TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE942668.1|BE942668 EST422247 MGHG Medicago truncatula c... 155 7e-037
gb|BE942669.1|BE942669 EST422248 MGHG Medicago truncatula c... 155 7e-037
gb|CA990695.1|CA990695 EST644203 GESD Medicago truncatula c... 155 7e-037
gb|CB894215.1|CB894215 EST647007 HOGA Medicago truncatula c... 155 7e-037
gb|BG451975.1|BG451975 NF043G10DT1F1081 Drought Medicago tr... 153 2e-036
gb|CA923066.1|CA923066 EST640784 MTUS Medicago truncatula c... 148 1e-034
gb|CX532406.1|CX532406 s13dNF61D07MJ058_271105 Methyl Jasmo... 148 1e-034
gb|BE942663.1|BE942663 EST422242 MGHG Medicago truncatula c... 138 1e-031
gb|AW695008.2|AW695008 NF082D09ST1F1077 Developing stem Med... 138 1e-031
gb|BG588912.1|BG588912 EST490721 MHRP- Medicago truncatula ... 138 1e-031
gb|BQ147412.1|BQ147412 NF040C12FL1F1097 Developing flower M... 138 1e-031
gb|BG644551.1|BG644551 EST506170 KV3 Medicago truncatula cD... 136 3e-031
gb|BQ148664.1|BQ148664 NF080C11FL1F1086 Developing flower M... 132 7e-030
gb|BQ147135.1|BQ147135 NF034A07FL1F1052 Developing flower M... 128 9e-029
gb|AC142526.5| Medicago truncatula clone mth2-34h20, comple... 67 5e-024
>gb|BE942668.1|BE942668 EST422247 MGHG Medicago truncatula cDNA clone pMGHG-9G23, mRNA
sequence
Length = 630
Score = 155 bits (333), Expect = 7e-037
Identities = 63/83 (75%), Positives = 65/83 (78%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVY
Sbjct: 324 IGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKKAERELKWK 503
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI+EMCRD WNWASKNPYGY
Sbjct: 504 AKYGIDEMCRDQWNWASKNPYGY 572
Score = 124 bits (265), Expect = 2e-027
Identities = 58/87 (66%), Positives = 61/87 (70%)
Frame = -3 / -3
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFLLAQFH S HISSIPY *TISASPGLRPA T GIFFP+AFS
Sbjct: 568 P*GFLLAQFH*SRHISSIPYFAFHLSSLSAFFVDA*TISASPGLRPAFTSGIFFPDAFSK 389
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQP+ + SS
Sbjct: 388 ALTISKTDVPFPVPKL*TSQPMSASSS 308
>gb|BE942669.1|BE942669 EST422248 MGHG Medicago truncatula cDNA clone pMGHG-9I1, mRNA
sequence
Length = 614
Score = 155 bits (333), Expect = 7e-037
Identities = 63/83 (75%), Positives = 65/83 (78%)
Frame = +1 / +2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVY
Sbjct: 308 IGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKKAERELKWK 487
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI+EMCRD WNWASKNPYGY
Sbjct: 488 AKYGIDEMCRDQWNWASKNPYGY 556
Score = 124 bits (265), Expect = 2e-027
Identities = 58/87 (66%), Positives = 61/87 (70%)
Frame = -3 / -3
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFLLAQFH S HISSIPY *TISASPGLRPA T GIFFP+AFS
Sbjct: 552 P*GFLLAQFH*SRHISSIPYFAFHLSSLSAFFVDA*TISASPGLRPAFTSGIFFPDAFSK 373
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQP+ + SS
Sbjct: 372 ALTISKTDVPFPVPKL*TSQPMSASSS 292
>gb|CA990695.1|CA990695 EST644203 GESD Medicago truncatula cDNA clone GESD-29H3, mRNA
sequence
Length = 697
Score = 155 bits (333), Expect = 7e-037
Identities = 63/83 (75%), Positives = 65/83 (78%)
Frame = +1 / -3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVY
Sbjct: 602 IGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKKAERELKWK 423
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI+EMCRD WNWASKNPYGY
Sbjct: 422 AKYGIDEMCRDQWNWASKNPYGY 354
Score = 124 bits (265), Expect = 2e-027
Identities = 58/87 (66%), Positives = 61/87 (70%)
Frame = -3 / +1
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFLLAQFH S HISSIPY *TISASPGLRPA T GIFFP+AFS
Sbjct: 358 P*GFLLAQFH*SRHISSIPYFAFHLSSLSAFFVDA*TISASPGLRPAFTSGIFFPDAFSK 537
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQP+ + SS
Sbjct: 538 ALTISKTDVPFPVPKL*TSQPMSASSS 618
>gb|CB894215.1|CB894215 EST647007 HOGA Medicago truncatula cDNA clone HOGA-30O14, mRNA
sequence
Length = 788
Score = 155 bits (333), Expect = 7e-037
Identities = 63/83 (75%), Positives = 65/83 (78%)
Frame = +1 / +2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVY
Sbjct: 389 IGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKKAERELKWK 568
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI+EMCRD WNWASKNPYGY
Sbjct: 569 AKYGIDEMCRDQWNWASKNPYGY 637
Score = 124 bits (265), Expect = 2e-027
Identities = 58/87 (66%), Positives = 61/87 (70%)
Frame = -3 / -3
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFLLAQFH S HISSIPY *TISASPGLRPA T GIFFP+AFS
Sbjct: 633 P*GFLLAQFH*SRHISSIPYFAFHLSSLSAFFVDA*TISASPGLRPAFTSGIFFPDAFSK 454
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQP+ + SS
Sbjct: 453 ALTISKTDVPFPVPKL*TSQPMSASSS 373
>gb|BG451975.1|BG451975 NF043G10DT1F1081 Drought Medicago truncatula cDNA clone NF043G10DT
5', mRNA sequence
Length = 635
Score = 153 bits (329), Expect = 2e-036
Identities = 62/83 (74%), Positives = 64/83 (77%)
Frame = +1 / +1
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVY
Sbjct: 349 IGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKKAERELKWK 528
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI+EMCRD WNWA KNPYGY
Sbjct: 529 AKYGIDEMCRDQWNWAXKNPYGY 597
Score = 122 bits (260), Expect = 8e-027
Identities = 57/87 (65%), Positives = 60/87 (68%)
Frame = -3 / -1
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFL AQFH S HISSIPY *TISASPGLRPA T GIFFP+AFS
Sbjct: 593 P*GFLXAQFH*SRHISSIPYFAFHLSSLSAFFVDA*TISASPGLRPAFTSGIFFPDAFSK 414
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQP+ + SS
Sbjct: 413 ALTISKTDVPFPVPKL*TSQPMSASSS 333
>gb|CA923066.1|CA923066 EST640784 MTUS Medicago truncatula cDNA clone MTUS-62D8, mRNA
sequence
Length = 819
Score = 148 bits (317), Expect = 1e-034
Identities = 60/83 (72%), Positives = 63/83 (75%)
Frame = +1 / -2
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGCEVYNLGTGKGTSV E+V AFE ASGKKIPLV AGRRPGDAEIVY
Sbjct: 647 IGCEVYNLGTGKGTSVSEIVRAFEHASGKKIPLVKAGRRPGDAEIVYASTEKAERELKWK 468
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI++MCRD WNWASKNPYGY
Sbjct: 467 AKYGIDDMCRDQWNWASKNPYGY 399
Score = 121 bits (258), Expect = 2e-026
Identities = 57/87 (65%), Positives = 60/87 (68%)
Frame = -3 / +1
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFLLAQFH S H+SSIPY *TISASPGLRPA T GIFFP+A S
Sbjct: 403 P*GFLLAQFH*SRHMSSIPYFAFHLSSLSAFSVDA*TISASPGLRPAFTSGIFFPDACSK 582
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQPI + SS
Sbjct: 583 ALTISETDVPFPVPKL*TSQPISASSS 663
>gb|CX532406.1|CX532406 s13dNF61D07MJ058_271105 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 666
Score = 148 bits (317), Expect = 1e-034
Identities = 60/83 (72%), Positives = 63/83 (75%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGCEVYNLGTGKGTSV E+V AFE ASGKKIPLV AGRRPGDAEIVY
Sbjct: 333 IGCEVYNLGTGKGTSVSEIVRAFEHASGKKIPLVKAGRRPGDAEIVYASTEKAERELKWK 512
Query: 274 XXYGIEEMCRDLWNWASKNPYGY 342
YGI++MCRD WNWASKNPYGY
Sbjct: 513 AKYGIDDMCRDQWNWASKNPYGY 581
Score = 121 bits (258), Expect = 2e-026
Identities = 57/87 (65%), Positives = 60/87 (68%)
Frame = -3 / -3
Query: 338 PYGFLLAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSN 159
P GFLLAQFH S H+SSIPY *TISASPGLRPA T GIFFP+A S
Sbjct: 577 P*GFLLAQFH*SRHMSSIPYFAFHLSSLSAFSVDA*TISASPGLRPAFTSGIFFPDACSK 398
Query: 158 AATISNTDVPFPVPKLYTSQPILSESS 78
A TIS TDVPFPVPKL TSQPI + SS
Sbjct: 397 ALTISETDVPFPVPKL*TSQPISASSS 317
>gb|BE942663.1|BE942663 EST422242 MGHG Medicago truncatula cDNA clone pMGHG-9G13, mRNA
sequence
Length = 551
Score = 138 bits (295), Expect = 1e-031
Identities = 57/77 (74%), Positives = 59/77 (76%)
Frame = +1 / +3
Query: 94 IGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXX 273
IGC+VYNLGTGKGTSVLEMV AFEKASGKKIPLV AGRRPGDAEIVY
Sbjct: 321 IGCDVYNLGTGKGTSVLEMVRAFEKASGKKIPLVKAGRRPGDAEIVYASTKKAERELKWK 500
Query: 274 XXYGIEEMCRDLWNWAS 324
YGI+EMCRD WNWAS
Sbjct: 501 AKYGIDEMCRDQWNWAS 551
Score = 115 bits (246), Expect = 7e-025
Identities = 54/82 (65%), Positives = 57/82 (69%)
Frame = -3 / -2
Query: 323 LAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSNAATIS 144
LAQFH S HISSIPY *TISASPGLRPA T GIFFP+AFS A TIS
Sbjct: 550 LAQFH*SRHISSIPYFAFHLSSLSAFFVDA*TISASPGLRPAFTSGIFFPDAFSKALTIS 371
Query: 143 NTDVPFPVPKLYTSQPILSESS 78
TDVPFPVPKL TSQP+ + SS
Sbjct: 370 KTDVPFPVPKL*TSQPMSASSS 305
>gb|AW695008.2|AW695008 NF082D09ST1F1077 Developing stem Medicago truncatula cDNA clone
NF082D09ST 5', mRNA sequence
Length = 584
Score = 138 bits (295), Expect = 1e-031
Identities = 54/88 (61%), Positives = 61/88 (69%)
Frame = +1 / -3
Query: 85 SDKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXX 264
++ IGC YNLGTG+GTSVLEMV+AFEKASGKKIPL RRPGDA VY
Sbjct: 549 TENIGCTAYNLGTGRGTSVLEMVSAFEKASGKKIPLKLCPRRPGDATEVYASTDKAQKEL 370
Query: 265 XXXXXYGIEEMCRDLWNWASKNPYGYAG 348
YG+EEMCRD WNWA NP+GY+G
Sbjct: 369 GWKAKYGVEEMCRDQWNWAKNNPWGYSG 286
>gb|BG588912.1|BG588912 EST490721 MHRP- Medicago truncatula cDNA clone pMHRP-57N2, mRNA
sequence
Length = 679
Score = 138 bits (295), Expect = 1e-031
Identities = 54/88 (61%), Positives = 61/88 (69%)
Frame = +1 / +2
Query: 85 SDKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXX 264
++ IGC YNLGTG+GTSVLEMV+AFEKASGKKIPL RRPGDA VY
Sbjct: 119 TENIGCTAYNLGTGRGTSVLEMVSAFEKASGKKIPLKLCPRRPGDATEVYASTDKAQKEL 298
Query: 265 XXXXXYGIEEMCRDLWNWASKNPYGYAG 348
YG+EEMCRD WNWA NP+GY+G
Sbjct: 299 GWKAKYGVEEMCRDQWNWAKNNPWGYSG 382
>gb|BQ147412.1|BQ147412 NF040C12FL1F1097 Developing flower Medicago truncatula cDNA clone
NF040C12FL 5', mRNA sequence
Length = 586
Score = 138 bits (295), Expect = 1e-031
Identities = 54/88 (61%), Positives = 61/88 (69%)
Frame = +1 / +2
Query: 85 SDKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXX 264
++ IGC YNLGTG+GTSVLEMV+AFEKASGKKIPL RRPGDA VY
Sbjct: 23 TENIGCTAYNLGTGRGTSVLEMVSAFEKASGKKIPLKLCPRRPGDATEVYASTDKAQKEL 202
Query: 265 XXXXXYGIEEMCRDLWNWASKNPYGYAG 348
YG+EEMCRD WNWA NP+GY+G
Sbjct: 203 GWKAKYGVEEMCRDQWNWAKNNPWGYSG 286
>gb|BG644551.1|BG644551 EST506170 KV3 Medicago truncatula cDNA clone pKV3-37J19 5' end,
mRNA sequence
Length = 738
Score = 136 bits (292), Expect = 3e-031
Identities = 55/81 (67%), Positives = 60/81 (74%)
Frame = +1 / +1
Query: 82 DSDKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXX 261
D K GCEVYNLGTGKGTSVLEMVAAFE+ASGKKIP+V A RRPGDAE+VY
Sbjct: 496 DDPKTGCEVYNLGTGKGTSVLEMVAAFEQASGKKIPIVKADRRPGDAEVVYASTEKAAKE 675
Query: 262 XXXXXXYGIEEMCRDLWNWAS 324
YGI++MCRD WNWAS
Sbjct: 676 LNWKAKYGIDDMCRDQWNWAS 738
Score = 111 bits (236), Expect = 2e-023
Identities = 53/82 (64%), Positives = 55/82 (67%)
Frame = -3 / -2
Query: 323 LAQFHRSLHISSIPYXXXXXXXXXXXXXXX*TISASPGLRPANTRGIFFPEAFSNAATIS 144
LAQFH S HISS+PY *T SASPGLR A T GIFFPEA S AATIS
Sbjct: 737 LAQFH*SRHISSMPYLAFQLSSFAAFSVDA*TTSASPGLRSAFTIGIFFPEACSKAATIS 558
Query: 143 NTDVPFPVPKLYTSQPILSESS 78
TDVPFPVPKL TSQP+L SS
Sbjct: 557 KTDVPFPVPKL*TSQPVLGSSS 492
>gb|BQ148664.1|BQ148664 NF080C11FL1F1086 Developing flower Medicago truncatula cDNA clone
NF080C11FL 5', mRNA sequence
Length = 635
Score = 132 bits (282), Expect = 7e-030
Identities = 52/88 (59%), Positives = 59/88 (67%)
Frame = +1 / +2
Query: 85 SDKIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXX 264
++ I C YNLGTG+GTSVLEMV+AFEKASGKKIPL RPGDA VY
Sbjct: 146 TENIXCTAYNLGTGRGTSVLEMVSAFEKASGKKIPLKLCPXRPGDATEVYASTDKAQKEL 325
Query: 265 XXXXXYGIEEMCRDLWNWASKNPYGYAG 348
YG+EEMCRD WNWA NP+GY+G
Sbjct: 326 GWKAKYGVEEMCRDQWNWAXNNPWGYSG 409
>gb|BQ147135.1|BQ147135 NF034A07FL1F1052 Developing flower Medicago truncatula cDNA clone
NF034A07FL 5', mRNA sequence
Length = 567
Score = 128 bits (274), Expect = 9e-029
Identities = 51/80 (63%), Positives = 56/80 (70%)
Frame = +1 / +3
Query: 109 YNLGTGKGTSVLEMVAAFEKASGKKIPLVFAGRRPGDAEIVYXXXXXXXXXXXXXXXYGI 288
YNLGTG+GTSVLEMV+AFEKASGKKIPL RRPGDA VY YG+
Sbjct: 87 YNLGTGRGTSVLEMVSAFEKASGKKIPLKLCPRRPGDATEVYASTDKAQKELGWKAKYGV 266
Query: 289 EEMCRDLWNWASKNPYGYAG 348
EEMCRD WNWA NP+GY+G
Sbjct: 267 EEMCRDQWNWAKNNPWGYSG 326
>gb|AC142526.5| Medicago truncatula clone mth2-34h20, complete sequence
Length = 113622
Score = 67.0 bits (140), Expect(3) = 5e-024
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +1 / -3
Query: 97 GCEVYNLGTGKGTSVLEMVAAFEKASGKKIPL 192
GC+VYNLGTGKGTSVLEMV AFEKASGK I L
Sbjct: 39646 GCDVYNLGTGKGTSVLEMVRAFEKASGKVITL 39551
Score = 59.7 bits (124), Expect(3) = 2e-021
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1 / -2
Query: 97 GCEVYNLGTGKGTSVLEMVAAFEKASGKKI 186
GCEVYNLGTGKGTSV E+V AFE ASGK I
Sbjct: 35057 GCEVYNLGTGKGTSVSEIVRAFEHASGKVI 34968
Score = 58.3 bits (121), Expect(3) = 5e-024
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +1 / -1
Query: 280 YGIEEMCRDLWNWASKNPYGY 342
YGI+EMCRD WNWASKNPYGY
Sbjct: 38796 YGIDEMCRDQWNWASKNPYGY 38734
Score = 57.0 bits (118), Expect(3) = 2e-021
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1 / -2
Query: 280 YGIEEMCRDLWNWASKNPYGY 342
YGI++MCRD WNWASKNPYGY
Sbjct: 34148 YGIDDMCRDQWNWASKNPYGY 34086
Score = 41.8 bits (85), Expect(3) = 2e-021
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1 / -1
Query: 178 KKIPLVFAGRRPGDAEIVY 234
+KIPLV AGRRPGDAEIVY
Sbjct: 34479 QKIPLVKAGRRPGDAEIVY 34423
Score = 41.8 bits (85), Expect(3) = 5e-024
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1 / -3
Query: 178 KKIPLVFAGRRPGDAEIVY 234
+KIPLV AGRRPGDAEIVY
Sbjct: 39097 QKIPLVKAGRRPGDAEIVY 39041
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 600,185,467
Number of Sequences: 392609
Number of extensions: 8002626
Number of successful extensions: 50036
Number of sequences better than 1.0e-020: 17
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 22057602875
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)