E+ LHM G G+TSY NS Q VM K +LEE+ Y P + VADLG
Sbjct: 28 LAMAVEQVLHMNGGEGDTSYANNSTFQRMVMLTAKHILEESIMRLYCDTFPNCLKVADLG 207
Query: 251 CSSGPNTLRFISEVIGII 304
CSSGPN L S +I I
Sbjct: 208 CSSGPNALLVASNIINTI 261
Score = 71.2 bits (149), Expect(3) = 1e-038
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +2 / +1
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKD 595
E + PC+ SG PGSFY R+FP S+H FHS +S+HW S+ L+D
Sbjct: 388 EKGQKFSPCFFSGTPGSFYGRLFPDNSIHFFHSSYSLHWLSKTPDALQD 534
Score = 46.4 bits (95), Expect(3) = 1e-038
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 286 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 381
>gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete sequence
Length = 120323
Score = 69.8 bits (146), Expect(4) = 6e-036
Identities = 28/61 (45%), Positives = 42/61 (68%)
Frame = +2 / -2
Query: 146 IQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEH 325
+Q+KV+ K + +EA + Y P+ + +ADLGCSSGPNTL ISEVI ++ + C+EH
Sbjct: 41515 VQKKVISLTKEMRDEAIKNLYCKTFPKRLGIADLGCSSGPNTLLVISEVIKLVDKLCQEH 41336
Query: 326 D 328
+
Sbjct: 41335 N 41333
Score = 52.8 bits (109), Expect(4) = 6e-036
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +2 / -2
Query: 470 PCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
P + G PGSFY RIFP++++H HS +S+ W SQ
Sbjct: 41206 PIFFYGAPGSFYGRIFPTKTMHFIHSSYSLQWLSQ 41102
Score = 50.1 bits (103), Expect(4) = 6e-036
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2 / -2
Query: 326 DRRHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
+ H+ P+ Q F+NDL GNDFNN+F L+ +F + +
Sbjct: 41341 EHNHESPEYQVFMNDLQGNDFNNIFRLLDRFTEKL 41237
Score = 35.9 bits (72), Expect(4) = 6e-036
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2 / -2
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEK 157
M +E+ LHM G GETSY+ NS +Q K
Sbjct: 41701 MKVEQVLHMNGGIGETSYSNNSLLQVK 41621
>gb|AJ846141.1|AJ846141 AJ846141 MtSC4 Medicago truncatula cDNA clone MtC407C05N2, mRNA
sequence
Length = 687
Score = 72.1 bits (151), Expect(4) = 8e-036
Identities = 32/68 (47%), Positives = 37/68 (54%)
Frame = +2 / +3
Query: 101 MATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRF 280
M G G+TSY NS Q VM K +LEE+ Y P + VADLGCSSGPN L
Sbjct: 21 MNGGEGDTSYANNSTFQRMVMLTAKHILEESIMRLYCDTFPNCLKVADLGCSSGPNALLV 200
Query: 281 ISEVIGII 304
S +I I
Sbjct: 201 ASNIINTI 224
Score = 71.2 bits (149), Expect(4) = 8e-036
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +2 / +3
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKD 595
E + PC+ SG PGSFY R+FP S+H FHS +S+HW S+ L+D
Sbjct: 351 EKGQKFSPCFFSGTPGSFYGRLFPDNSIHFFHSSYSLHWLSKTPDALQD 497
Score = 46.4 bits (95), Expect(4) = 8e-036
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 249 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 344
Score = 24.0 bits (46), Expect(4) = 8e-036
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +2 / +3
Query: 791 DIYITKNIPPPMVEMFHQHFVKEF 862
+IY+T+ PP + + + + F ++F
Sbjct: 525 NIYLTRASPPAVQKTYFEQFQQDF 596
>gb|CA921476.1|CA921476 EST639194 MTUS Medicago truncatula cDNA clone MTUS-40G6, mRNA
sequence
Length = 640
Score = 71.2 bits (149), Expect(5) = 7e-035
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +2 / +2
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKD 595
E + PC+ SG PGSFY R+FP S+H FHS +S+HW S+ L+D
Sbjct: 389 EKGQKFSPCFFSGTPGSFYGRLFPDNSIHFFHSSYSLHWLSKTPDALQD 535
Score = 46.4 bits (95), Expect(5) = 7e-035
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +2
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 287 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 382
Score = 44.1 bits (90), Expect(5) = 7e-035
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +2 / +2
Query: 185 EEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
EE+ Y P + VADLGCSSGPN L S +I I
Sbjct: 143 EESIMRLYCDTFPNCLKVADLGCSSGPNALLVASNIINTI 262
Score = 41.8 bits (85), Expect(5) = 7e-035
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2 / +1
Query: 71 MPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVL 184
+ M +E+ LHM G G+TSY NS Q VM K +L
Sbjct: 28 LAMAVEQVLHMNGGEGDTSYANNSTFQRMVMLTAKHIL 141
Score = 23.5 bits (45), Expect(5) = 7e-035
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +2 / +2
Query: 791 DIYITKNIPPPMVEMFHQHFVKEF 862
+IY+T+ PP + + + + F ++F
Sbjct: 563 NIYLTRASPPAVQKTYFEQFRQDF 634
>gb|AC151458.24| Medicago truncatula clone mth2-105a19, WORKING DRAFT SEQUENCE
Length = 109595
Score = 68.4 bits (143), Expect(3) = 2e-033
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2 / +1
Query: 146 IQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKE 322
IQ++V+ K + EEA + Y + P ++ +ADLGCSSGPNTL +SE I ++ + C+E
Sbjct: 22711 IQQQVLSLTKSIREEAITSLYCSAYPNSLAIADLGCSSGPNTLLVVSEFIKVVEKLCRE 22887
Score = 63.8 bits (133), Expect(3) = 2e-021
Identities = 24/59 (40%), Positives = 41/59 (69%)
Frame = +2 / +1
Query: 146 IQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKE 322
IQ KV++ KP+ +EA + Y+ L +++ +ADLGCSSG NTL I ++I ++ + C++
Sbjct: 104650 IQRKVIYLTKPLRDEAITSMYNNTLSKSLTIADLGCSSGSNTLLVILDIIKVVEKLCRK 104826
Score = 63.8 bits (133), Expect(3) = 2e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2 / +1
Query: 446 GEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
GE + CYISG+PGSFY RIFP++S+H HS +S+ W S+
Sbjct: 22993 GETETEMDQCYISGVPGSFYGRIFPNQSLHFVHSSYSLMWLSK 23121
Score = 58.8 bits (122), Expect(3) = 1e-025
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +2 / +2
Query: 155 KVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKE 322
KV+ K + EEA Y+ LP ++ +ADLGCS GPNTL IS+ I ++ + C+E
Sbjct: 28430 KVISLTKLLREEAITNMYNKTLPISLAIADLGCSYGPNTLLAISDTIKVVEKICRE 28597
Score = 56.5 bits (117), Expect(3) = 1e-025
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +2 / +3
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
N + E + PCY G+PGSFY RIFP++S+H HS +S+ + S+
Sbjct: 28698 NLQAEMETEMVPCYFFGVPGSFYGRIFPNKSLHFVHSSYSLKFLSK 28835
Score = 50.1 bits (103), Expect(3) = 2e-033
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P+ + FLNDLPGNDFNN+F + F K +
Sbjct: 22894 HESPEYKVFLNDLPGNDFNNIFRSLDNFKKRL 22989
Score = 41.8 bits (85), Expect(3) = 2e-021
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H P+ +LNDLPGNDFN +F + F + +
Sbjct: 104833 HKSPEYMIYLNDLPGNDFNTIFKSLDIFKEKL 104928
Score = 40.9 bits (83), Expect(3) = 1e-025
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2 / +3
Query: 359 FLNDLPGNDFNNLFLLIQQFNKSI 430
FLNDLPGNDFNN+F + F +++
Sbjct: 28632 FLNDLPGNDFNNVFRSLDTFKENL 28703
Score = 36.3 bits (73), Expect(3) = 2e-021
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2 / +3
Query: 509 RIFPSESVHLFHSLFSVHWHSQ 574
RIFP +S+H HS +S+HW S+
Sbjct: 104994 RIFPLQSLHFVHSSYSLHWLSK 105059
>emb|CR335423.1| mte1-66I1FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 730
Score = 68.4 bits (143), Expect(3) = 3e-033
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2 / +1
Query: 146 IQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKE 322
IQ++V+ K + EEA + Y + P ++ +ADLGCSSGPNTL +SE I ++ + C+E
Sbjct: 79 IQQQVLSLTKSIREEAITSLYCSAYPNSLAIADLGCSSGPNTLLVVSEFIKVVEKLCRE 255
Score = 63.8 bits (133), Expect(3) = 3e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2 / +1
Query: 446 GEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
GE + CYISG+PGSFY RIFP++S+H HS +S+ W S+
Sbjct: 361 GETETEMDQCYISGVPGSFYGRIFPNQSLHFVHSSYSLMWLSK 489
Score = 50.1 bits (103), Expect(3) = 3e-033
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P+ + FLNDLPGNDFNN+F + F K +
Sbjct: 262 HESPEYKVFLNDLPGNDFNNIFRSLDNFKKRL 357
>emb|CR308614.1| mte1-3M15FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 728
Score = 68.4 bits (143), Expect(3) = 3e-033
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2 / +3
Query: 146 IQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKE 322
IQ++V+ K + EEA + Y + P ++ +ADLGCSSGPNTL +SE I ++ + C+E
Sbjct: 81 IQQQVLSLTKSIREEAITSLYCSAYPNSLAIADLGCSSGPNTLLVVSEFIKVVEKLCRE 257
Score = 63.8 bits (133), Expect(3) = 3e-033
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2 / +3
Query: 446 GEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
GE + CYISG+PGSFY RIFP++S+H HS +S+ W S+
Sbjct: 363 GETETEMDQCYISGVPGSFYGRIFPNQSLHFVHSSYSLMWLSK 491
Score = 50.1 bits (103), Expect(3) = 3e-033
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P+ + FLNDLPGNDFNN+F + F K +
Sbjct: 264 HESPEYKVFLNDLPGNDFNNIFRSLDNFKKRL 359
>gb|AC152936.21| Medicago truncatula clone mth2-47n14, complete sequence
Length = 130801
Score = 67.5 bits (141), Expect(3) = 4e-032
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2 / +3
Query: 137 NSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHC 316
N IQ KV+ K + +EA + Y LP+++ +ADLGCS GPNT ISE+I ++ + C
Sbjct: 42957 NLNIQRKVISLTKSLRDEAITSLYCNTLPRSLAIADLGCSFGPNTFLVISEIIKVVEKLC 43136
Query: 317 KE 322
+E
Sbjct: 43137 RE 43142
Score = 64.3 bits (134), Expect(3) = 4e-032
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +2 / +3
Query: 443 KGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
+ E + PCY SG+PGSFY+RIFP +S+H HS +S+ W S+
Sbjct: 43245 RNEMETEMGPCYFSGVPGSFYSRIFPDKSLHFVHSSYSLQWLSK 43376
Score = 46.4 bits (95), Expect(3) = 4e-032
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHKGE 451
H P+ + FLNDLPGNDFN++F+ + F + + + E
Sbjct: 43149 HKSPEYKVFLNDLPGNDFNDVFMSLDTFKEKLRNEMETE 43265
>gb|BE202392.1|BE202392 EST392841 KV1 Medicago truncatula cDNA clone pKV1-2G5, mRNA
sequence
Length = 474
Score = 80.3 bits (169), Expect(3) = 1e-030
Identities = 35/78 (44%), Positives = 43/78 (55%)
Frame = +2 / +1
Query: 71 MPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLG 250
+ M +E+ LHM G G+TSY NS Q VM K +LEE+ Y P + VADLG
Sbjct: 28 LAMAVEQVLHMNGGEGDTSYANNSTFQRMVMLTAKHILEESIMRLYCDTFPNCLKVADLG 207
Query: 251 CSSGPNTLRFISEVIGII 304
CSS PN L S +I I
Sbjct: 208 CSSSPNALLVASNIINTI 261
Score = 46.4 bits (95), Expect(3) = 1e-030
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVH 535
E + PC+ SG PGSFY R+FP S+H
Sbjct: 388 EKGQKFSPCFFSGTPGSFYGRLFPDNSIH 474
Score = 46.4 bits (95), Expect(3) = 1e-030
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 286 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 381
>gb|AC125480.33| Medicago truncatula clone mth2-8c24, complete sequence
Length = 119718
Score = 65.7 bits (137), Expect(3) = 1e-029
Identities = 26/65 (40%), Positives = 43/65 (66%)
Frame = +2 / -1
Query: 128 YTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGIIA 307
Y S IQ KV++ KP+ +EA + Y+ L +++ +ADLGCSSG NTL I ++I ++
Sbjct: 97878 YVPISCIQRKVIYLTKPLRDEAITSMYNNTLSKSLTIADLGCSSGSNTLLVILDIIKVVE 97699
Query: 308 RHCKE 322
+ C++
Sbjct: 97698 KLCRK 97684
Score = 61.6 bits (128), Expect(3) = 1e-029
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +2 / -1
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
E + PC+ SG+PGSF+ RIFP +S+H HS +S+HW S+
Sbjct: 97575 EMGTEMGPCFFSGVPGSFHGRIFPLQSLHFVHSSYSLHWLSK 97450
Score = 42.3 bits (86), Expect(3) = 1e-029
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2 / -1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H P+ +LNDLPGNDFN +F + F + +
Sbjct: 97677 HKSPEYMIYLNDLPGNDFNTIFTSLDIFKEKL 97582
>gb|CF069243.1|CF069243 EST669964 MTUS Medicago truncatula cDNA clone MTUS-18A11, mRNA
sequence
Length = 502
Score = 80.3 bits (169), Expect(3) = 2e-029
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +2 / +1
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M +E+ HM G G+TSY KNS +Q+K ++K ++ E Y P+++ +ADLGCS
Sbjct: 7 MDVEKVFHMTGGVGKTSYAKNSSLQKKASDKVKHIIIETVEELYIETTPKSIGIADLGCS 186
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL I ++ I
Sbjct: 187 SGPNTLSIIKDIFQTI 234
Score = 48.3 bits (99), Expect(3) = 2e-029
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2 / +1
Query: 467 PPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
P ++ G PGSFY R+FP+ +H HS +HW S+
Sbjct: 379 PSIFMGGYPGSFYGRLFPNSYLHFVHSSHCLHWLSR 486
Score = 40.5 bits (82), Expect(3) = 2e-029
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2 / +1
Query: 323 HDRRHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHK 445
H H + + + NDLP NDFN++F + +F K + ++ K
Sbjct: 247 HKIMHHSTEFRVYFNDLPTNDFNSIFKALPEFQKLLNQDRK 369
>gb|AL371374.1|AL371374 MtBA43G07R1 MtBA Medicago truncatula cDNA clone MtBA43G07 T7, mRNA
sequence
Length = 499
Score = 57.9 bits (120), Expect(4) = 1e-028
Identities = 26/56 (46%), Positives = 30/56 (53%)
Frame = +2 / -1
Query: 137 NSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
NS Q VM K +LEE+ Y P + VADLGCSSGPN L S +I I
Sbjct: 388 NSTFQRMVMLTAKHILEESIMRLYCDTFPNCLKVADLGCSSGPNALLVASNIINTI 221
Score = 49.2 bits (101), Expect(4) = 1e-028
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2 / -1
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVHLF 541
E + PC+ SG PGSFY R+FP S+H F
Sbjct: 94 EKGQKFSPCFFSGTPGSFYGRLFPDNSIHFF 2
Score = 46.4 bits (95), Expect(4) = 1e-028
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / -1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 196 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 101
Score = 30.4 bits (60), Expect(4) = 1e-028
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2 / -3
Query: 71 MPMTIERDLHMATGNGETSYTKNSRIQE 154
+ M +E+ LHM G G+TSY + I E
Sbjct: 455 LAMAVEQVLHMNGGEGDTSYAR*LHISE 372
>gb|AL368351.1|AL368351 MtBA24A02F1 MtBA Medicago truncatula cDNA clone MtBA24A02 T3, mRNA
sequence
Length = 495
Score = 71.2 bits (149), Expect(3) = 1e-028
Identities = 24/49 (48%), Positives = 32/49 (65%)
Frame = +2 / +2
Query: 449 EAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKD 595
E + PC+ SG PGSFY R+FP S+H FHS +S+HW S+ L+D
Sbjct: 260 EKGQKFSPCFFSGTPGSFYGRLFPDNSIHFFHSSYSLHWLSKTPDALQD 406
Score = 48.7 bits (100), Expect(3) = 1e-028
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +2 / +2
Query: 173 KPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
K +LEE+ Y P + VADLGCSSGPN L S +I I
Sbjct: 2 KHILEESIMRLYCDTFPNCLKVADLGCSSGPNALLVASNIINTI 133
Score = 46.4 bits (95), Expect(3) = 1e-028
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +2
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 158 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 253
>gb|BF646993.1|BF646993 NF057C12EC1F1098 Elicited cell culture Medicago truncatula cDNA
clone NF057C12EC 5', mRNA sequence
Length = 666
Score = 68.9 bits (144), Expect(3) = 1e-027
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = +2 / +1
Query: 116 GETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVI 295
G+TSY KNS +Q+K ++K ++ E Y P+++ +ADLGCSSGPNTL I ++
Sbjct: 1 GKTSYAKNSSLQKKASDKVKHIIIETVEELYIETTPKSIGIADLGCSSGPNTLSIIKDIF 180
Query: 296 GII 304
I
Sbjct: 181 QTI 189
Score = 53.8 bits (111), Expect(3) = 1e-027
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2 / +1
Query: 467 PPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQK 604
P ++ G PGSFY R+FP+ +H HS +HW S+ + D QK
Sbjct: 334 PSIFMGGYPGSFYGRLFPNSYLHFVHSSHCLHWLSRVPPTIYDEQK 471
Score = 40.5 bits (82), Expect(3) = 1e-027
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2 / +1
Query: 323 HDRRHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHK 445
H H + + + NDLP NDFN++F + +F K + ++ K
Sbjct: 202 HKIMHHSTEFRVYFNDLPTNDFNSIFKALPEFQKLLNQDRK 324
>gb|AL369180.1|AL369180 MtBA29D06F1 MtBA Medicago truncatula cDNA clone MtBA29D06 T3, mRNA
sequence
Length = 451
Score = 83.1 bits (175), Expect(3) = 6e-027
Identities = 36/78 (46%), Positives = 44/78 (56%)
Frame = +2 / +2
Query: 71 MPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLG 250
+ M +E+ LHM G G+TSY NS Q VM K +LEE+ Y P + VADLG
Sbjct: 35 LAMAVEQVLHMNGGEGDTSYANNSTFQRMVMLTAKHILEESIMRLYCDTFPNCLKVADLG 214
Query: 251 CSSGPNTLRFISEVIGII 304
CSSGPN L S +I I
Sbjct: 215 CSSGPNALLVASNIINTI 268
Score = 46.4 bits (95), Expect(3) = 6e-027
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +2
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 293 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 388
Score = 31.3 bits (62), Expect(3) = 6e-027
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2 / +2
Query: 449 EAAEALPPCYISGLPGSFY 505
E + PC+ SG PGSFY
Sbjct: 395 EKGQKFSPCFFSGTPGSFY 451
>emb|CR936326.2| Medicago truncatula chromosome 5 clone mte1-25j21, WORKING DRAFT
SEQUENCE
Length = 143745
Score = 51.0 bits (105), Expect(4) = 6e-026
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2 / -1
Query: 149 QEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
Q+K ++K ++ E Y P+++ +ADLGCSSGPNTL I ++ I
Sbjct: 61620 QKKASDKVKHIIIETVEELYIETTPKSIGIADLGCSSGPNTLSIIKDIFQTI 61465
Score = 48.3 bits (99), Expect(4) = 6e-026
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2 / -1
Query: 467 PPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
P ++ G PGSFY R+FP+ +H HS +HW S+
Sbjct: 61320 PSIFMGGYPGSFYGRLFPNSYLHFVHSSHCLHWLSR 61213
Score = 40.5 bits (82), Expect(4) = 6e-026
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2 / -1
Query: 323 HDRRHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHK 445
H H + + + NDLP NDFN++F + +F K + ++ K
Sbjct: 61452 HKIMHHSTEFRVYFNDLPTNDFNSIFKALPEFQKLLNQDRK 61330
Score = 34.5 bits (69), Expect(4) = 6e-026
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2 / -3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQ 151
M +E+ HM G G+TSY KNS +Q
Sbjct: 61786 MDVEKVFHMTGGVGKTSYAKNSSLQ 61712
>gb|CG942230.1|CG942230 MBEKB52TFB mth2 Medicago truncatula genomic clone 72I8, DNA
sequence
Length = 913
Score = 59.3 bits (123), Expect(3) = 5e-024
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2 / +1
Query: 443 KGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
+ E + PCY G+PGSFY RIFP S+H HS +S+ W S+
Sbjct: 199 RDEMETKIGPCYFYGVPGSFYGRIFPDNSLHFVHSSYSLQWLSK 330
Score = 46.4 bits (95), Expect(3) = 5e-024
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H P+ + FLNDLPGNDFNN+F + F + +
Sbjct: 103 HKSPEYKVFLNDLPGNDFNNVFKSLDTFKEKL 198
Score = 45.1 bits (92), Expect(3) = 5e-024
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2 / +1
Query: 227 TMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDRR 334
++ +ADLGCS GPNT+ ISE+I + + C+ H +
Sbjct: 1 SLAIADLGCSFGPNTMLVISEIIKGVEKLCQVHHHK 108
>gb|CG961823.1|CG961823 MBEJD76TR mth2 Medicago truncatula genomic clone 66N8, DNA sequence
Length = 916
Score = 59.3 bits (123), Expect(3) = 1e-023
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = +2 / +2
Query: 443 KGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQ 574
+ E + PCY G+PGSFY RIFP S+H HS +S+ W S+
Sbjct: 194 RDEMETKIGPCYFYGVPGSFYGRIFPDNSLHFVHSSYSLQWLSK 325
Score = 46.4 bits (95), Expect(3) = 1e-023
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2 / +2
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H P+ + FLNDLPGNDFNN+F + F + +
Sbjct: 98 HKSPEYKVFLNDLPGNDFNNVFKSLDTFKEKL 193
Score = 43.7 bits (89), Expect(3) = 1e-023
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2 / +2
Query: 236 VADLGCSSGPNTLRFISEVIGIIARHCKEHDRR 334
+ADLGCS GPNT+ ISE+I + + C+ H +
Sbjct: 5 IADLGCSFGPNTMLVISEIIKGVEKLCQVHHHK 103
>gb|BE319252.2|BE319252 NF022A12RT1F1085 Developing root Medicago truncatula cDNA clone
NF022A12RT 5', mRNA sequence
Length = 503
Score = 83.1 bits (175), Expect(2) = 6e-023
Identities = 36/78 (46%), Positives = 44/78 (56%)
Frame = +2 / +1
Query: 71 MPMTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLG 250
+ M +E+ LHM G G+TSY NS Q VM K +LEE+ Y P + VADLG
Sbjct: 82 LAMAVEQVLHMNGGEGDTSYANNSTFQRMVMLTAKHILEESIMRLYCDTFPNCLKVADLG 261
Query: 251 CSSGPNTLRFISEVIGII 304
CSSGPN L S +I I
Sbjct: 262 CSSGPNALLVASNIINTI 315
Score = 46.4 bits (95), Expect(2) = 6e-023
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H+ P QFFLNDL GNDFN F L+ F K +
Sbjct: 340 HESPMFQFFLNDLFGNDFNTTFKLLPDFIKRL 435
>gb|AW574320.1|AW574320 EST316911 GVN Medicago truncatula cDNA clone pGVN-53E18, mRNA
sequence
Length = 515
Score = 53.8 bits (111), Expect(3) = 2e-021
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2 / +1
Query: 467 PPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQK 604
P ++ G PGSFY R+FP+ +H HS +HW S+ + D QK
Sbjct: 292 PSIFMGGYPGSFYGRLFPNSYLHFVHSSHCLHWLSRVPPTIYDEQK 429
Score = 47.8 bits (98), Expect(3) = 2e-021
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2 / +1
Query: 167 QIKPVLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
++K ++ E Y P+++ +ADLGCSSGPNTL I ++ I
Sbjct: 10 KVKHIIIETVEELYIETTPKSIGIADLGCSSGPNTLSIIKDIFQTI 147
Score = 40.5 bits (82), Expect(3) = 2e-021
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2 / +1
Query: 323 HDRRHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHK 445
H H + + + NDLP NDFN++F + +F K + ++ K
Sbjct: 160 HKIMHHSTEFRVYFNDLPTNDFNSIFKALPEFQKLLNQDRK 282
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,216,212,499
Number of Sequences: 392609
Number of extensions: 18050020
Number of successful extensions: 81396
Number of sequences better than 1.0e-020: 21
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 42093030060
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)