TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7987759.3.1
(658 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC123575.10| Medicago truncatula clone mth1-31p6, comple... 102 2e-026
gb|BF004663.1|BF004663 EST433161 KV1 Medicago truncatula cD... 85 2e-024
gb|BF004662.1|BF004662 EST433160 KV1 Medicago truncatula cD... 86 4e-024
gb|BF644673.1|BF644673 NF018G05EC1F1039 Elicited cell cultu... 111 8e-024
gb|BF648191.1|BF648191 NF045B09EC1F1076 Elicited cell cultu... 111 8e-024
gb|BQ138658.1|BQ138658 NF005G04PH1F1035 Phoma-infected Medi... 111 8e-024
gb|CX523709.1|CX523709 s13dNF01A09AT069_336265 Aphid-Infect... 111 8e-024
gb|BE204994.1|BE204994 EST397670 KV0 Medicago truncatula cD... 83 3e-023
gb|DW017231.1|DW017231 EST1226192 MTY Medicago truncatula c... 109 4e-023
gb|BF003521.1|BF003521 EST432019 KV1 Medicago truncatula cD... 82 6e-023
gb|AW686010.1|AW686010 NF037D08NR1F1000 Nodulated root Medi... 87 7e-023
gb|AC140068.18| Medicago truncatula clone mth2-15l24, compl... 89 8e-023
gb|AA660357.1|AA660357 00228 MtRHE Medicago truncatula cDNA... 86 9e-023
gb|AW256878.1|AW256878 EST305015 KV2 Medicago truncatula cD... 91 2e-022
gb|CG963778.1|CG963778 MBEMB70TF mth2 Medicago truncatula g... 106 3e-022
gb|BE999236.1|BE999236 EST430959 GVSN Medicago truncatula c... 106 3e-022
gb|BG645635.1|BG645635 EST507254 KV3 Medicago truncatula cD... 105 7e-022
gb|AC171618.7| Medicago truncatula clone mth2-144n17, WORKI... 84 2e-021
gb|BQ165538.1|BQ165538 EST611407 KVKC Medicago truncatula c... 84 2e-021
gb|BF643844.1|BF643844 NF058G09EC1F1072 Elicited cell cultu... 102 5e-021
gb|BF645883.1|BF645883 NF042G06EC1F1051 Elicited cell cultu... 102 5e-021
gb|AA660507.1|AA660507 00393 MtRHE Medicago truncatula cDNA... 100 6e-021
>gb|AC123575.10| Medicago truncatula clone mth1-31p6, complete sequence
Length = 83007
Score = 102 bits (217), Expect(2) = 2e-026
Identities = 38/97 (39%), Positives = 59/97 (60%)
Frame = +2 / +2
Query: 44 LSKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGG 223
L+ ++ E Q+ + L A+ +WNH F ++ SM+LK +DLGIPD IH HG
Sbjct: 9761 LANRIQVASMESQNNEENVASNLLKAQSHVWNHIFNFINSMSLKCVVDLGIPDIIHNHGK 9940
Query: 224 SATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQ 334
I ++++ + +HPSK PC+ RLMR++T +G F Q
Sbjct: 9941 PMPISKLISSLPIHPSKKPCIHRLMRIMTHSGFFSQQ 10051
Score = 46.4 bits (95), Expect(2) = 2e-026
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3 / +2
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
D + F THG +WE A D+ F+ LF+ M D+ + N++V +C
Sbjct: 10214 DTTSFETTHGMLLWEYAACDSKFNNLFNESMANDAQLVSNLLVEKC 10351
>gb|BF004663.1|BF004663 EST433161 KV1 Medicago truncatula cDNA clone pKV1-18G10, mRNA
sequence
Length = 553
Score = 84.9 bits (179), Expect(2) = 2e-024
Identities = 29/71 (40%), Positives = 49/71 (69%)
Frame = +2 / +2
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ +WNH F ++ SM+LK +D GIPD IH +G ++ ++++ + +HPSKT + R
Sbjct: 2 LKAQSHIWNHIFNFINSMSLKCVVDSGIPDIIHNYGKPISLSKLISLLPIHPSKTCFIHR 181
Query: 293 LMRVLTVTGVF 325
LMR++T + +F
Sbjct: 182 LMRIMTHSSIF 214
Score = 50.1 bits (103), Expect(2) = 2e-024
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3 / +2
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
DP+ F TH +WE A D+ FS LF+ M +D+ + N+++ +C
Sbjct: 386 DPTTFQTTHRMSLWEYVACDSKFSNLFNESMASDTRLVTNLLIEKC 523
>gb|BF004662.1|BF004662 EST433160 KV1 Medicago truncatula cDNA clone pKV1-18G10, mRNA
sequence
Length = 553
Score = 85.8 bits (181), Expect(2) = 4e-024
Identities = 30/71 (42%), Positives = 49/71 (69%)
Frame = +2 / +1
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ +WNH F ++ SM+LK +DLGIPD IH +G ++ ++++ + +HPSKT + R
Sbjct: 4 LKAQSHIWNHIFNFINSMSLKCVVDLGIPDIIHNYGKPISLSKLISLLPIHPSKTCFIHR 183
Query: 293 LMRVLTVTGVF 325
LMR++T + F
Sbjct: 184 LMRIMTHSSFF 216
Score = 48.3 bits (99), Expect(2) = 4e-024
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3 / +1
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
DP+ F TH +WE A D+ FS LF+ M +D+ + N+++ +C
Sbjct: 388 DPTTFETTHRMLLWEYVACDSKFSNLFNESMASDTRLVTNLLIEKC 525
>gb|BF644673.1|BF644673 NF018G05EC1F1039 Elicited cell culture Medicago truncatula cDNA
clone NF018G05EC 5', mRNA sequence
Length = 681
Score = 111 bits (238), Expect = 8e-024
Identities = 48/121 (39%), Positives = 72/121 (59%)
Frame = +2 / +1
Query: 47 SKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGS 226
+K+QK I T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG
Sbjct: 34 NKQQKERIEMAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP 213
Query: 227 ATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLL 406
T+ ++ + + LHPSK L R +R+LT G F G ++E+ Y+LTP S+LL
Sbjct: 214 MTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 393
Query: 407 V 409
+
Sbjct: 394 I 396
>gb|BF648191.1|BF648191 NF045B09EC1F1076 Elicited cell culture Medicago truncatula cDNA
clone NF045B09EC 5', mRNA sequence
Length = 626
Score = 111 bits (238), Expect = 8e-024
Identities = 48/121 (39%), Positives = 72/121 (59%)
Frame = +2 / +2
Query: 47 SKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGS 226
+K+QK I T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG
Sbjct: 32 NKQQKERIEMAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP 211
Query: 227 ATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLL 406
T+ ++ + + LHPSK L R +R+LT G F G ++E+ Y+LTP S+LL
Sbjct: 212 MTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 391
Query: 407 V 409
+
Sbjct: 392 I 394
>gb|BQ138658.1|BQ138658 NF005G04PH1F1035 Phoma-infected Medicago truncatula cDNA clone
NF005G04PH 5', mRNA sequence
Length = 680
Score = 111 bits (238), Expect = 8e-024
Identities = 48/121 (39%), Positives = 72/121 (59%)
Frame = +2 / +1
Query: 47 SKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGS 226
+K+QK I T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG
Sbjct: 103 NKQQKERIEMAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP 282
Query: 227 ATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLL 406
T+ ++ + + LHPSK L R +R+LT G F G ++E+ Y+LTP S+LL
Sbjct: 283 MTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 462
Query: 407 V 409
+
Sbjct: 463 I 465
>gb|CX523709.1|CX523709 s13dNF01A09AT069_336265 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 484
Score = 111 bits (238), Expect = 8e-024
Identities = 48/121 (39%), Positives = 72/121 (59%)
Frame = +2 / +3
Query: 47 SKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGS 226
+K+QK I T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG
Sbjct: 27 NKQQKERIEMAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP 206
Query: 227 ATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLL 406
T+ ++ + + LHPSK L R +R+LT G F G ++E+ Y+LTP S+LL
Sbjct: 207 MTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 386
Query: 407 V 409
+
Sbjct: 387 I 389
>gb|BE204994.1|BE204994 EST397670 KV0 Medicago truncatula cDNA clone pKV0-20C3, mRNA
sequence
Length = 566
Score = 82.6 bits (174), Expect(2) = 3e-023
Identities = 29/71 (40%), Positives = 47/71 (66%)
Frame = +2 / +1
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ +WNH F ++ SM LK +DL IPD IH +G ++ ++++ + +HPSKT + R
Sbjct: 19 LKAQSHIWNHIFNFINSMCLKCVVDLSIPDIIHNYGKPISLSKLISLLPIHPSKTCFIHR 198
Query: 293 LMRVLTVTGVF 325
LMR++T + F
Sbjct: 199 LMRIMTHSSFF 231
Score = 48.3 bits (99), Expect(2) = 3e-023
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3 / +1
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
DP+ F TH +WE A D+ FS LF+ M +D+ + N+++ +C
Sbjct: 403 DPTTFETTHTMLLWEYVACDSKFSNLFNESMASDTRLVTNLLIEKC 540
>gb|DW017231.1|DW017231 EST1226192 MTY Medicago truncatula cDNA clone MTYAR09, mRNA
sequence
Length = 834
Score = 109 bits (233), Expect = 4e-023
Identities = 47/121 (38%), Positives = 71/121 (58%)
Frame = +2 / +2
Query: 47 SKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGS 226
+K+QK I T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG
Sbjct: 110 NKQQKERIEMAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP 289
Query: 227 ATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLL 406
T+ ++ + + LHPSK L R +R+L G F G ++E+ Y+LTP S+LL
Sbjct: 290 MTLSELASSLKLHPSKVNILHRFLRLLAHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 469
Query: 407 V 409
+
Sbjct: 470 I 472
>gb|BF003521.1|BF003521 EST432019 KV1 Medicago truncatula cDNA clone pKV1-7K7, mRNA
sequence
Length = 587
Score = 81.7 bits (172), Expect(2) = 6e-023
Identities = 28/64 (43%), Positives = 45/64 (70%)
Frame = +2 / +3
Query: 134 WNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRLMRVLTV 313
WNH F ++ SM+LK +DLGIPD IH +G ++ ++++ + +HPSKT + RLMR++T
Sbjct: 48 WNHIFNFINSMSLKCVVDLGIPDIIHNYGKPISLSKLISLLPIHPSKTCFIHRLMRIMTH 227
Query: 314 TGVF 325
+ F
Sbjct: 228 SSFF 239
Score = 48.3 bits (99), Expect(2) = 6e-023
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3 / +3
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
DP+ F TH +WE A D+ FS LF+ M +D+ + N+++ +C
Sbjct: 411 DPTTFETTHRMLLWEYVACDSKFSNLFNESMASDTRLVTNLLIEKC 548
>gb|AW686010.1|AW686010 NF037D08NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF037D08NR 5', mRNA sequence
Length = 660
Score = 86.8 bits (183), Expect(2) = 7e-023
Identities = 33/91 (36%), Positives = 54/91 (59%)
Frame = +2 / +2
Query: 53 EQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSAT 232
E K +S + L A+ +WNH F ++ SM+LK +DLGIPD IH +G
Sbjct: 11 EFK*QVSMESQNIEQVASNLLKAQSHVWNHMFNFINSMSLKCVVDLGIPDIIHNYGKPIP 190
Query: 233 IPQIVTRITLHPSKTPCLRRLMRVLTVTGVF 325
+ ++++ +++HPSK + RLMR++T +G F
Sbjct: 191 LSKLISSLSIHPSKNHGIHRLMRIMTHSGFF 283
Score = 43.2 bits (88), Expect(2) = 7e-023
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3 / +2
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
D + F THG WE A D+ + LF+ M D+ + +++V +C
Sbjct: 455 DTNTFETTHGMSTWEYAARDSEINNLFNESMANDTRLVSDLLVEKC 592
>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence
Length = 111620
Score = 89.0 bits (188), Expect(2) = 8e-023
Identities = 34/92 (36%), Positives = 56/92 (60%)
Frame = +2 / -2
Query: 50 KEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSA 229
K+ +L E Q + L A+ +WNH F ++ SM+LK +DLGIPD IH +G
Sbjct: 28417 KKIQLASMESQKNEENVTSNLLKAQSHIWNHIFNFINSMSLKCVVDLGIPDIIHNYGKPI 28238
Query: 230 TIPQIVTRITLHPSKTPCLRRLMRVLTVTGVF 325
++ ++++ + +HPSKT + RLMR++T + F
Sbjct: 28237 SLSKLISLLPIHPSKTCFIHRLMRIMTHSSFF 28142
Score = 48.3 bits (99), Expect(2) = 8e-023
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3 / -2
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
DP+ F TH +WE A D+ FS LF+ M +D+ + N+++ +C
Sbjct: 27970 DPTTFETTHRMLLWEYVACDSKFSNLFNESMASDTRLVTNLLIEKC 27833
>gb|AA660357.1|AA660357 00228 MtRHE Medicago truncatula cDNA 5' similar to O-methyl
transferase, mRNA sequence
Length = 597
Score = 86.3 bits (182), Expect(2) = 9e-023
Identities = 30/71 (42%), Positives = 49/71 (69%)
Frame = +2 / +3
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ +WNH F ++ SM+LK +DLGIPD IH +G + ++++ +++HPSK + R
Sbjct: 60 LKAQSHVWNHMFNFINSMSLKCVVDLGIPDIIHNYGKPIPLSKLISSLSIHPSKNHGIHR 239
Query: 293 LMRVLTVTGVF 325
LMR++T +G F
Sbjct: 240 LMRIMTHSGFF 272
Score = 43.2 bits (88), Expect(2) = 9e-023
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3 / +3
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
D + F THG WE A D+ + LF+ M D+ I +++V +C
Sbjct: 444 DTNTFETTHGMSTWEYAARDSEINNLFNESMANDTRLISDLLVXKC 581
>gb|AW256878.1|AW256878 EST305015 KV2 Medicago truncatula cDNA clone KV2-6K7, mRNA sequence
Length = 492
Score = 91.3 bits (193), Expect(2) = 2e-022
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = +2 / +2
Query: 137 NHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRLMRVLTVT 316
NH F ++ SM+LK +DLGIPD IH HG I ++++ + +HPSK PC+ RLMR++T +
Sbjct: 14 NHIFNFINSMSLKCVVDLGIPDIIHNHGKPMPISKLISSLPIHPSKKPCIHRLMRIMTHS 193
Query: 317 GVFGTQ 334
G F Q
Sbjct: 194 GFFSQQ 211
Score = 36.8 bits (74), Expect(2) = 2e-022
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3 / +2
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFI 629
D + F THG +WE A D+ F+ LF+ M D+ +
Sbjct: 374 DTTSFETTHGMLLWEYAACDSKFNNLFNESMANDAQLV 487
>gb|CG963778.1|CG963778 MBEMB70TF mth2 Medicago truncatula genomic clone 84K20, DNA
sequence
Length = 889
Score = 106 bits (227), Expect = 3e-022
Identities = 46/118 (38%), Positives = 69/118 (58%)
Frame = +2 / -3
Query: 47 SKEQKLTISEQQHTASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGS 226
+K+QK I T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG
Sbjct: 356 NKQQKERIEMAFSTNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKP 177
Query: 227 ATIPQIVTRITLHPSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASR 400
T+ ++ + + LHPSK L R +R+LT G F G ++E+ Y+LTP S+
Sbjct: 176 MTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSK 3
>gb|BE999236.1|BE999236 EST430959 GVSN Medicago truncatula cDNA clone pGVSN-15J21, mRNA
sequence
Length = 445
Score = 106 bits (227), Expect = 3e-022
Identities = 44/108 (40%), Positives = 66/108 (61%)
Frame = +2 / +2
Query: 86 TASSEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLH 265
T SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG T+ ++ + + LH
Sbjct: 29 TNGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLH 208
Query: 266 PSKTPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLLV 409
PSK L R +R+LT G F G ++E+ Y+LTP S+LL+
Sbjct: 209 PSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLI 352
>gb|BG645635.1|BG645635 EST507254 KV3 Medicago truncatula cDNA clone pKV3-46J20 5' end,
mRNA sequence
Length = 799
Score = 105 bits (224), Expect = 7e-022
Identities = 43/105 (40%), Positives = 65/105 (61%)
Frame = +2 / +2
Query: 95 SEQQVALDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSK 274
SE+ A++ L+ H + +V SMALK+A++LGI DAIH HG T+ ++ + + LHPSK
Sbjct: 23 SEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSK 202
Query: 275 TPCLRRLMRVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLLV 409
L R +R+LT G F G ++E+ Y+LTP S+LL+
Sbjct: 203 VNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLI 337
>gb|AC171618.7| Medicago truncatula clone mth2-144n17, WORKING DRAFT SEQUENCE, 24
unordered pieces
Length = 79251
Score = 84.5 bits (178), Expect(3) = 2e-021
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +2 / +1
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ Q++NH F ++ SM+LK A++L IPD IH +G + ++++ + +HPSKT + R
Sbjct: 51022 LQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIHR 51201
Query: 293 LMRVLTVTGVFGTQE 337
LMRVLT +G F +
Sbjct: 51202 LMRVLTHSGFFNVSK 51246
Score = 29.0 bits (57), Expect(3) = 2e-021
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3 / +1
Query: 540 HGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
+G W+ HD + LF+ M ++ +VV+ +C
Sbjct: 51424 NGVAFWDYAGHDPNHNNLFNEAMACETRLASSVVMGKC 51537
Score = 27.2 bits (53), Expect(3) = 2e-021
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3 / +1
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDP 521
++ L+ V+L PI + L W++++ P P
Sbjct: 51313 SMTSLLHVILGPILSKPWYQLSNWYKNDDPSP 51408
>gb|BQ165538.1|BQ165538 EST611407 KVKC Medicago truncatula cDNA clone pKVKC-10A2, mRNA
sequence
Length = 826
Score = 84.5 bits (178), Expect(3) = 2e-021
Identities = 32/75 (42%), Positives = 51/75 (68%)
Frame = +2 / +2
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ Q++NH F ++ SM+LK A++L IPD IH +G + ++++ + +HPSKT + R
Sbjct: 218 LQAQTQVFNHIFSFINSMSLKCAIELCIPDVIHNYGQPIPLSKLISLLPIHPSKTGDIHR 397
Query: 293 LMRVLTVTGVFGTQE 337
LMRVLT +G F +
Sbjct: 398 LMRVLTHSGFFNVSK 442
Score = 29.0 bits (57), Expect(3) = 2e-021
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3 / +2
Query: 540 HGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
+G W+ HD + LF+ M ++ +VV+ +C
Sbjct: 620 NGVAFWDYAGHDPNHNNLFNEAMACETRLASSVVMGKC 733
Score = 27.2 bits (53), Expect(3) = 2e-021
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3 / +2
Query: 426 NVNPLMKVMLRPIFVSSFLDLRGWFQHEMPDP 521
++ L+ V+L PI + L W++++ P P
Sbjct: 509 SMTSLLHVILGPILSKPWYQLSNWYKNDDPSP 604
>gb|BF643844.1|BF643844 NF058G09EC1F1072 Elicited cell culture Medicago truncatula cDNA
clone NF058G09EC 5', mRNA sequence
Length = 584
Score = 102 bits (218), Expect = 5e-021
Identities = 41/97 (42%), Positives = 62/97 (63%)
Frame = +2 / +2
Query: 119 AELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRLM 298
A++ L+ H + +V SMALK+A++LGI DAIH HG T+ ++ + + LHPSK L R +
Sbjct: 86 AQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFL 265
Query: 299 RVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLLV 409
R+LT G F G ++E+ Y+LTP S+LL+
Sbjct: 266 RLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLI 376
>gb|BF645883.1|BF645883 NF042G06EC1F1051 Elicited cell culture Medicago truncatula cDNA
clone NF042G06EC 5', mRNA sequence
Length = 508
Score = 102 bits (218), Expect = 5e-021
Identities = 41/97 (42%), Positives = 62/97 (63%)
Frame = +2 / +2
Query: 119 AELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRRLM 298
A++ L+ H + +V SMALK+A++LGI DAIH HG T+ ++ + + LHPSK L R +
Sbjct: 65 AQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFL 244
Query: 299 RVLTVTGVFGTQEPHDDGGGCDDELVYTLTPASRLLV 409
R+LT G F G ++E+ Y+LTP S+LL+
Sbjct: 245 RLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLI 355
>gb|AA660507.1|AA660507 00393 MtRHE Medicago truncatula cDNA 5' similar to
methyltransferase, mRNA sequence
Length = 512
Score = 100 bits (212), Expect(2) = 6e-021
Identities = 35/74 (47%), Positives = 51/74 (68%)
Frame = +2 / +2
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
L A+ +WNH F ++ SM+LK +DLGIPD IH HG I ++++ + +HPSK PC+ R
Sbjct: 32 LKAQSHVWNHIFNFINSMSLKCVVDLGIPDIIHNHGKPMPISKLISSLPIHPSKKPCIHR 211
Query: 293 LMRVLTVTGVFGTQ 334
LMR++T +G F Q
Sbjct: 212 LMRIMTHSGFFSQQ 253
Score = 23.1 bits (44), Expect(2) = 6e-021
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3 / +3
Query: 516 DPSPFNVTHGRDIWELDA 569
D + F THG +WE A
Sbjct: 417 DTTSFETTHGMLLWEYAA 470
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 476,036,204
Number of Sequences: 392609
Number of extensions: 5262966
Number of successful extensions: 33288
Number of sequences better than 1.0e-020: 27
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20671124980
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)