TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC139842.16| Medicago truncatula clone mth2-6b10, WORKIN... 169 5e-041
gb|CG954988.1|CG954988 MBEMP69TR mth2 Medicago truncatula g... 154 1e-036
gb|CG961547.1|CG961547 MBEIS70TF mth2 Medicago truncatula g... 153 3e-036
gb|CG930935.1|CG930935 MBELI83TR mth2 Medicago truncatula g... 142 6e-033
gb|CG973927.1|CG973927 MBEMP53TF mth2 Medicago truncatula g... 142 6e-033
gb|AL389835.1|AL389835 MtBC57G04F1 MtBC Medicago truncatula... 131 1e-029
gb|CG966126.1|CG966126 MBEGT01TR mth2 Medicago truncatula g... 117 1e-025
gb|AC149269.11| Medicago truncatula clone mth2-102b19, comp... 100 2e-022
emb|CR505375.1| mth4-39I18FM1 BAC end, cultivar Jemalong A1... 95 6e-021
>gb|AC139842.16| Medicago truncatula clone mth2-6b10, WORKING DRAFT SEQUENCE, 4
unordered pieces
Length = 151398
Score = 169 bits (363), Expect = 5e-041
Identities = 64/118 (54%), Positives = 83/118 (70%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G +C+P E+G L L V D+SF G LP+ GN LE L+VAHN L+
Sbjct: 40628 LNEIIAMNNGFQACLPEEVGLLKNLTVFDVSFNKFLGPLPEKYGNAVGLEVLNVAHNYLS 40807
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISF 355
G+IP S+C LP+L NFTYSYNFF GEP +CL +P DDRQNC+ RP QRP + C +F
Sbjct: 40808 GQIPASICALPNLVNFTYSYNFFTGEPPQCLVLPAADDRQNCLPARPRQRPAKTCKAF 40981
>gb|CG954988.1|CG954988 MBEMP69TR mth2 Medicago truncatula genomic clone 3L18, DNA sequence
Length = 943
Score = 154 bits (331), Expect = 1e-036
Identities = 62/122 (50%), Positives = 81/122 (66%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++ LN+ SC+P EIG L L V D+ F + G LP IG +LE+L+VAHN +
Sbjct: 392 LNEINFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFS 213
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQRPGEECISFLH 361
G+IP S+C LP+LKNFT+S NFF GEP C +P DDR+NC+ RP Q+ EC SFL
Sbjct: 212 GKIPSSICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRRNCLPARPFQKTLVECASFLS 33
Query: 362 QP 367
+P
Sbjct: 32 KP 27
>gb|CG961547.1|CG961547 MBEIS70TF mth2 Medicago truncatula genomic clone 64L19, DNA
sequence
Length = 891
Score = 153 bits (328), Expect = 3e-036
Identities = 58/106 (54%), Positives = 75/106 (70%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++I +N+G +C+P E+G L L V D+SF G LP+ GN LE L+VAHN L+
Sbjct: 551 LNEIIAMNNGFQACLPEEVGLLKNLTVFDVSFNKFLGPLPEKYGNAVGLEVLNVAHNYLS 730
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGR 319
G+IP S+C LP+L NFTYSYNFF GEP +CL +P DDRQNC+ R
Sbjct: 731 GQIPASICALPNLVNFTYSYNFFTGEPPQCLVLPAADDRQNCLQAR 868
>gb|CG930935.1|CG930935 MBELI83TR mth2 Medicago truncatula genomic clone 80M21, DNA
sequence
Length = 885
Score = 142 bits (304), Expect = 6e-033
Identities = 56/110 (50%), Positives = 74/110 (67%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++ LN+ SC+P EIG L L V D+ F + G LP IG +LE+L+VAHN +
Sbjct: 546 LNEINFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFS 725
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQR 331
G+IP S+C LP+LKNFT+S NFF GEP C +P DDR+NC+ RP Q+
Sbjct: 726 GKIPSSICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRRNCLPARPFQK 875
>gb|CG973927.1|CG973927 MBEMP53TF mth2 Medicago truncatula genomic clone 3J10, DNA sequence
Length = 891
Score = 142 bits (304), Expect = 6e-033
Identities = 56/110 (50%), Positives = 74/110 (67%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++ LN+ SC+P EIG L L V D+ F + G LP IG +LE+L+VAHN +
Sbjct: 551 LNEINFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFS 730
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDDRQNCIAGRPDQR 331
G+IP S+C LP+LKNFT+S NFF GEP C +P DDR+NC+ RP Q+
Sbjct: 731 GKIPSSICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRRNCLPARPFQK 880
>gb|AL389835.1|AL389835 MtBC57G04F1 MtBC Medicago truncatula cDNA clone MtBC57G04 T3, mRNA
sequence
Length = 396
Score = 131 bits (280), Expect = 1e-029
Identities = 49/98 (50%), Positives = 70/98 (71%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+N++I+ NS + C+P +IGKL K+ V D+SF G LP++I M++LEQL+VAHN+ +
Sbjct: 102 INEIIMTNSRMKGCLPNDIGKLDKVTVFDVSFNEFVGELPESISGMKSLEQLNVAHNKFS 281
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEVPRVDD 295
G IPES+C LP L+N TYSYN+F GE C+ + DD
Sbjct: 282 GVIPESICRLPRLENLTYSYNYFSGESKICVNLDDKDD 395
>gb|CG966126.1|CG966126 MBEGT01TR mth2 Medicago truncatula genomic clone 52B2, DNA sequence
Length = 822
Score = 117 bits (251), Expect = 1e-025
Identities = 47/90 (52%), Positives = 61/90 (67%)
Frame = +2 / +3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
LN++ LN+ SC+P EIG L L V D+ F + G LP IG +LE+L+VAHN +
Sbjct: 546 LNEINFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFS 725
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G+IP S+C LP+LKNFT+S NFF GEP C
Sbjct: 726 GKIPSSICMLPNLKNFTFSDNFFTGEPPAC 815
>gb|AC149269.11| Medicago truncatula clone mth2-102b19, complete sequence
Length = 128294
Score = 100 bits (212), Expect(2) = 2e-022
Identities = 36/90 (40%), Positives = 61/90 (67%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDT+ ++ +E L++AHN+L+
Sbjct: 43821 IKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLS 43642
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
GE+ + +C L L N T +YNFF G +C
Sbjct: 43641 GELSDIICSLRSLANLTVAYNFFSGFSQQC 43552
Score = 26.7 bits (52), Expect(2) = 2e-022
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -3
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 43509 NCIPGRNMQRPQPEC 43465
>emb|CR505375.1| mth4-39I18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 435
Score = 95.5 bits (202), Expect(2) = 6e-021
Identities = 37/90 (41%), Positives = 58/90 (64%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDTI ++ +E L++AHN L+
Sbjct: 25 LKEILFLNNQLTGCIPQGVGIFTEVQVLDVSFNSLVGHLPDTISCLQDIEVLNLAHNNLS 204
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRC 271
G+I + +C L L N T + NFF G C
Sbjct: 205 GDISDVICSLRSLLNLTVTSNFFSGFSQEC 294
Score = 26.3 bits (51), Expect(2) = 6e-021
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / +1
Query: 290 DDRQNCIAGRPDQRPGEEC 346
D NCI GR Q+P EC
Sbjct: 319 DFSDNCIPGRNMQKPQPEC 375
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 439,449,405
Number of Sequences: 392609
Number of extensions: 5348498
Number of successful extensions: 105709
Number of sequences better than 1.0e-020: 10
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20292994645
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)