TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705280.3.1
(980 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone m... 40 1e-018
gb|CG959445.1|CG959445 MBEHC09TFB mth2 Medicago truncatula ... 70 4e-011
gb|CG955056.1|CG955056 MBEFQ86TR mth2 Medicago truncatula g... 56 1e-008
gb|CG930107.1|CG930107 MBEEM31TFB mth2 Medicago truncatula ... 56 1e-008
gb|AC147501.9| Medicago truncatula clone mth2-12n2, complet... 37 2e-005
gb|BM780255.1|BM780255 EST590831 KV2 Medicago truncatula cD... 42 4e-005
gb|BF644766.1|BF644766 NF022E05EC1F1038 Elicited cell cultu... 42 4e-005
gb|BE941874.1|BE941874 EST421453 MGHG Medicago truncatula c... 42 4e-005
gb|BF520302.1|BF520302 EST457772 DSIL Medicago truncatula c... 41 6e-004
gb|CG922766.1|CG922766 MBEIC52TF mth2 Medicago truncatula g... 34 0.001
gb|CG961657.1|CG961657 MBENP51TF mth2 Medicago truncatula g... 34 0.001
gb|CG938692.1|CG938692 MBEDM19TRC mth2 Medicago truncatula ... 34 0.001
gb|CG941190.1|CG941190 MBEJV36TF mth2 Medicago truncatula g... 38 0.003
emb|CR484202.1| mth2-151P17FM1 BAC end, cultivar Jemalong A... 38 0.007
emb|CR512310.1| mth4-28J14RM1 BAC end, cultivar Jemalong A1... 37 0.013
gb|BF650159.1|BF650159 NF088H02EC1F1026 Elicited cell cultu... 35 0.023
gb|BE203160.1|BE203160 EST403182 KV1 Medicago truncatula cD... 40 0.050
gb|BH001411.1|BH001411 T122553b Medicago truncatula MT-H2 B... 32 0.076
emb|CR488576.1| mth2-157F22FM1 BAC end, cultivar Jemalong A... 38 0.18
emb|CR297361.1| mte1-14K8FM1 BAC end, cultivar Jemalong A17... 37 0.63
emb|CR931730.1| Medicago truncatula chromosome 5 clone mth... 37 0.63
gb|AL378333.1|AL378333 MtBB37E07F1 MtBB Medicago truncatula... 33 0.89
gb|AL385929.1|AL385929 MtBC31E11F1 MtBC Medicago truncatula... 33 0.89
gb|CA991420.1|CA991420 EST644928 GESD Medicago truncatula c... 33 0.89
gb|AC175028.4| Medicago truncatula clone mth2-7e22, WORKING... 28 1.3
gb|CB893607.1|CB893607 EST646399 HOGA Medicago truncatula c... 35 2.2
emb|CR967879.1| mth4-35H12FM1 BAC end, cultivar Jemalong A1... 34 3.1
gb|AW687022.1|AW687022 NF005B03RT1F1027 Developing root Med... 34 3.1
gb|AW686917.2|AW686917 NF004A04RT1F1024 Developing root Med... 34 3.1
gb|AJ497449.1|AJ497449 AJ497449 MTFLOW Medicago truncatula ... 34 4.2
gb|BH001420.1|BH001420 T122562b Medicago truncatula MT-H2 B... 27 6.7
emb|CR315099.1| mte1-39M11RM1 BAC end, cultivar Jemalong A1... 33 7.3
gb|BQ137863.1|BQ137863 NF033G07RT1F1052 Developing root Med... 33 7.3
gb|AC140774.7| Medicago truncatula clone mth2-5e11, complet... 33 7.3
gb|AW684571.1|AW684571 NF018D11NR1F1000 Nodulated root Medi... 33 8.0
gb|BG647271.1|BG647271 EST508890 HOGA Medicago truncatula c... 33 8.0
gb|CB894639.1|CB894639 EST647431 HOGA Medicago truncatula c... 33 8.0
gb|AC130652.27| Medicago truncatula clone mth1-1k12, comple... 31 8.5
gb|CA922654.1|CA922654 EST640372 MTUS Medicago truncatula c... 26 8.9
gb|BG645881.1|BG645881 EST507500 KV3 Medicago truncatula cD... 26 8.9
gb|CX530226.1|CX530226 s13dNF53H11MJ093_246487 Methyl Jasmo... 26 8.9
gb|CX518171.1|CX518171 s13dNF27H06VI048_422055 Virus-Infect... 26 9.0
gb|BE319798.2|BE319798 NF021G12RT1F1088 Developing root Med... 26 9.1
gb|BE319686.2|BE319686 NF017G04RT1F1024 Developing root Med... 26 9.4
>gb|AC148971.3| Medicago truncatula chromosome 2 BAC clone mth2-79e23, complete
sequence
Length = 108394
Score = 39.9 bits (81), Expect(5) = 1e-018
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1 / -3
Query: 637 CYNSSNGIGYRCNCSSGFEGNPYL 708
CYN GY C C G+ GNPYL
Sbjct: 45566 CYNPPEKSGYLCRCLHGYRGNPYL 45495
Score = 37.6 bits (76), Expect(2) = 0.002
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / -3
Query: 772 CSNTIGGFQCTCPAGMSGDGLKEGSGCN 855
C+N G +QC CPA G+G G+ C+
Sbjct: 44858 CTNLPGSYQCLCPAEYEGNGKMNGTKCS 44775
Score = 34.8 bits (70), Expect(5) = 1e-018
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1 / -3
Query: 430 NSGIDYDYWPCGQAFVVEQDSYVFSALDL 516
N +D+ PCG AF VE +Y F + DL
Sbjct: 45770 NHSAVHDFNPCGYAFFVENGAYTFESTDL 45684
Score = 34.8 bits (70), Expect(5) = 1e-018
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1 / -3
Query: 202 TVFTFSDTRNKFTALGCNVVAML 270
T F S TRNKF A+GC+ +A+L
Sbjct: 46013 THFPVSSTRNKFVAVGCDTIAIL 45945
Score = 31.2 bits (62), Expect(5) = 1e-018
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1 / -3
Query: 331 IIDGSCSGVACCQAPVPKG 387
+ + SCSG CCQ +P+G
Sbjct: 45872 VANESCSGTGCCQISIPQG 45816
Score = 24.8 bits (48), Expect(2) = 0.002
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -3
Query: 718 NGCTDINECITRNPCTN 768
N C + N+C+ CTN
Sbjct: 44900 NECMESNDCVEEATCTN 44850
Score = 23.9 bits (46), Expect(5) = 1e-018
Identities = 6/16 (37%), Positives = 13/16 (81%)
Frame = +1 / -3
Query: 553 VVLEWSVNGSSCEEAK 600
V+L+W+V +C++A+
Sbjct: 45656 VLLDWAVGNQTCQQAQ 45609
>gb|CG959445.1|CG959445 MBEHC09TFB mth2 Medicago truncatula genomic clone 54B17, DNA
sequence
Length = 854
Score = 70.4 bits (148), Expect = 4e-011
Identities = 23/51 (45%), Positives = 30/51 (58%)
Frame = +1 / +2
Query: 553 VVLEWSVNGSSCEEAKLSGSYACAENAYCYNSSNGIGYRCNCSSGFEGNPY 705
++L+WSV C +K YAC N+ CY+ GYRC C G+EGNPY
Sbjct: 122 MILDWSVGSKYCNASKNEDDYACRNNSDCYDKDIDFGYRCKCKHGYEGNPY 274
>gb|CG955056.1|CG955056 MBEFQ86TR mth2 Medicago truncatula genomic clone 46O3, DNA sequence
Length = 942
Score = 55.8 bits (116), Expect(2) = 1e-008
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1 / +3
Query: 574 NGSSCEEAKLSGSYACAENAYCYNSSNGIGYRCNCSSGFEGNPY 705
N S+ K +Y C N++C + GYRC+C+ GFEGNPY
Sbjct: 150 NCSTASSKKNGVNYGCKNNSHCDDKDTYFGYRCHCNQGFEGNPY 281
Score = 24.8 bits (48), Expect(2) = 1e-008
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1 / +3
Query: 460 CGQAFVVEQDSYVFSALDLN 519
C AFVV+ SY FS L+
Sbjct: 30 CSYAFVVKNGSYTFSTNHLS 89
>gb|CG930107.1|CG930107 MBEEM31TFB mth2 Medicago truncatula genomic clone 39E13, DNA
sequence
Length = 866
Score = 55.8 bits (116), Expect(2) = 1e-008
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +1 / +2
Query: 574 NGSSCEEAKLSGSYACAENAYCYNSSNGIGYRCNCSSGFEGNPY 705
N S+ K +Y C N++C + GYRC+C+ GFEGNPY
Sbjct: 155 NCSTASSKKNGVNYGCKNNSHCDDKDTYFGYRCHCNQGFEGNPY 286
Score = 24.8 bits (48), Expect(2) = 1e-008
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1 / +2
Query: 460 CGQAFVVEQDSYVFSALDLN 519
C AFVV+ SY FS L+
Sbjct: 35 CSYAFVVKNGSYTFSTNHLS 94
>gb|AC147501.9| Medicago truncatula clone mth2-12n2, complete sequence
Length = 140523
Score = 36.7 bits (74), Expect(3) = 2e-005
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1 / -2
Query: 184 SVNLEGTVFTFSDTRNKFTALGCNVVAMLLNGSTGYSG 297
++NL + F +S + NKF A+GCN +A L + T G
Sbjct: 13172 TINLGVSPFMYSQSYNKFLAVGCNNLAFLQSNGTTVGG 13059
Score = 36.2 bits (73), Expect = 0.87
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1 / -2
Query: 619 CAENAYCYNSSNGIGYRCNCSSGFEGNPYLQG 714
C ++ ++ G +C CSSG+ GNPY+ G
Sbjct: 12746 CYDSKVTSLNNRTTGRKCQCSSGYTGNPYIVG 12651
Score = 34.4 bits (69), Expect(2) = 0.031
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1 / -1
Query: 187 VNLEGTVFTFSDTRNKFTALGCNVVAMLLNGSTGYSG 297
+NL G F +S NKF A+GCN +A + + G
Sbjct: 8487 INLGGGPFIYSQDYNKFLAVGCNNLAFIQSSGNMVGG 8377
Score = 33.5 bits (67), Expect = 5.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1 / -1
Query: 619 CAENAYCYNSSNGIGYRCNCSSGFEGNPYLQG 714
C ++ ++ G +C C SG+ GNPY+ G
Sbjct: 8022 CYDSQVTSINNRNTGRQCQCFSGYFGNPYIAG 7927
Score = 24.8 bits (48), Expect(3) = 2e-005
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +1 / -2
Query: 328 NIIDGSCSGVACCQAPVPKGLKKLDLEFSNIN 423
N + C+G CC+ +P L + + F ++
Sbjct: 13016 NSSNDRCNGRYCCETSLPTHLSEYNATFQGLS 12921
Score = 23.9 bits (46), Expect(2) = 0.031
Identities = 8/35 (22%), Positives = 15/35 (42%)
Frame = +1 / -1
Query: 328 NIIDGSCSGVACCQAPVPKGLKKLDLEFSNINITN 432
N+ C+G CC+ +P L + + + N
Sbjct: 8331 NLSSDGCNGRYCCETSLPMHLSEYNATLQGLRGPN 8227
Score = 23.9 bits (46), Expect(3) = 2e-005
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1 / -2
Query: 295 GGCASFCSSGN 327
GGC S C GN
Sbjct: 13064 GGCVSICDDGN 13032
>gb|BM780255.1|BM780255 EST590831 KV2 Medicago truncatula cDNA clone pKV2-54O24, mRNA
sequence
Length = 813
Score = 42.1 bits (86), Expect(2) = 4e-005
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1 / +1
Query: 283 TGYSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLEFSN 417
T Y+G + N I +G+CSG+ CCQ +P ++ + ++ SN
Sbjct: 460 TFYTGCLTICDGTRNRIENGACSGIGCCQVDIPPMMRNITIQSSN 594
Score = 26.6 bits (52), Expect(2) = 4e-005
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +1
Query: 208 FTFSDTRNKFTALGCNVVAML 270
F+ S NKF +GCN + L
Sbjct: 376 FSLSTRENKFLTVGCNSIGFL 438
>gb|BF644766.1|BF644766 NF022E05EC1F1038 Elicited cell culture Medicago truncatula cDNA
clone NF022E05EC 5', mRNA sequence
Length = 656
Score = 42.1 bits (86), Expect(2) = 4e-005
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1 / +1
Query: 283 TGYSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLEFSN 417
T Y+G + N I +G+CSG+ CCQ +P ++ + ++ SN
Sbjct: 487 TFYTGCLTICDGTRNRIENGACSGIGCCQVDIPPMMRNITIQSSN 621
Score = 26.6 bits (52), Expect(2) = 4e-005
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +1
Query: 208 FTFSDTRNKFTALGCNVVAML 270
F+ S NKF +GCN + L
Sbjct: 403 FSLSTRENKFLTVGCNSIGFL 465
>gb|BE941874.1|BE941874 EST421453 MGHG Medicago truncatula cDNA clone pMGHG-6D22, mRNA
sequence
Length = 523
Score = 42.1 bits (86), Expect(2) = 4e-005
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1 / +2
Query: 283 TGYSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLEFSN 417
T Y+G + N I +G+CSG+ CCQ +P ++ + ++ SN
Sbjct: 341 TFYTGCLTICDGTRNRIENGACSGIGCCQVDIPPMMRNITIQSSN 475
Score = 26.6 bits (52), Expect(2) = 4e-005
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1 / +2
Query: 208 FTFSDTRNKFTALGCNVVAML 270
F+ S NKF +GCN + L
Sbjct: 257 FSLSTRENKFLTVGCNSIGFL 319
>gb|BF520302.1|BF520302 EST457772 DSIL Medicago truncatula cDNA clone pDSIL-23A12, mRNA
sequence
Length = 718
Score = 41.2 bits (84), Expect(2) = 6e-004
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1 / +1
Query: 289 YSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLEFSN 417
Y+G + N I +G+CSG+ CCQ +P ++ + ++ SN
Sbjct: 466 YTGCLTICNGTRNRIENGACSGIGCCQVDIPPMMRNITIQASN 594
Score = 23.4 bits (45), Expect(2) = 6e-004
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1 / +1
Query: 211 TFSDTRNKFTALGCNVVAML 270
+ S NKF +GCN + +L
Sbjct: 379 SISPRENKFLTVGCNSLGVL 438
>gb|CG922766.1|CG922766 MBEIC52TF mth2 Medicago truncatula genomic clone 60J7, DNA sequence
Length = 921
Score = 33.9 bits (68), Expect(2) = 0.001
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 667 RCNCSSGFEGNPY 705
RC+C+ GFEGNPY
Sbjct: 243 RCHCNQGFEGNPY 281
Score = 29.8 bits (59), Expect(2) = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1 / +1
Query: 574 NGSSCEEAKLSGSYACAENAYCYNSSNGIGYR 669
N S+ K +Y C +N+YC + GYR
Sbjct: 148 NCSTASSKKNGVNYGCKKNSYCDDKDTYFGYR 243
>gb|CG961657.1|CG961657 MBENP51TF mth2 Medicago truncatula genomic clone 9J6, DNA sequence
Length = 902
Score = 33.9 bits (68), Expect(2) = 0.001
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 667 RCNCSSGFEGNPY 705
RC+C+ GFEGNPY
Sbjct: 243 RCHCNQGFEGNPY 281
Score = 29.8 bits (59), Expect(2) = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1 / +1
Query: 574 NGSSCEEAKLSGSYACAENAYCYNSSNGIGYR 669
N S+ K +Y C +N+YC + GYR
Sbjct: 148 NCSTASSKKNGVNYGCKKNSYCDDKDTYFGYR 243
>gb|CG938692.1|CG938692 MBEDM19TRC mth2 Medicago truncatula genomic clone 33C13, DNA
sequence
Length = 894
Score = 33.9 bits (68), Expect(2) = 0.001
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1 / +1
Query: 667 RCNCSSGFEGNPY 705
RC+C+ GFEGNPY
Sbjct: 238 RCHCNQGFEGNPY 276
Score = 29.8 bits (59), Expect(2) = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1 / +2
Query: 574 NGSSCEEAKLSGSYACAENAYCYNSSNGIGYR 669
N S+ K +Y C +N+YC + GYR
Sbjct: 143 NCSTASSKKNGVNYGCKKNSYCDDKDTYFGYR 238
>gb|CG941190.1|CG941190 MBEJV36TF mth2 Medicago truncatula genomic clone 71E24, DNA
sequence
Length = 833
Score = 37.6 bits (76), Expect(2) = 0.003
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / -3
Query: 772 CSNTIGGFQCTCPAGMSGDGLKEGSGCN 855
C+N G +QC CPA G+G G+ C+
Sbjct: 465 CTNLHGSYQCLCPAEYEGNGKMNGTKCS 382
Score = 24.8 bits (48), Expect(2) = 0.003
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1 / -3
Query: 718 NGCTDINECITRNPCTN 768
N C + N+C+ CTN
Sbjct: 507 NECMESNDCVEEATCTN 457
>emb|CR484202.1| mth2-151P17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 596
Score = 37.6 bits (76), Expect(2) = 0.007
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1 / -3
Query: 289 YSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLE 408
Y+G + N I +G+CSG+ CCQ +P ++ + ++
Sbjct: 123 YTGCLTICNGTRNRIENGACSGIGCCQVDIPPMMRNITIQ 4
Score = 23.4 bits (45), Expect(2) = 0.007
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1 / -3
Query: 211 TFSDTRNKFTALGCNVVAML 270
+ S NKF +GCN + +L
Sbjct: 210 SISPRENKFLTVGCNSLGVL 151
>emb|CR512310.1| mth4-28J14RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 424
Score = 36.7 bits (74), Expect(2) = 0.013
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1 / -2
Query: 289 YSGGCASFCSSGNNIIDGSCSGVACCQAPVPKGLKKLDLE 408
Y+G + N I +G+CSG+ CCQ +P ++ + ++
Sbjct: 123 YTGCLTICNGTRNRIENGACSGIGCCQIGIPPMMRNITIQ 4
Score = 23.4 bits (45), Expect(2) = 0.013
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1 / -2
Query: 211 TFSDTRNKFTALGCNVVAML 270
+ S NKF +GCN + +L
Sbjct: 210 SISPRENKFLTVGCNSLGVL 151
>gb|BF650159.1|BF650159 NF088H02EC1F1026 Elicited cell culture Medicago truncatula cDNA
clone NF088H02EC 5', mRNA sequence
Length = 520
Score = 34.8 bits (70), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 790 GFQCTCPAGMSGDGLKEGSGC 852
GF+C C G GDG G+GC
Sbjct: 239 GFRCQCVDGFRGDGFASGTGC 301
Score = 33.0 bits (66), Expect(2) = 0.023
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 652 NGIGYRCNCSSGFEGNPYLQG 714
NG G+RC C GF G+ + G
Sbjct: 230 NGTGFRCQCVDGFRGDGFASG 292
Score = 26.2 bits (51), Expect(2) = 0.023
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1 / +2
Query: 490 SYVFSALDLNNTNDTKPQYRHVVLEWSVNGS 582
+Y+FSA+ + + Q++ + L W + GS
Sbjct: 89 NYLFSAIAVEQNKEISLQFQAIELGWWLQGS 181
>gb|BE203160.1|BE203160 EST403182 KV1 Medicago truncatula cDNA clone pKV1-4L3, mRNA
sequence
Length = 147
Score = 40.3 bits (82), Expect = 0.050
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1 / -3
Query: 322 GNNIIDGSCSGVACCQAPVPKGLKKLDLEFSNINITN 432
G+ I DG CSGV CCQ + ++ + ++ SN N ++
Sbjct: 130 GDQINDG*CSGVGCCQIDIHHKMRNVSIQASNFNTSS 20
>gb|BH001411.1|BH001411 T122553b Medicago truncatula MT-H2 BAC library Medicago truncatula
genomic clone 034A01, DNA sequence
Length = 598
Score = 32.1 bits (64), Expect(2) = 0.076
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1 / -1
Query: 787 GGFQCTCPAGMSGDGLKEGSGCN 855
G +QC CPA G+G G+ C+
Sbjct: 451 GSYQCLCPAEYEGNGKMNGTKCS 383
Score = 25.3 bits (49), Expect(2) = 0.076
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1 / -2
Query: 715 PNGCTDINECITRNPCTNRCSNTI 786
PN DINEC++ C + TI
Sbjct: 528 PNYPLDINECMSPMTCVEEATCTI 457
>emb|CR488576.1| mth2-157F22FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 612
Score = 38.5 bits (78), Expect = 0.18
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1 / -2
Query: 766 NRCSNTIGGFQCTCPAGMSGDGLKEG 843
+ C N G ++C CP G SG+G KEG
Sbjct: 515 DHCRNKDGFYECFCPDGQSGNGTKEG 438
>emb|CR297361.1| mte1-14K8FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 805
Score = 36.7 bits (74), Expect = 0.63
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1 / -1
Query: 772 CSNTIGGFQCTCPAGMSGDGLKEGSG 849
C GG +C CP G GDG+K G
Sbjct: 649 CKQDDGGVKCQCPTGFKGDGVKNCEG 572
>emb|CR931730.1| Medicago truncatula chromosome 5 clone mth2-17o15, COMPLETE SEQUENCE
Length = 89342
Score = 36.7 bits (74), Expect = 0.63
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1 / -1
Query: 772 CSNTIGGFQCTCPAGMSGDGLKEGSG 849
C GG +C CP G GDG+K G
Sbjct: 14975 CKQDDGGVKCQCPTGFKGDGVKNCEG 14898
>gb|AL378333.1|AL378333 MtBB37E07F1 MtBB Medicago truncatula cDNA clone MtBB37E07 T3, mRNA
sequence
Length = 477
Score = 33.0 bits (66), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1 / +2
Query: 787 GGFQCTCPAGMSGDGLK 837
GG +C CP G GDG+K
Sbjct: 125 GGVKCQCPTGFKGDGVK 175
Score = 23.4 bits (45), Expect(3) = 0.89
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTC 807
C NT G + C+C
Sbjct: 236 CKNTWGSYDCSC 271
Score = 23.4 bits (45), Expect(3) = 0.89
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1 / +2
Query: 661 GYRCNCSSGFEGN 699
G +C C +GF+G+
Sbjct: 128 GVKCQCPTGFKGD 166
Score = 22.5 bits (43), Expect(3) = 0.89
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / +2
Query: 712 GPNGCTDINECITRNPC 762
G C DI+EC + C
Sbjct: 167 GVKNCEDIDECKEKKAC 217
>gb|AL385929.1|AL385929 MtBC31E11F1 MtBC Medicago truncatula cDNA clone MtBC31E11 T3, mRNA
sequence
Length = 463
Score = 33.0 bits (66), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1 / +2
Query: 787 GGFQCTCPAGMSGDGLK 837
GG +C CP G GDG+K
Sbjct: 311 GGVKCQCPTGFKGDGVK 361
Score = 23.4 bits (45), Expect(3) = 0.89
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTC 807
C NT G + C+C
Sbjct: 422 CKNTWGSYDCSC 457
Score = 23.4 bits (45), Expect(3) = 0.89
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1 / +2
Query: 661 GYRCNCSSGFEGN 699
G +C C +GF+G+
Sbjct: 314 GVKCQCPTGFKGD 352
Score = 22.5 bits (43), Expect(3) = 0.89
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / +2
Query: 712 GPNGCTDINECITRNPC 762
G C DI+EC + C
Sbjct: 353 GVKNCEDIDECKEKKAC 403
>gb|CA991420.1|CA991420 EST644928 GESD Medicago truncatula cDNA clone GESD-32N20, mRNA
sequence
Length = 460
Score = 33.0 bits (66), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1 / +1
Query: 787 GGFQCTCPAGMSGDGLK 837
GG +C CP G GDG+K
Sbjct: 25 GGVKCQCPTGFKGDGVK 75
Score = 23.4 bits (45), Expect(3) = 0.89
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 772 CSNTIGGFQCTC 807
C NT G + C+C
Sbjct: 136 CKNTWGSYDCSC 171
Score = 23.4 bits (45), Expect(3) = 0.89
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1 / +1
Query: 661 GYRCNCSSGFEGN 699
G +C C +GF+G+
Sbjct: 28 GVKCQCPTGFKGD 66
Score = 22.5 bits (43), Expect(3) = 0.89
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1 / +1
Query: 712 GPNGCTDINECITRNPC 762
G C DI+EC + C
Sbjct: 67 GVKNCEDIDECKEKKAC 117
>gb|AC175028.4| Medicago truncatula clone mth2-7e22, WORKING DRAFT SEQUENCE, 37
unordered pieces
Length = 208388
Score = 28.5 bits (56), Expect(2) = 1.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1 / -1
Query: 586 CEEAKLSGSYACAENAYCYNSSNGIGYRCNCSS 684
C ++ +AYC SSNG C CSS
Sbjct: 36911 CNQSSFCSPLNSNSSAYCC*SSNGSEISCFCSS 36813
Score = 23.9 bits (46), Expect(2) = 1.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1 / -1
Query: 769 RCSNTIGGFQCTCPAG 816
RCS++ G + +CP G
Sbjct: 36791 RCSSSSNGSEISCPGG 36744
>gb|CB893607.1|CB893607 EST646399 HOGA Medicago truncatula cDNA clone HOGA-28O8, mRNA
sequence
Length = 943
Score = 34.8 bits (70), Expect = 2.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1 / -2
Query: 334 IDGSCSGVACCQAPVPKGLKK 396
ID SC+ V CC A VP GL+K
Sbjct: 921 IDRSCNNVDCCSAGVPHGLEK 859
>emb|CR967879.1| mth4-35H12FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 619
Score = 34.4 bits (69), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1 / -2
Query: 322 GNNIIDGSCSGVACCQAPVPKGLKKLDL 405
G+ I DG CSGV CCQ + ++ + +
Sbjct: 90 GDQINDGKCSGVGCCQIDIHPKMRNVSI 7
>gb|AW687022.1|AW687022 NF005B03RT1F1027 Developing root Medicago truncatula cDNA clone
NF005B03RT 5', mRNA sequence
Length = 667
Score = 34.4 bits (69), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTCPAGMSGDGLKEG 843
C NT G +C CP G SG+G G
Sbjct: 56 CRNTDGSHECFCPDGQSGNGTLAG 127
>gb|AW686917.2|AW686917 NF004A04RT1F1024 Developing root Medicago truncatula cDNA clone
NF004A04RT 5', mRNA sequence
Length = 546
Score = 34.4 bits (69), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTCPAGMSGDGLKEG 843
C NT G +C CP G SG+G G
Sbjct: 56 CRNTDGSHECFCPDGQSGNGTLAG 127
>gb|AJ497449.1|AJ497449 AJ497449 MTFLOW Medicago truncatula cDNA clone mt--abc955109d09,
mRNA sequence
Length = 688
Score = 33.9 bits (68), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTCPAGMSGDGLK 837
C + G +C CPAG GDG+K
Sbjct: 29 CLSDNGAVKCECPAGFKGDGVK 94
>gb|BH001420.1|BH001420 T122562b Medicago truncatula MT-H2 BAC library Medicago truncatula
genomic clone 071E24, DNA sequence
Length = 569
Score = 26.6 bits (52), Expect(2) = 6.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1 / -1
Query: 718 NGCTDINECITRNPCT 765
N C + N+C+ + PCT
Sbjct: 506 NECMESNDCVEKAPCT 459
Score = 23.9 bits (46), Expect(2) = 6.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1 / -3
Query: 793 FQCTCPAGMSGDG 831
+QC CPA G+G
Sbjct: 444 YQCLCPAEYEGNG 406
>emb|CR315099.1| mte1-39M11RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 692
Score = 33.0 bits (66), Expect = 7.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3 / +2
Query: 438 HRLRLLAMWSGLRRGAGFICVF 503
H L+ + WSGL+R G +CVF
Sbjct: 608 HDLKKIFWWSGLKRDCGTVCVF 673
>gb|BQ137863.1|BQ137863 NF033G07RT1F1052 Developing root Medicago truncatula cDNA clone
NF033G07RT 5', mRNA sequence
Length = 981
Score = 33.0 bits (66), Expect = 7.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2 / +1
Query: 574 SQTTRAQHVGIEVLCRLCCSDQELKTHMNPAPRRRPDHMASNRNR 440
S T + VGI V CR+ S +L T P R P H +N R
Sbjct: 223 SGTVYSDPVGIFVFCRVSFSFSDLHTASPPPVRPAPSHTRTNPKR 357
>gb|AC140774.7| Medicago truncatula clone mth2-5e11, complete sequence
Length = 116998
Score = 33.0 bits (66), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2 / -1
Query: 133 CSQDHQATRCQESQACCFRWTA 68
C H+ RC+ Q+ CFRW++
Sbjct: 21670 CESHHRRRRCKHIQSLCFRWSS 21605
>gb|AW684571.1|AW684571 NF018D11NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF018D11NR 5', mRNA sequence
Length = 617
Score = 33.0 bits (66), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1 / -3
Query: 334 IDGSCSGVACCQAPVPKGLKK 396
ID SC+ V CC VP GL+K
Sbjct: 471 IDRSCNNVDCCSCRVPHGLEK 409
>gb|BG647271.1|BG647271 EST508890 HOGA Medicago truncatula cDNA clone pHOGA-16M7 5' end,
mRNA sequence
Length = 750
Score = 33.0 bits (66), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1 / -3
Query: 334 IDGSCSGVACCQAPVPKGLKK 396
ID SC+ V CC VP GL+K
Sbjct: 178 IDRSCNNVDCCSCRVPHGLEK 116
>gb|CB894639.1|CB894639 EST647431 HOGA Medicago truncatula cDNA clone HOGA-31J18, mRNA
sequence
Length = 791
Score = 33.0 bits (66), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1 / -2
Query: 334 IDGSCSGVACCQAPVPKGLKK 396
ID SC+ V CC VP GL+K
Sbjct: 745 IDRSCNNVDCCSCRVPHGLEK 683
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
Length = 105218
Score = 30.7 bits (61), Expect(2) = 8.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1 / -3
Query: 128 TRPSSNEMSRIPSMLFPMDSNGPLCP 51
T PS SR P ++ SNGP CP
Sbjct: 60243 TFPSHRRRSRCPFRVYSPHSNGPCCP 60166
Score = 28.5 bits (56), Expect(2) = 8.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1 / -2
Query: 194 RLTLEFAVPPMHC*ELALANMLTRPS 117
RL F +PP HC EL ++ T PS
Sbjct: 92215 RLPSSFNLPPPHCNELLKLDITTPPS 92138
>gb|CA922654.1|CA922654 EST640372 MTUS Medicago truncatula cDNA clone MTUS-56E7, mRNA
sequence
Length = 684
Score = 25.7 bits (50), Expect(2) = 8.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1 / -3
Query: 772 CSNTIGGFQCTCPAGM 819
C NT G + C C G+
Sbjct: 499 CKNTWGSYDCKCKGGL 452
Score = 24.4 bits (47), Expect(2) = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -3
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC ++ C
Sbjct: 568 GNNKCEDVDECKEKSAC 518
>gb|BG645881.1|BG645881 EST507500 KV3 Medicago truncatula cDNA clone pKV3-47H24 5' end,
mRNA sequence
Length = 677
Score = 25.7 bits (50), Expect(2) = 8.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1 / -2
Query: 772 CSNTIGGFQCTCPAGM 819
C NT G + C C G+
Sbjct: 589 CKNTWGSYDCKCKGGL 542
Score = 24.4 bits (47), Expect(2) = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -2
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC ++ C
Sbjct: 658 GNNKCEDVDECKEKSAC 608
>gb|CX530226.1|CX530226 s13dNF53H11MJ093_246487 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 619
Score = 25.7 bits (50), Expect(2) = 8.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1 / +3
Query: 772 CSNTIGGFQCTCPAGM 819
C NT G + C C G+
Sbjct: 528 CKNTWGSYDCKCKGGL 575
Score = 24.4 bits (47), Expect(2) = 8.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / +3
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC ++ C
Sbjct: 459 GNNKCEDVDECKEKSAC 509
>gb|CX518171.1|CX518171 s13dNF27H06VI048_422055 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 607
Score = 25.7 bits (50), Expect(2) = 9.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTCPAGM 819
C NT G + C C G+
Sbjct: 125 CKNTWGSYDCKCKGGL 172
Score = 24.4 bits (47), Expect(2) = 9.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC ++ C
Sbjct: 56 GNNKCEDVDECKEKSAC 106
>gb|BE319798.2|BE319798 NF021G12RT1F1088 Developing root Medicago truncatula cDNA clone
NF021G12RT 5', mRNA sequence
Length = 459
Score = 25.7 bits (50), Expect(2) = 9.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTCPAGM 819
C NT G + C C G+
Sbjct: 341 CKNTWGSYDCKCKGGL 388
Score = 24.4 bits (47), Expect(2) = 9.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC ++ C
Sbjct: 272 GNNKCEDVDECKEKSAC 322
>gb|BE319686.2|BE319686 NF017G04RT1F1024 Developing root Medicago truncatula cDNA clone
NF017G04RT 5', mRNA sequence
Length = 312
Score = 25.7 bits (50), Expect(2) = 9.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1 / +2
Query: 772 CSNTIGGFQCTCPAGM 819
C NT G + C C G+
Sbjct: 221 CKNTWGSYDCKCKGGL 268
Score = 24.4 bits (47), Expect(2) = 9.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / +2
Query: 712 GPNGCTDINECITRNPC 762
G N C D++EC ++ C
Sbjct: 152 GNNKCEDVDECKEKSAC 202
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.316 0.133 0.426
Matrix: BLOSUM62
Number of Hits to DB: 1,024,405,850
Number of Sequences: 392609
Number of extensions: 15280523
Number of successful extensions: 60805
Number of sequences better than 10.0: 49
length of database: 147,244,331
effective HSP length: 52
effective length of database: 126,828,663
effective search space used: 34751053662
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)