TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204486.2.1
(607 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG932131.1|CG932131 MBEDL75TRC mth2 Medicago truncatula ... 147 2e-034
gb|BI309268.1|BI309268 EST530678 GPOD Medicago truncatula c... 142 6e-033
gb|CA917367.1|CA917367 EST641514 GPOD Medicago truncatula c... 142 6e-033
gb|AC152350.18| Medicago truncatula clone mth2-72d18, WORKI... 142 6e-033
gb|BE998753.1|BE998753 EST430540 GVSN Medicago truncatula c... 123 3e-027
gb|DW017721.1|DW017721 EST1226682 MTY Medicago truncatula c... 119 3e-026
gb|AC144516.5| Medicago truncatula clone mth2-28p22, comple... 116 4e-025
emb|CR931738.1| Medicago truncatula chromosome 5 clone mth2... 116 4e-025
gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone m... 89 4e-025
gb|BG645438.1|BG645438 EST507057 KV3 Medicago truncatula cD... 115 6e-025
gb|BM779628.1|BM779628 EST590204 KV2 Medicago truncatula cD... 115 6e-025
gb|AC146791.12| Medicago truncatula clone mth2-123m17, comp... 115 6e-025
gb|CB894749.1|CB894749 EST647541 HOGA Medicago truncatula c... 109 5e-023
gb|AC149471.1| Medicago truncatula chromosome 7 clone mth2-... 108 9e-023
gb|AC150245.6| Medicago truncatula chromosome 7 clone mth2-... 106 2e-022
emb|CR321867.1| mte1-49A11FM1 BAC end, cultivar Jemalong A1... 104 2e-021
gb|AC151725.26| Medicago truncatula clone mth2-164l16, comp... 104 2e-021
gb|AC151728.14| Medicago truncatula clone mth2-48h10, WORKI... 104 2e-021
gb|AC149472.21| Medicago truncatula clone mth2-77f21, WORKI... 104 2e-021
gb|AC145202.23| Medicago truncatula clone mth2-15e9, WORKIN... 104 2e-021
gb|AC162162.15| Medicago truncatula clone mth2-71a20, WORKI... 104 2e-021
gb|AC175049.1| Medicago truncatula chromosome 7 clone mth2-... 104 2e-021
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 101 8e-021
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 101 8e-021
>gb|CG932131.1|CG932131 MBEDL75TRC mth2 Medicago truncatula genomic clone 32N6, DNA
sequence
Length = 708
Score = 147 bits (315), Expect = 2e-034
Identities = 58/99 (58%), Positives = 73/99 (73%)
Frame = +3 / -2
Query: 9 IARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLT 188
I R Y + + + +SI WQ+PQYF+IG AEVFT +GQ+EFFY QAPDAMRS+C+ALSLT
Sbjct: 428 IVRKNNYYDLEPILMSIFWQVPQYFLIGAAEVFTNIGQMEFFYGQAPDAMRSLCAALSLT 249
Query: 189 TVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
T ALGNY+S R+G +GWIP+N+NRGHLD
Sbjct: 248 TNALGNYVSTLLVTIVTKVTTRNGSLGWIPDNMNRGHLD 132
>gb|BI309268.1|BI309268 EST530678 GPOD Medicago truncatula cDNA clone pGPOD-11M19 5' end,
mRNA sequence
Length = 621
Score = 142 bits (304), Expect = 6e-033
Identities = 52/87 (59%), Positives = 66/87 (75%)
Frame = +3 / +2
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
VP+S+ WQIPQY I+G AE+FTFVGQLEFFY+++PDAMR++C AL L +LGNYLS
Sbjct: 203 VPLSVLWQIPQYLILGAAEIFTFVGQLEFFYEESPDAMRTICGALPLLNFSLGNYLSSFI 382
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHLD 305
+ GR+GWIP+NLN+GHLD
Sbjct: 383 LTIVTYFTTKGGRLGWIPDNLNKGHLD 463
>gb|CA917367.1|CA917367 EST641514 GPOD Medicago truncatula cDNA clone GPOD-35N18, mRNA
sequence
Length = 747
Score = 142 bits (304), Expect = 6e-033
Identities = 52/87 (59%), Positives = 66/87 (75%)
Frame = +3 / +1
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
VP+S+ WQIPQY I+G AE+FTFVGQLEFFY+++PDAMR++C AL L +LGNYLS
Sbjct: 385 VPLSVLWQIPQYLILGAAEIFTFVGQLEFFYEESPDAMRTICGALPLLNFSLGNYLSSFI 564
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHLD 305
+ GR+GWIP+NLN+GHLD
Sbjct: 565 LTIVTYFTTKGGRLGWIPDNLNKGHLD 645
>gb|AC152350.18| Medicago truncatula clone mth2-72d18, WORKING DRAFT SEQUENCE, 6
unordered pieces
Length = 113547
Score = 142 bits (304), Expect = 6e-033
Identities = 52/87 (59%), Positives = 66/87 (75%)
Frame = +3 / -2
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXX 224
VP+S+ WQIPQY I+G AE+FTFVGQLEFFY+++PDAMR++C AL L +LGNYLS
Sbjct: 4370 VPLSVLWQIPQYLILGAAEIFTFVGQLEFFYEESPDAMRTICGALPLLNFSLGNYLSSFI 4191
Query: 225 XXXXXXXXXRHGRIGWIPENLNRGHLD 305
+ GR+GWIP+NLN+GHLD
Sbjct: 4190 LTIVTYFTTKGGRLGWIPDNLNKGHLD 4110
>gb|BE998753.1|BE998753 EST430540 GVSN Medicago truncatula cDNA clone pGVSN-13K23, mRNA
sequence
Length = 809
Score = 123 bits (263), Expect = 3e-027
Identities = 48/67 (71%), Positives = 57/67 (85%)
Frame = +3 / +3
Query: 15 RHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTV 194
R Y E + +P++I WQ+PQYF+IGCAEVFTF+GQLEFFY+QAPDAMRS+CSALSL TV
Sbjct: 597 RRNNYYELEEIPMTIFWQVPQYFLIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSLLTV 776
Query: 195 ALGNYLS 215
A G YLS
Sbjct: 777 AFGQYLS 797
>gb|DW017721.1|DW017721 EST1226682 MTY Medicago truncatula cDNA clone MTYAX21, mRNA
sequence
Length = 855
Score = 119 bits (255), Expect = 3e-026
Identities = 46/57 (80%), Positives = 53/57 (92%)
Frame = +3 / +1
Query: 45 VPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLS 215
VP++I WQIPQYF++G AEVFTFVGQLEFFYDQ+PDAMRS+CSALSL T +LGNYLS
Sbjct: 574 VPLTILWQIPQYFLLGAAEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTSLGNYLS 744
>gb|AC144516.5| Medicago truncatula clone mth2-28p22, complete sequence
Length = 111130
Score = 116 bits (247), Expect = 4e-025
Identities = 48/110 (43%), Positives = 60/110 (54%)
Frame = +3 / +1
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXX 230
+SI WQIPQY +IG +EVF +VGQLEFF Q PD ++S SAL +T+++LGNY+S
Sbjct: 10699 LSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVS 10878
Query: 231 XXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYK 380
GWIP NLN+GHLD A WYK
Sbjct: 10879 VVMKISTEDHMPGWIPVNLNKGHLDRFYFLLAALTSMDLIAYIACAKWYK 11028
>emb|CR931738.1| Medicago truncatula chromosome 5 clone mth2-56k10, COMPLETE SEQUENCE
Length = 132450
Score = 116 bits (247), Expect = 4e-025
Identities = 48/110 (43%), Positives = 60/110 (54%)
Frame = +3 / +2
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXX 230
+SI WQIPQY +IG +EVF +VGQLEFF Q PD ++S SAL +T+++LGNY+S
Sbjct: 119798 LSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVS 119977
Query: 231 XXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYK 380
GWIP NLN+GHLD A WYK
Sbjct: 119978 VVMKISTEDHMPGWIPVNLNKGHLDRFYFLLAALTSMDLIAYIACAKWYK 120127
>gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone mth2-139i2, complete
sequence
Length = 93434
Score = 88.6 bits (187), Expect(2) = 4e-025
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +3 / +2
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLS 215
+SI WQ+PQY +IG +EVF +VGQLEFF QAPD ++S SAL +T+++LGNY+S
Sbjct: 53456 LSIFWQVPQYVLIGASEVFMYVGQLEFFNSQAPDGLKSFGSALCMTSISLGNYVS 53620
Score = 46.9 bits (96), Expect(2) = 4e-025
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +3 / +2
Query: 258 GRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYKYKK 389
G +GWIP NLN GHLD +A WYKY K
Sbjct: 53666 GMLGWIPGNLNMGHLDRFYFLLAALTAADLLVYIAMARWYKYVK 53797
>gb|BG645438.1|BG645438 EST507057 KV3 Medicago truncatula cDNA clone pKV3-46A20 5' end,
mRNA sequence
Length = 835
Score = 115 bits (246), Expect = 6e-025
Identities = 50/124 (40%), Positives = 65/124 (52%)
Frame = +3 / -3
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
+ D +SI WQIPQY +IG +EVF +VGQLEFF Q PD ++S SAL +T+++LGNY+
Sbjct: 743 QGDTSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYV 564
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYKYKKT 392
S GWIP NLNRGHLD A W++ +
Sbjct: 563 SSLIVSIVMKISTEDHMPGWIPGNLNRGHLDRFFFLLAVLTSLDLIAYIACAKWFQNIQM 384
Query: 393 ADDY 404
A Y
Sbjct: 383 ACKY 372
>gb|BM779628.1|BM779628 EST590204 KV2 Medicago truncatula cDNA clone pKV2-52H23, mRNA
sequence
Length = 780
Score = 115 bits (246), Expect = 6e-025
Identities = 50/124 (40%), Positives = 65/124 (52%)
Frame = +3 / -3
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
+ D +SI WQIPQY +IG +EVF +VGQLEFF Q PD ++S SAL +T+++LGNY+
Sbjct: 634 QGDTSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYV 455
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYKYKKT 392
S GWIP NLNRGHLD A W++ +
Sbjct: 454 SSLIVSIVMKISTEDHMPGWIPGNLNRGHLDRFFFLLAVLTSLDLIAYIACAKWFQNIQM 275
Query: 393 ADDY 404
A Y
Sbjct: 274 ACKY 263
>gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete sequence
Length = 130971
Score = 115 bits (246), Expect = 6e-025
Identities = 50/124 (40%), Positives = 65/124 (52%)
Frame = +3 / -3
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
+ D +SI WQIPQY +IG +EVF +VGQLEFF Q PD ++S SAL +T+++LGNY+
Sbjct: 39664 QGDTSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYV 39485
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXXIASWYKYKKT 392
S GWIP NLNRGHLD A W++ +
Sbjct: 39484 SSLIVSIVMKISTEDHMPGWIPGNLNRGHLDRFFFLLAVLTSLDLIAYIACAKWFQNIQM 39305
Query: 393 ADDY 404
A Y
Sbjct: 39304 ACKY 39293
>gb|CB894749.1|CB894749 EST647541 HOGA Medicago truncatula cDNA clone HOGA-32E10, mRNA
sequence
Length = 733
Score = 109 bits (232), Expect = 5e-023
Identities = 41/74 (55%), Positives = 53/74 (71%)
Frame = +3 / +3
Query: 84 IIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXXXXXXXXXRHGR 263
++G +EVFTF+GQLEFFYD++PDAMR++C AL L + + GNYLS + GR
Sbjct: 3 LLGASEVFTFIGQLEFFYDESPDAMRTLCGALPLLSFSSGNYLSSFILTIVTYFTTQGGR 182
Query: 264 IGWIPENLNRGHLD 305
GWIP+NLN GHLD
Sbjct: 183 PGWIPDNLNSGHLD 224
>gb|AC149471.1| Medicago truncatula chromosome 7 clone mth2-65l2, *** SEQUENCING IN
PROGRESS ***, 8 unordered pieces
Length = 138257
Score = 108 bits (230), Expect = 9e-023
Identities = 43/85 (50%), Positives = 58/85 (68%)
Frame = +3 / +2
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXX 230
+SI +QIPQY +IG +EVF +VGQLEFF QAPD ++S S+L + +++LGNY+S
Sbjct: 52130 MSIFYQIPQYVLIGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMLVH 52309
Query: 231 XXXXXXXRHGRIGWIPENLNRGHLD 305
R GWIPENLN+GH+D
Sbjct: 52310 VVMKITARGNDKGWIPENLNKGHMD 52384
>gb|AC150245.6| Medicago truncatula chromosome 7 clone mth2-48m18, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 119521
Score = 106 bits (227), Expect = 2e-022
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +3 / -3
Query: 33 EDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYL 212
E+ +SI +QIPQY ++G +EVF +VGQLEFF QAPD ++S S+L + +++LGNY+
Sbjct: 46061 EEKASSLSIFYQIPQYVLVGASEVFVYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYV 45882
Query: 213 SXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
S + +GWIP NLN GH+D
Sbjct: 45881 SSMMVKSVMKITTKGEELGWIPNNLNDGHMD 45789
>emb|CR321867.1| mte1-49A11FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 769
Score = 104 bits (221), Expect = 2e-021
Identities = 44/133 (33%), Positives = 65/133 (48%)
Frame = +3 / -1
Query: 3 RAIARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALS 182
R HGL VP+SI +PQ+ ++G A+ F V ++EFFYDQAP++M+S+ ++ S
Sbjct: 694 RVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYS 515
Query: 183 LTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXX 362
TT+ +GN++S HG GWI NLN HLD
Sbjct: 514 STTLGVGNFISSFLLSTVSHITQEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLAFFAF 335
Query: 363 IASWYKYKKTADD 401
+ +Y Y+ D
Sbjct: 334 VTRFYVYRAEVSD 296
>gb|AC151725.26| Medicago truncatula clone mth2-164l16, complete sequence
Length = 115069
Score = 104 bits (221), Expect = 2e-021
Identities = 41/99 (41%), Positives = 60/99 (60%)
Frame = +3 / -2
Query: 9 IARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLT 188
I + ++G DIVP+SI W +PQY +IG A+VF +G LEFFYDQ+P+ M+S+ + +
Sbjct: 13269 IKENHIFGPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTS 13090
Query: 189 TVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
+ +GN+L+ R R WI +NLN HLD
Sbjct: 13089 GIGVGNFLNSFLVTMTDKITGRGDRKSWIADNLNDSHLD 12973
>gb|AC151728.14| Medicago truncatula clone mth2-48h10, WORKING DRAFT SEQUENCE, 19
unordered pieces
Length = 159180
Score = 104 bits (221), Expect = 2e-021
Identities = 41/99 (41%), Positives = 60/99 (60%)
Frame = +3 / -1
Query: 9 IARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLT 188
I + ++G DIVP+SI W +PQY +IG A+VF +G LEFFYDQ+P+ M+S+ + +
Sbjct: 37911 IKENHIFGPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTS 37732
Query: 189 TVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
+ +GN+L+ R R WI +NLN HLD
Sbjct: 37731 GIGVGNFLNSFLVTMTDKITGRGDRKSWIADNLNDSHLD 37615
>gb|AC149472.21| Medicago truncatula clone mth2-77f21, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 124565
Score = 104 bits (221), Expect = 2e-021
Identities = 41/99 (41%), Positives = 60/99 (60%)
Frame = +3 / -3
Query: 9 IARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLT 188
I + ++G DIVP+SI W +PQY +IG A+VF +G LEFFYDQ+P+ M+S+ + +
Sbjct: 7905 IKENHIFGPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQSPEDMQSLGTTFFTS 7726
Query: 189 TVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
+ +GN+L+ R R WI +NLN HLD
Sbjct: 7725 GIGVGNFLNSFLVTMTDKITGRGDRKSWIADNLNDSHLD 7609
>gb|AC145202.23| Medicago truncatula clone mth2-15e9, WORKING DRAFT SEQUENCE
Length = 89293
Score = 104 bits (221), Expect = 2e-021
Identities = 44/133 (33%), Positives = 65/133 (48%)
Frame = +3 / -2
Query: 3 RAIARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALS 182
R HGL VP+SI +PQ+ ++G A+ F V ++EFFYDQAP++M+S+ ++ S
Sbjct: 74505 RVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYS 74326
Query: 183 LTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXX 362
TT+ +GN++S HG GWI NLN HLD
Sbjct: 74325 STTLGVGNFISSFLLSTVSHITQEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLAFFAF 74146
Query: 363 IASWYKYKKTADD 401
+ +Y Y+ D
Sbjct: 74145 VTRFYVYRAEVSD 74107
>gb|AC162162.15| Medicago truncatula clone mth2-71a20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 132597
Score = 104 bits (221), Expect = 2e-021
Identities = 44/133 (33%), Positives = 65/133 (48%)
Frame = +3 / +3
Query: 3 RAIARHGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALS 182
R HGL VP+SI +PQ+ ++G A+ F V ++EFFYDQAP++M+S+ ++ S
Sbjct: 62895 RVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYS 63074
Query: 183 LTTVALGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLDXXXXXXXXXXXXXXXXXXX 362
TT+ +GN++S HG GWI NLN HLD
Sbjct: 63075 STTLGVGNFISSFLLSTVSHITQEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLAFFAF 63254
Query: 363 IASWYKYKKTADD 401
+ +Y Y+ D
Sbjct: 63255 VTRFYVYRAEVSD 63293
>gb|AC175049.1| Medicago truncatula chromosome 7 clone mth2-90h6, *** SEQUENCING IN
PROGRESS ***, 6 unordered pieces
Length = 115143
Score = 104 bits (221), Expect = 2e-021
Identities = 39/96 (40%), Positives = 62/96 (64%)
Frame = +3 / +1
Query: 18 HGLYGEDDIVPISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVA 197
H L G+ D P+SI +PQ+ ++G A+ F + ++EFFYDQAP++M+S+ S+ + T+++
Sbjct: 28348 HNLLGKLDTTPLSIFILVPQFALMGIADTFVEIAKIEFFYDQAPESMKSLGSSYATTSLS 28527
Query: 198 LGNYLSXXXXXXXXXXXXRHGRIGWIPENLNRGHLD 305
+GN+LS +HG GWI +NLN HLD
Sbjct: 28528 MGNFLSTFLLSNVARLTSKHGHKGWILDNLNISHLD 28635
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete sequence
Length = 103090
Score = 101 bits (216), Expect = 8e-021
Identities = 41/85 (48%), Positives = 55/85 (64%)
Frame = +3 / -2
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXX 230
+SI QIPQY ++G +EVF +VGQLEFF QAPD ++S S+L + +++LGNY+S
Sbjct: 18933 LSIFCQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMMVK 18754
Query: 231 XXXXXXXRHGRIGWIPENLNRGHLD 305
R GWIP NLN GH+D
Sbjct: 18753 LVMIFTARGEEPGWIPNNLNVGHMD 18679
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 101 bits (216), Expect = 8e-021
Identities = 41/85 (48%), Positives = 55/85 (64%)
Frame = +3 / -2
Query: 51 ISICWQIPQYFIIGCAEVFTFVGQLEFFYDQAPDAMRSMCSALSLTTVALGNYLSXXXXX 230
+SI QIPQY ++G +EVF +VGQLEFF QAPD ++S S+L + +++LGNY+S
Sbjct: 90331 LSIFCQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISLGNYVSSMMVK 90152
Query: 231 XXXXXXXRHGRIGWIPENLNRGHLD 305
R GWIP NLN GH+D
Sbjct: 90151 LVMIFTARGEEPGWIPNNLNVGHMD 90077
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 467,199,597
Number of Sequences: 392609
Number of extensions: 5530190
Number of successful extensions: 34595
Number of sequences better than 1.0e-020: 33
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 18712535992
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)