TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3588987.2.1
         (487 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BQ154941.1|BQ154941  NF074E06IR1F1051 Irradiated Medicago...   184   6e-046
emb|CT573076.1|  Medicago truncatula chromosome 5 clone mth2...    77   1e-028

>gb|BQ154941.1|BQ154941 NF074E06IR1F1051 Irradiated Medicago truncatula cDNA clone
           NF074E06IR 5', mRNA sequence
          Length = 631

 Score =  184 bits (397), Expect = 6e-046
 Identities = 77/103 (74%), Positives = 87/103 (84%)
 Frame = -1 / +3

                                                                       
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
           LETYQ GLKH   NQELL+GVR CV+QI + SRG+++ EELKERQ KAM DPEIQNIL D
Sbjct: 180 LETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMSDPEIQNILQD 359

                                                      
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
           P+M+QVL D QENP+AAQ H KNPGVM KIQKL+SAGIVQMK*
Sbjct: 360 PVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK* 488




 Score = 85.8 bits (181), Expect(2) = 4e-024
 Identities = 36/53 (67%), Positives = 40/53 (75%)
 Frame = +3 / -1

                                                                
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
           +YFI TIPAL SFWI  ITPGFL C+CAA GFS +S  TC + GS RMF ISG
Sbjct: 490 IYFIWTIPALISFWILSITPGFLVCSCAAFGFSWKSTNTCLITGS*RMF*ISG 332




 Score = 46.0 bits (94), Expect(2) = 4e-024
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3 / -1

                                       
Query: 402 VICSTHLLTPSSNSWFFGXCFRPA**VS 485
           +IC T L TPSSNSW F  CF P+* VS
Sbjct: 265 LICFTQLRTPSSNSWLFASCFNPS*YVS 182



>emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d5, COMPLETE SEQUENCE
          Length = 89591

 Score = 76.7 bits (161), Expect(4) = 1e-028
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = -1 / +2

                                                       
Query: 304   IMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
             +  QVL D QENP+AAQ H KNPGVM KIQKL+SAGIVQMK*
Sbjct: 17924 LCMQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK* 18049




 Score = 46.0 bits (94), Expect(4) = 1e-028
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = -1 / +2

                                            
Query: 487   LETYQAGLKHXPKNQELLDGVRRCVEQITKA 395
             LETYQ GLKH   NQELL+GVRR +    K+
Sbjct: 17393 LETYQEGLKHDANNQELLEGVRRYISYWLKS 17485




 Score = 43.2 bits (88), Expect(4) = 1e-028
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -1 / +2

                                   
Query: 355   QNKAMQDPEIQNILTDPIMQQV 290
             Q KAM DPEIQNIL DP+M+QV
Sbjct: 17786 QAKAMSDPEIQNILQDPVMRQV 17851




 Score = 38.2 bits (77), Expect(4) = 1e-028
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = -1 / +1

                                   
Query: 418   CVEQITKASRGELSEEELKERQ 353
             CV+QI + SRG+++ EELKERQ
Sbjct: 17560 CVKQINRTSRGDVTPEELKERQ 17625



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 424,132,234
Number of Sequences: 392609
Number of extensions: 5001307
Number of successful extensions: 56146
Number of sequences better than 1.0e-020: 3
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 13655093832
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)