TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3923331.2.1
         (496 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC175027.3|  Medicago truncatula clone mth2-102d9, WORKIN...   134   1e-030
gb|AY557602.1|  Medicago truncatula cultivar Jemalong core a...   131   2e-030

>gb|AC175027.3| Medicago truncatula clone mth2-102d9, WORKING DRAFT SEQUENCE, 16
             unordered pieces
          Length = 124356

 Score =  134 bits (287), Expect = 1e-030
 Identities = 53/86 (61%), Positives = 67/86 (77%)
 Frame = -3 / -2

                                                                         
Query: 452   RSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGF 273
             RS  LTL + ++AVL KF SLNHVPVWK ERP  ++GGD+LK+Y+IYP GLTQRQALY F
Sbjct: 92330 RSSNLTLESFKTAVLTKFTSLNHVPVWKPERPEILKGGDELKVYKIYPAGLTQRQALYTF 92151

                                       
Query: 272   RFRDDSELEQYIKDHPCAKLEVIFV* 195
             +F  D +   +++ +PCAK EVIFV*
Sbjct: 92150 KFNGDVDFRSHLESNPCAKFEVIFV* 92073



>gb|AY557602.1| Medicago truncatula cultivar Jemalong core alpha
            1,3-fucosyltransferase (FUT2) gene, complete cds
          Length = 3124

 Score =  131 bits (281), Expect(2) = 2e-030
 Identities = 51/85 (60%), Positives = 66/85 (77%)
 Frame = -3 / +2

                                                                        
Query: 449  SGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGFR 270
            S  LTL + ++AVL KF SLNHVPVWK ERP  ++GGD+LK+Y+IYP GLTQRQALY F+
Sbjct: 2870 SSNLTLESFKTAVLTKFTSLNHVPVWKPERPEILKGGDELKVYKIYPAGLTQRQALYTFK 3049

                                     
Query: 269  FRDDSELEQYIKDHPCAKLEVIFV* 195
            F  D +   +++ +PCAK EV+FV*
Sbjct: 3050 FNGDVDFRSHLESNPCAKFEVVFV* 3124




 Score = 24.9 bits (48), Expect(2) = 2e-030
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3 / +1

                         
Query: 491  RERGRFKSESIYM 453
            RERG F+ ESIY+
Sbjct: 2374 RERGTFEMESIYL 2412



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 501,006,059
Number of Sequences: 392609
Number of extensions: 6557448
Number of successful extensions: 46158
Number of sequences better than 1.0e-020: 3
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 14034401994
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)