TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ848515.1|AJ848515 AJ848515 MtSN4 Medicago truncatula c... 144 9e-038
gb|AC141110.7| Medicago truncatula clone mth2-17i10, comple... 130 1e-037
gb|AC126012.22| Medicago truncatula clone mth2-27p4, comple... 130 1e-037
emb|AJ620946.1| Medicago truncatula PG3 gene for polygalact... 130 1e-037
gb|AC144656.12| Medicago truncatula clone mth2-27d4, comple... 107 1e-037
gb|AC146558.16| Medicago truncatula clone mth2-12a23, WORKI... 143 1e-036
gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone m... 112 2e-036
gb|BG588797.1|BG588797 EST490606 MHRP- Medicago truncatula ... 128 2e-036
emb|CR297946.1| mte1-15M11FM1 BAC end, cultivar Jemalong A1... 136 9e-032
gb|CX539149.1|CX539149 s13dNF60F08GS063_461558 Germinating ... 138 9e-032
gb|BF645495.1|BF645495 NF020D02EC1F1025 Elicited cell cultu... 137 2e-031
gb|AC144760.27| Medicago truncatula clone mth2-8p15, comple... 91 2e-030
gb|BG452808.1|BG452808 NF081A01LF1F1001 Developing leaf Med... 100 3e-029
emb|CT030211.4| M.truncatula DNA sequence from clone MTH2-8... 61 1e-028
gb|AC124965.18| Medicago truncatula clone mth2-7h21, comple... 61 6e-028
gb|AC148969.4| Medicago truncatula chromosome 2 clone mth2-... 49 3e-026
gb|CX524955.1|CX524955 s13dNF13H06AT060_478544 Aphid-Infect... 120 3e-026
gb|AC157892.2| Medicago truncatula chromosome 7 clone mte1-... 59 4e-026
gb|AC148340.3| Medicago truncatula chromosome 2 BAC clone m... 49 8e-026
gb|BQ148150.1|BQ148150 NF062C04FL1F1034 Developing flower M... 116 4e-025
gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (... 64 4e-025
gb|CA989936.1|CA989936 EST643444 GESD Medicago truncatula c... 112 2e-024
gb|AC166237.5| Medicago truncatula clone mth2-6a22, WORKING... 64 4e-024
gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone m... 51 3e-023
gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone m... 52 2e-022
gb|AC144805.7| Medicago truncatula clone mth2-72a11, comple... 64 3e-022
emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2... 62 1e-021
gb|AC153001.7| Medicago truncatula clone mth2-95k24, comple... 64 3e-021
gb|AC124961.19| Medicago truncatula clone mth2-18l7, comple... 64 3e-021
gb|AC155892.1| Medicago truncatula chromosome 7 clone mth2-... 64 4e-021
>gb|AJ848515.1|AJ848515 AJ848515 MtSN4 Medicago truncatula cDNA clone MtN408H03N1, mRNA
sequence
Length = 677
Score = 144 bits (308), Expect(2) = 9e-038
Identities = 56/123 (45%), Positives = 84/123 (68%)
Frame = +1 / -1
Query: 16 TISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
++SGI + NS+ H+ D+ ++ V D+ ++P D NTDG+H+ S +V I+ ST+ G
Sbjct: 518 SVSGITIQNSQQTHLKFDSCTNVQVFDITTSSPGDSPNTDGIHLQNSQDVVISGSTLSCG 339
Query: 196 DDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIK 375
DDCVSI G ++V+N+ CGPG GIS+G LG+ + VS+VTVRD L+NT GVRIK
Sbjct: 338 DDCVSIQTGCSNILVHNVNCGPGHGISIGSLGKENTKACVSNVTVRDVTLQNTLTGVRIK 159
Query: 376 SYE 384
+++
Sbjct: 158 TWQ 150
Score = 35.0 bits (70), Expect(2) = 9e-038
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -1
Query: 403 TASHLTFENIRMEEVANPIIIDQYFCPQKVC 495
+ ++ F NI++ +V PI+IDQ++C C
Sbjct: 137 SVQNIMFSNIQVSDVKTPIMIDQFYCDGGKC 45
>gb|AC141110.7| Medicago truncatula clone mth2-17i10, complete sequence
Length = 113345
Score = 130 bits (279), Expect(2) = 1e-037
Identities = 50/114 (43%), Positives = 72/114 (63%)
Frame = +1 / -1
Query: 154 SSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVR 333
+ +V++ N+ I TGDDC+S+G GS + V N+ CGPG GISVG LG+ E+ V V+
Sbjct: 95501 TDDVKVLNTNISTGDDCISLGQGSRQITVQNVNCGPGHGISVGSLGKNPKEEATEHVLVK 95322
Query: 334 DCVLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVC 495
+C + NT NGVRIK++ + + + FE+ M V NP+IIDQ +CP C
Sbjct: 95321 NCTISNTDNGVRIKTWPSSPGTSPITDMHFEDTIMVNVLNPVIIDQEYCPWNQC 95160
Score = 47.8 bits (98), Expect(2) = 1e-037
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1 / -1
Query: 40 NSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSN 162
+SK FH+N+ + T + ITAPA +NTDG+H+G S++
Sbjct: 95618 DSKNFHVNVLGCTNFTFDGLTITAPATSKNTDGIHIGRSTD 95496
>gb|AC126012.22| Medicago truncatula clone mth2-27p4, complete sequence
Length = 108900
Score = 130 bits (279), Expect(2) = 1e-037
Identities = 50/114 (43%), Positives = 72/114 (63%)
Frame = +1 / -3
Query: 154 SSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVR 333
+ +V++ N+ I TGDDC+S+G GS + V N+ CGPG GISVG LG+ E+ V V+
Sbjct: 40279 TDDVKVLNTNISTGDDCISLGQGSRQITVQNVNCGPGHGISVGSLGKNPKEEATEHVLVK 40100
Query: 334 DCVLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVC 495
+C + NT NGVRIK++ + + + FE+ M V NP+IIDQ +CP C
Sbjct: 40099 NCTISNTDNGVRIKTWPSSPGTSPITDMHFEDTIMVNVLNPVIIDQEYCPWNQC 39938
Score = 47.8 bits (98), Expect(2) = 1e-037
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1 / -3
Query: 40 NSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSN 162
+SK FH+N+ + T + ITAPA +NTDG+H+G S++
Sbjct: 40396 DSKNFHVNVLGCTNFTFDGLTITAPATSKNTDGIHIGRSTD 40274
>emb|AJ620946.1| Medicago truncatula PG3 gene for polygalacturonase precursor, exons
1-4
Length = 2050
Score = 130 bits (279), Expect(2) = 1e-037
Identities = 50/114 (43%), Positives = 72/114 (63%)
Frame = +1 / +2
Query: 154 SSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVR 333
+ +V++ N+ I TGDDC+S+G GS + V N+ CGPG GISVG LG+ E+ V V+
Sbjct: 1406 TDDVKVLNTNISTGDDCISLGQGSRQITVQNVNCGPGHGISVGSLGKNPKEEATEHVLVK 1585
Query: 334 DCVLRNTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPQKVC 495
+C + NT NGVRIK++ + + + FE+ M V NP+IIDQ +CP C
Sbjct: 1586 NCTISNTDNGVRIKTWPSSPGTSPITDMHFEDTIMVNVLNPVIIDQEYCPWNQC 1747
Score = 47.8 bits (98), Expect(2) = 1e-037
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1 / +2
Query: 40 NSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSN 162
+SK FH+N+ + T + ITAPA +NTDG+H+G S++
Sbjct: 1289 DSKNFHVNVLGCTNFTFDGLTITAPATSKNTDGIHIGRSTD 1411
>gb|AC144656.12| Medicago truncatula clone mth2-27d4, complete sequence
Length = 102057
Score = 107 bits (229), Expect(4) = 1e-037
Identities = 44/88 (50%), Positives = 60/88 (68%)
Frame = +1 / +1
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N +SG+ LNSK HI +D K++ +KDV I AP+ NTDG++V S+ V I++STI
Sbjct: 69100 NVLVSGLTSLNSKAIHIAVDHCKNVVIKDVKIRAPSRSPNTDGINVQFSTGVTISHSTIM 69279
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGI 273
TGDDC+SI G+ V ++ I CGPG GI
Sbjct: 69280 TGDDCISINQGTTHVWIDRIACGPGHGI 69363
Score = 52.4 bits (108), Expect(4) = 1e-037
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +1 / +3
Query: 514 SSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEY 651
+S V I V++++I GTS++P A+ CS++ PC G+ L D+N+ Y
Sbjct: 70905 NSGVKISSVSYQHIKGTSASPVAIKFDCSQSNPCLGLKLQDINLIY 71042
Score = 42.8 bits (87), Expect(4) = 1e-037
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +1 / +3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSY 381
S+G LG +E V +VTV D V T NGVRIKS+
Sbjct: 69936 SIGSLGSDSNEAGVENVTVTDSVFTKTQNGVRIKSW 70043
Score = 36.8 bits (74), Expect(4) = 1e-037
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQKVCP 498
A + F N+ M+ V PIIIDQ +C + CP
Sbjct: 70065 ARDINFRNLIMQNVYYPIIIDQRYCTKTDCP 70157
>gb|AC146558.16| Medicago truncatula clone mth2-12a23, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 126642
Score = 143 bits (306), Expect(2) = 1e-036
Identities = 55/126 (43%), Positives = 83/126 (65%)
Frame = +1 / -1
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
TNG I + NSK H + ++T+ + I AP D NTDG+ +G S+ + IT+ I
Sbjct: 67209 TNGYIHHMHSFNSKQSHFGLYRCNNMTLTKLQIKAPGDSPNTDGIKIGKSTGINITSVNI 67030
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
TG+DC+S+ G V + ++ CGPG GI++G LG+Y+DE+D++D+ V++C T+NGV
Sbjct: 67029 RTGNDCISMLSGLKNVQIMDVYCGPGHGINIGSLGKYEDEEDLADIIVKNCTFNGTSNGV 66850
Query: 367 RIKSYE 384
RIKSYE
Sbjct: 66849 RIKSYE 66832
Score = 32.2 bits (64), Expect(2) = 1e-036
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1 / -1
Query: 400 LTASHLTFENIRMEEVANPIIIDQYFC 480
+ AS+ +E+I ME V I+IDQ++C
Sbjct: 66813 VVASNFIYEDIVMENVEYHIVIDQHYC 66733
>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete
sequence
Length = 132817
Score = 112 bits (240), Expect(4) = 2e-036
Identities = 42/73 (57%), Positives = 57/73 (78%)
Frame = +1 / +1
Query: 163 VRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCV 342
+ IT+S I TGDDC+SIG GS + + N+TCGPG GISVG LG+Y +E+ + +TVR+C
Sbjct: 15571 INITSSYISTGDDCISIGDGSKQITILNVTCGPGHGISVGSLGKYSNEEPLEYITVRNCT 15750
Query: 343 LRNTTNGVRIKSY 381
LRNT NG+RIK++
Sbjct: 15751 LRNTDNGLRIKTW 15789
Score = 42.3 bits (86), Expect(4) = 2e-036
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1 / +3
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENT 132
N I GI +SK+FH+N+ K++T D + TAPA N+
Sbjct: 15420 NSIIKGITSKDSKYFHVNVFGCKNLTFMDFSATAPATSPNS 15542
Score = 30.9 bits (61), Expect(4) = 2e-036
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1 / +1
Query: 409 SHLTFENIRMEEVANPIII 465
S+L FENI M+ V+NP+II
Sbjct: 15820 SNLHFENIIMDNVSNPVII 15876
Score = 24.0 bits (46), Expect(4) = 2e-036
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1 / +2
Query: 127 NTDGVHVGGSS 159
NTDG+H+G S+
Sbjct: 15545 NTDGIHIGKST 15577
>gb|BG588797.1|BG588797 EST490606 MHRP- Medicago truncatula cDNA clone pMHRP-57F15, mRNA
sequence
Length = 631
Score = 128 bits (275), Expect(3) = 2e-036
Identities = 53/121 (43%), Positives = 75/121 (61%)
Frame = +1 / +2
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
+ ++ +S+ H+ + ++ V ++ + AP D NTDG+HV + N+ I N IGTGD
Sbjct: 8 VKNLRFKDSQQMHVVFERCFNVFVSNLIVRAPEDSPNTDGIHVAETQNIDIINCDIGTGD 187
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DC+SI GS V +ITCGPG GIS+G LG E +VS+V V L TTNGVRIK+
Sbjct: 188 DCISIVSGSKNVRAIDITCGPGHGISIGSLGADNSEAEVSNVVVNRAALTGTTNGVRIKT 367
Query: 379 Y 381
+
Sbjct: 368 W 370
Score = 36.8 bits (74), Expect(3) = 2e-036
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQY 474
A ++ F NI+M+ V NP+IIDQY
Sbjct: 390 ARNIKFMNIKMQNVTNPVIIDQY 458
Score = 26.7 bits (52), Expect(3) = 2e-036
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1 / +1
Query: 523 VSIKDVTFRNISGTSSTPEAVSLLCS 600
V + V ++NI GTS++ A+ CS
Sbjct: 502 VQLSQVLYQNIRGTSASEIAIKFNCS 579
>emb|CR297946.1| mte1-15M11FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 708
Score = 136 bits (291), Expect(2) = 9e-032
Identities = 52/126 (41%), Positives = 84/126 (66%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
TNG + + ++SK H + +++ ++ + ITAP D NTDG+ +G S + I++ I
Sbjct: 186 TNGYVHDMHSIDSKQSHFVLFGCENMLLRGLKITAPKDSPNTDGIKIGMSKGINISSVNI 365
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GTGDDC+++ G+ V ++++ CGPG GISVG LG + E+D+ D+ V++C T+NGV
Sbjct: 366 GTGDDCIAMLSGTRNVRISDVFCGPGHGISVGSLGGNEGEEDIDDIVVKNCTFNGTSNGV 545
Query: 367 RIKSYE 384
RIKS+E
Sbjct: 546 RIKSWE 563
Score = 22.6 bits (43), Expect(2) = 9e-032
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +1 / +1
Query: 454 PIIIDQYFCPQKVC 495
PI+IDQ +C C
Sbjct: 637 PIVIDQDYCSHPPC 678
>gb|CX539149.1|CX539149 s13dNF60F08GS063_461558 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 614
Score = 138 bits (297), Expect = 9e-032
Identities = 57/123 (46%), Positives = 79/123 (64%)
Frame = +1 / +3
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N I GIK +N K FH+ + +I ++ + +TAP NTDG+H+ S V+I TIG
Sbjct: 246 NAIIMGIKSVNPKGFHVFVTQCSNIRLQRLRLTAPDTSPNTDGIHISTSYGVKINRCTIG 425
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVR 369
TGDDCV + GS+ + +N + CGPG GIS+G LGR DE++V V V++ L T NG+R
Sbjct: 426 TGDDCVGMIDGSEQIAINKLECGPGHGISIGSLGRRADEREVKGVRVQNSELIGTDNGLR 605
Query: 370 IKS 378
IKS
Sbjct: 606 IKS 614
>gb|BF645495.1|BF645495 NF020D02EC1F1025 Elicited cell culture Medicago truncatula cDNA
clone NF020D02EC 5', mRNA sequence
Length = 680
Score = 137 bits (294), Expect = 2e-031
Identities = 57/121 (47%), Positives = 76/121 (62%)
Frame = +1 / +3
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N T++GI + NS H+ D + V DV I++P D NTDG+H+ S +V I ST+
Sbjct: 318 NPTVTGITIQNSPQCHLKFDNCNGVLVHDVTISSPGDSPNTDGIHLQNSRDVLIYKSTMA 497
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVR 369
GDDC+SI G V V+N+ CGPG GIS+G LG+ VS++TVRD + NT NGVR
Sbjct: 498 CGDDCISIQTGCSNVYVHNVDCGPGHGISIGGLGKDNTRACVSNITVRDVNMHNTMNGVR 677
Query: 370 I 372
I
Sbjct: 678 I 680
>gb|AC144760.27| Medicago truncatula clone mth2-8p15, complete sequence
Length = 108569
Score = 90.9 bits (192), Expect(4) = 2e-030
Identities = 35/64 (54%), Positives = 47/64 (73%)
Frame = +1 / -2
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRI 372
GDDCVSI G ++V+N+ CGPG GIS+G LG+ + VS+VTVRD L+NT GVRI
Sbjct: 33760 GDDCVSIQTGCSNILVHNVNCGPGHGISIGSLGKENTKACVSNVTVRDVTLQNTLTGVRI 33581
Query: 373 KSYE 384
K+++
Sbjct: 33580 KTWQ 33569
Score = 58.8 bits (122), Expect(4) = 2e-030
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +1 / -1
Query: 16 TISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
++SGI + NS+ H+ D+ ++ V D+ ++P D NTDG+H+ S +V I+ ST+ G
Sbjct: 34022 SVSGITIQNSQQTHLKFDSCTNVQVFDITTSSPGDSPNTDGIHLQNSQDVVISGSTLSCG 33843
Score = 35.0 bits (70), Expect(4) = 2e-030
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1 / -3
Query: 403 TASHLTFENIRMEEVANPIIIDQYFCPQKVC 495
+ ++ F NI++ +V PI+IDQ++C C
Sbjct: 33018 SVQNIMFSNIQVSDVKTPIMIDQFYCDGGKC 32926
Score = 30.9 bits (61), Expect(4) = 2e-030
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1 / -3
Query: 571 TPEAVSLLCSETQPCSGVSLIDVNVEYAGKNN 666
T E + CS++ PC G++L + +E + +N
Sbjct: 32862 TKEPIYFACSDSLPCKGITLDTIKLESSQNSN 32767
>gb|BG452808.1|BG452808 NF081A01LF1F1001 Developing leaf Medicago truncatula cDNA clone
NF081A01LF 5', mRNA sequence
Length = 583
Score = 100 bits (213), Expect(2) = 3e-029
Identities = 40/89 (44%), Positives = 57/89 (64%)
Frame = +1 / +2
Query: 118 DVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRY 297
D NTDG+H+ S+NV + + IGTGDDC+SI S + + I CGPG GIS+G LG+
Sbjct: 2 DSPNTDGIHISESTNVIVQDCKIGTGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKD 181
Query: 298 KDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
V+ V + L+ TTNG+RIK+++
Sbjct: 182 NSTGVVTKVILDTAFLKGTTNGLRIKTWQ 268
Score = 49.6 bits (102), Expect(2) = 3e-029
Identities = 17/48 (35%), Positives = 35/48 (72%)
Frame = +1 / +2
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVE 648
++ SS + I ++ ++N+SGT+++ +A+ CS+T PCS + L +V++E
Sbjct: 377 QNQSSALEISEIMYQNVSGTTNSAKAIKFDCSDTVPCSNLVLSNVDLE 520
>emb|CT030211.4| M.truncatula DNA sequence from clone MTH2-85A3 on chromosome 3,
complete sequence
Length = 78707
Score = 61.1 bits (127), Expect(5) = 1e-028
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1 / +3
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N + I+ N++ H+ I ++ ++ +TAP NTDG+H+ S NV ITNSTIG
Sbjct: 53112 NLKVDKIRFRNAQQMHLRIQGCNNVWASNLIVTAPGHSPNTDGIHITHSQNVFITNSTIG 53291
Query: 190 TG 195
TG
Sbjct: 53292 TG 53297
Score = 48.3 bits (99), Expect(5) = 1e-028
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1 / +3
Query: 514 SSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
+S V + +V ++NI GTS++ A+ L CS+ PC G+ L DV +
Sbjct: 55455 NSAVELSNVMYQNIKGTSASEVAIKLECSKAVPCKGIHLQDVKI 55586
Score = 46.0 bits (94), Expect(5) = 1e-028
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDC+SI GS V +ITCGPG GI
Sbjct: 53770 GDDCISIVSGSKNVRATDITCGPGHGI 53850
Score = 39.1 bits (79), Expect(5) = 1e-028
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1 / +3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG + +VS+V V L TTNGVRIK+++
Sbjct: 53940 SIGSLGGGNTQAEVSNVEVNRATLIGTTNGVRIKTWQ 54050
Score = 37.3 bits (75), Expect(5) = 1e-028
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQK 489
A ++ F NI + V NPIIIDQ +C QK
Sbjct: 54779 ARNIKFINIVVRNVTNPIIIDQKYCDQK 54862
>gb|AC124965.18| Medicago truncatula clone mth2-7h21, complete sequence
Length = 122160
Score = 61.1 bits (127), Expect(5) = 6e-028
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1 / -3
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N + I+ N++ H+ I ++ ++ +TAP NTDG+H+ S NV ITNSTIG
Sbjct: 15616 NLKVDKIRFRNAQQMHLRIQGCNNVWASNLIVTAPGHSPNTDGIHITHSQNVFITNSTIG 15437
Query: 190 TG 195
TG
Sbjct: 15436 TG 15431
Score = 48.3 bits (99), Expect(5) = 6e-028
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1 / -2
Query: 514 SSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
+S V + +V ++NI GTS++ A+ L CS+ PC G+ L DV +
Sbjct: 13274 NSAVELSNVMYQNIKGTSASEVAIKLECSKAVPCKGIHLQDVKI 13143
Score = 46.0 bits (94), Expect(5) = 6e-028
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +1 / -1
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDC+SI GS V +ITCGPG GI
Sbjct: 14958 GDDCISIVSGSKNVRATDITCGPGHGI 14878
Score = 39.1 bits (79), Expect(5) = 6e-028
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1 / -3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG + +VS+V V L TTNGVRIK+++
Sbjct: 14788 SIGSLGGGNTQAEVSNVEVNRATLIGTTNGVRIKTWQ 14678
Score = 37.3 bits (75), Expect(5) = 6e-028
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1 / -2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQK 489
A ++ F NI + V NPIIIDQ +C QK
Sbjct: 13949 ARNIKFINIVVRNVTNPIIIDQKYCDQK 13866
>gb|AC148969.4| Medicago truncatula chromosome 2 clone mth2-58p1, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 80270
Score = 49.2 bits (101), Expect(5) = 3e-026
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQK 489
AS +TF+NI ME V+NPIIIDQY+C +
Sbjct: 10353 ASKITFQNILMENVSNPIIIDQYYCDSR 10436
Score = 48.7 bits (100), Expect(5) = 3e-026
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1 / +3
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
+ + +LNS+ HI + + + + APA NTDG+H+ + V I +S I TG
Sbjct: 9015 VRNLTVLNSQKMHIAFTSCMRVVASRLKVLAPASSPNTDGIHISATKGVEIRDSLIRTG 9191
Score = 46.0 bits (94), Expect(5) = 3e-026
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1 / +3
Query: 514 SSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDV 639
+S V + +++F NI GTS+T E + CS+ PC G+ L ++
Sbjct: 10722 TSAVQVGNISFINIQGTSATEETIKFACSDASPCEGLYLENI 10847
Score = 44.6 bits (91), Expect(5) = 3e-026
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1 / +2
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGI 273
+GDDC+SI S V + NI+CGPG GI
Sbjct: 9965 SGDDCISIVRNSSRVWIRNISCGPGHGI 10048
Score = 35.0 bits (70), Expect(5) = 3e-026
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1 / +3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG+ + + +V V L NT NGVRIK+++
Sbjct: 10137 SIGSLGKSNVWEKIQNVIVDGAYLYNTDNGVRIKTWQ 10247
>gb|CX524955.1|CX524955 s13dNF13H06AT060_478544 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 542
Score = 120 bits (257), Expect = 3e-026
Identities = 47/122 (38%), Positives = 72/122 (59%)
Frame = +1 / +1
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
+ G+ + NS+ H I + + V + +P D NTDG+H+ S+NV + + IGTGD
Sbjct: 118 VKGLTIQNSQQMHFTISRCDSVRILGVKVASPGDSPNTDGIHISESTNVIVQDCKIGTGD 297
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DC+SI S + + I CGPG GIS+G LG+ V+ V + L+ TTNG+RIK+
Sbjct: 298 DCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNSTGVVTKVILDTAFLKGTTNGLRIKT 477
Query: 379 YE 384
++
Sbjct: 478 WQ 483
>gb|AC157892.2| Medicago truncatula chromosome 7 clone mte1-84h13, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 121593
Score = 58.8 bits (122), Expect(4) = 4e-026
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +1 / -3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N T+ G+K+ NS F+ D ++ ++ + ITAP NTDG+H+ +++V+I NS I
Sbjct: 35977 SNLTVKGLKVKNSPQFNFRFDACNNVHIESIYITAPKISPNTDGIHLEYANDVKIYNSVI 35798
Query: 187 GTG 195
G
Sbjct: 35797 SNG 35789
Score = 49.2 bits (101), Expect(4) = 4e-026
Identities = 24/58 (41%), Positives = 29/58 (50%)
Frame = +1 / -1
Query: 403 TASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTP 576
+ S +TF NI M V NPIIIDQY+C K C K S S +I + S P
Sbjct: 34815 SVSGVTFNNIHMISVRNPIIIDQYYCLTKDCTNKTSAVSVSNILYTNIKGTYDIKSPP 34642
Score = 49.2 bits (101), Expect(4) = 4e-026
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +1 / -2
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDCVSIG GS V + NITCGP GI
Sbjct: 35705 GDDCVSIGTGSYDVDIKNITCGPSHGI 35625
Score = 44.1 bits (90), Expect(4) = 4e-026
Identities = 15/37 (40%), Positives = 28/37 (75%)
Frame = +1 / -1
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG + + VS++TVRD +++ + NG+RIK+++
Sbjct: 34938 SIGSLGNHNTKACVSNITVRDSIIKMSDNGIRIKTWQ 34828
>gb|AC148340.3| Medicago truncatula chromosome 2 BAC clone mth2-22d10, complete
sequence
Length = 105618
Score = 49.2 bits (101), Expect(5) = 8e-026
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +1 / +3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQK 489
AS +TF+NI ME V+NPIIIDQY+C +
Sbjct: 72612 ASKITFQNILMENVSNPIIIDQYYCDSR 72695
Score = 48.7 bits (100), Expect(5) = 8e-026
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +1 / +3
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
+ + +LNS+ HI + + + + APA NTDG+H+ + V I +S I TG
Sbjct: 71274 VRNLTVLNSQKMHIAFTSCMRVVASRLKVLAPASSPNTDGIHISATKGVEIRDSLIRTG 71450
Score = 46.0 bits (94), Expect(5) = 8e-026
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1 / +3
Query: 514 SSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDV 639
+S V + +++F NI GTS+T E + CS+ PC G+ L ++
Sbjct: 72981 TSAVQVGNISFINIQGTSATEETIKFACSDASPCEGLYLENI 73106
Score = 44.6 bits (91), Expect(5) = 8e-026
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1 / +2
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGI 273
+GDDC+SI S V + NI+CGPG GI
Sbjct: 72224 SGDDCISIVRNSSRVWIRNISCGPGHGI 72307
Score = 35.0 bits (70), Expect(5) = 8e-026
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1 / +3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG+ + + +V V L NT NGVRIK+++
Sbjct: 72396 SIGSLGKSNVWEKIQNVIVDGAYLYNTDNGVRIKTWQ 72506
>gb|BQ148150.1|BQ148150 NF062C04FL1F1034 Developing flower Medicago truncatula cDNA clone
NF062C04FL 5', mRNA sequence
Length = 669
Score = 116 bits (249), Expect = 4e-025
Identities = 43/100 (43%), Positives = 65/100 (65%)
Frame = +1 / +2
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N + + LNS FH ++ +I+ +++ITAP + NTDG+H+ S + +TNS I
Sbjct: 302 NAIVQDVTSLNSMQFHFHLHGCSNISFTNLHITAPGNSPNTDGMHISSSDFITVTNSVIA 481
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEK 309
TGDDC+S+G + + ++ ITCGPG GISVG LG+ +EK
Sbjct: 482 TGDDCISVGHSTSNITISGITCGPGHGISVGSLGKRPEEK 601
>gb|AY224189.1| Medicago truncatula adenosylhomocysteinase (AHC2) gene, complete cds
Length = 68460
Score = 63.8 bits (133), Expect(5) = 4e-025
Identities = 25/60 (41%), Positives = 41/60 (68%)
Frame = +1 / +2
Query: 16 TISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
T+S + +NS HI++D+ K+ ++ +++ITAP NTDG+ + S+N+ I NSTI TG
Sbjct: 49736 TLSNLNHMNSPKNHISVDSCKNASIFNIHITAPPTSPNTDGIDISQSTNIAIMNSTIETG 49915
Score = 40.9 bits (83), Expect(5) = 4e-025
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1 / +1
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
SVG LG+ V DV V++C T+NG RIK++E
Sbjct: 50386 SVGSLGKDNSYATVEDVRVQNCTFTGTSNGGRIKTFE 50496
Score = 39.6 bits (80), Expect(5) = 4e-025
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1 / +2
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDC++I GS + + CGPG GI
Sbjct: 50201 GDDCIAINNGSSVITITGTFCGPGHGI 50281
Score = 38.6 bits (78), Expect(5) = 4e-025
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1 / +1
Query: 517 SHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYA 654
S V I DVT+ NI GTS A+ L C C+ + L +N+ A
Sbjct: 50770 SAVEISDVTYSNIRGTSVGEYAIELKCELNIGCNNIVLDHINITRA 50907
Score = 35.4 bits (71), Expect(5) = 4e-025
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1 / +1
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCP 483
A ++T+E+I + EV NP+IIDQ + P
Sbjct: 50683 ARNITYEDIILNEVKNPVIIDQAYNP 50760
>gb|CA989936.1|CA989936 EST643444 GESD Medicago truncatula cDNA clone GESD-21D12, mRNA
sequence
Length = 724
Score = 112 bits (239), Expect(2) = 2e-024
Identities = 46/121 (38%), Positives = 74/121 (61%)
Frame = +1 / +1
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
I+G+ +N HI + S+DIT+ ++I +P NTDG+ + + V I + I +GD
Sbjct: 1 INGLTHINGPGAHIAVIDSQDITISHIHINSPKKSHNTDGIDLTRTIGVNIHDIQIESGD 180
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DC+++ GS V V+N+TCGPG GISVG LG + E+ V +V++C + V+IK+
Sbjct: 181 DCIAVKGGSQFVNVSNVTCGPGHGISVGSLGGHGSEEFVQHFSVKNCTFNGADSAVKIKT 360
Query: 379 Y 381
+
Sbjct: 361 W 363
Score = 24.4 bits (47), Expect(2) = 2e-024
Identities = 8/31 (25%), Positives = 13/31 (41%)
Frame = +1 / +1
Query: 613 CSGVSLIDVNVEYAGKNNKTMAVCSNAKGTA 705
C ++L +N+ + C N GTA
Sbjct: 568 CYNITLNQINITSINRKKPASVKCKNVHGTA 660
>gb|AC166237.5| Medicago truncatula clone mth2-6a22, WORKING DRAFT SEQUENCE, 13 ordered
pieces
Length = 127651
Score = 63.8 bits (133), Expect(5) = 4e-024
Identities = 25/60 (41%), Positives = 41/60 (68%)
Frame = +1 / -2
Query: 16 TISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
T+S + +NS HI++D+ K+ ++ +++ITAP NTDG+ + S+N+ I NSTI TG
Sbjct: 115959 TLSNLNHMNSPKNHISVDSCKNASIFNIHITAPPTSPNTDGIDISQSTNIAIMNSTIETG 115780
Score = 40.9 bits (83), Expect(5) = 4e-024
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1 / -1
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
SVG LG+ V DV V++C T+NG RIK++E
Sbjct: 115309 SVGSLGKDNSYATVEDVRVQNCTFTGTSNGGRIKTFE 115199
Score = 39.6 bits (80), Expect(5) = 4e-024
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1 / -2
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDC++I GS + + CGPG GI
Sbjct: 115494 GDDCIAINNGSSVITITGTFCGPGHGI 115414
Score = 38.6 bits (78), Expect(5) = 4e-024
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1 / -1
Query: 517 SHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYA 654
S V I DVT+ NI GTS A+ L C C+ + L +N+ A
Sbjct: 114925 SAVEISDVTYSNIRGTSVGEYAIELKCELNIGCNNIVLDHINITRA 114788
Score = 35.4 bits (71), Expect(5) = 4e-024
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1 / -1
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCP 483
A ++T+E+I + EV NP+IIDQ + P
Sbjct: 115012 ARNITYEDIILNEVKNPVIIDQAYNP 114935
>gb|AC172101.1| Medicago truncatula chromosome 7 BAC clone mth2-29f3, complete sequence
Length = 88313
Score = 51.5 bits (106), Expect(4) = 3e-023
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +1 / +1
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
+ + ++NS+ HI + V +N++AP+ NTDG+H+ + + I++S + TG+
Sbjct: 63886 VRNLTVVNSQKMHIAFTRCMRVVVSRLNVSAPSSSPNTDGIHISATKGIEISHSDVKTGE 64065
Score = 47.8 bits (98), Expect(4) = 3e-023
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1 / +2
Query: 472 YFCPQKVCPGKRSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDV 639
+FC + +S V + +++F NI GTS++ E + CS+T PC G+ L ++
Sbjct: 64976 FFCKNVIMS*IVMQTSAVQVVNISFINIIGTSASEETIKFACSDTYPCEGLHLENI 65143
Score = 47.8 bits (98), Expect(4) = 3e-023
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQKV 492
AS++TF++I ME V+NPIIIDQY+C ++
Sbjct: 64613 ASNITFQDIVMENVSNPIIIDQYYCDSRL 64699
Score = 42.8 bits (87), Expect(4) = 3e-023
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1 / +2
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGI 273
+GDDC+SI S V + N +CGPG GI
Sbjct: 64235 SGDDCISIVRNSSQVWIRNFSCGPGHGI 64318
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete
sequence
Length = 128810
Score = 51.9 bits (107), Expect(4) = 2e-022
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +1 / +2
Query: 10 NGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIG 189
N + +K +NS HI+I D + +++I AP D NTDG+ + S+N+ + +S I
Sbjct: 25406 NLKLGPLKHINSPRNHISIVGCNDALISNLHIIAPKDSPNTDGIDISTSTNISVQHSIIS 25585
Query: 190 TG 195
TG
Sbjct: 25586 TG 25591
Score = 42.3 bits (86), Expect(4) = 2e-022
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1 / +1
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDC++I G++ + + +I CGPG GI
Sbjct: 25696 GDDCIAINNGTEFIYITDIQCGPGHGI 25776
Score = 38.2 bits (77), Expect(4) = 2e-022
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1 / +1
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSY 381
SVG LG+ D V ++ V + R TTNG RIK++
Sbjct: 25873 SVGSLGKDGDYSTVEEIHVSNITFRETTNGARIKTW 25980
Score = 29.5 bits (58), Expect(4) = 2e-022
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYF 477
A +T+E+I + +V NP+IIDQ +
Sbjct: 26096 ARKITYEDIIVFKVENPVIIDQQY 26167
>gb|AC144805.7| Medicago truncatula clone mth2-72a11, complete sequence
Length = 78128
Score = 63.8 bits (133), Expect(5) = 3e-022
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N ++G LNS HI+ID S + + +NITAP + NTDG+ +G SS V I +STI
Sbjct: 55683 SNLQLNGTHHLNSARNHISIDYSDHVNIFKINITAPQESPNTDGIDIGHSSYVLIQDSTI 55862
Query: 187 GTG 195
TG
Sbjct: 55863 ATG 55871
Score = 42.8 bits (87), Expect(5) = 3e-022
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1 / +3
Query: 193 GDDCVSIGPGSDGVMVNNITCGPGQGI 273
GDDC+++ G+ + + +TCGPG GI
Sbjct: 56865 GDDCIAMNNGTSNINITGVTCGPGHGI 56945
Score = 38.6 bits (78), Expect(5) = 3e-022
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1 / +2
Query: 517 SHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
S V I VT+R++ GTS++ ++ L C++ C+ + + VN+
Sbjct: 57704 SEVQISGVTYRDVIGTSNSKTSIKLNCNKNSGCTDIFMDVVNI 57832
Score = 33.1 bits (66), Expect(5) = 3e-022
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1 / +3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSY 381
SVG LG + V V V++C T NG+RIK++
Sbjct: 57039 SVGSLGENGAYEIVEQVYVKNCTFIRTENGMRIKTW 57146
Score = 30.9 bits (61), Expect(5) = 3e-022
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1 / +2
Query: 406 ASHLTFENIRMEEVANPIIIDQYF 477
A +++FE I + E NPIIIDQ +
Sbjct: 57473 ARNISFEQIILTETKNPIIIDQNY 57544
>emb|CR954187.2| Medicago truncatula chromosome 5 clone mth2-181i2, COMPLETE SEQUENCE
Length = 128654
Score = 62.5 bits (130), Expect(5) = 1e-021
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +1 / -1
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
I IK+ NS H+ D SK I V ++ I++P + NTDG+H+ + +V I +S IGTG
Sbjct: 48230 IRDIKIKNSPLCHLKFDNSKGIKVDNITISSPENSPNTDGIHLQNTQDVEIQHSNIGTG 48054
Score = 44.1 bits (90), Expect(5) = 1e-021
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +1 / -1
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGI 273
+GDDCVSI G + V++I CGPG GI
Sbjct: 47570 SGDDCVSIQTGCSNIHVHHIKCGPGHGI 47487
Score = 37.7 bits (76), Expect(5) = 1e-021
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1 / -3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG+ K VSD+ V D ++NT G RIK+++
Sbjct: 47403 SLGGLGKDKSVACVSDIIVEDISMKNTLYGARIKTWQ 47293
Score = 37.3 bits (75), Expect(5) = 1e-021
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +1 / -1
Query: 412 HLTFENIRMEEVANPIIIDQYFCPQKVC 495
+++F I++ +V P++IDQY+C +++C
Sbjct: 46715 NVSFSRIKVYDVMYPVMIDQYYCDKQIC 46632
Score = 28.1 bits (55), Expect(5) = 1e-021
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1 / -1
Query: 565 SSTPEAVSLLCSETQPCSGVSLIDVNV 645
S T + V L CS + PC+ V L D+ +
Sbjct: 46574 SYTLQPVHLACSNSIPCTDVDLTDIQL 46494
>gb|AC153001.7| Medicago truncatula clone mth2-95k24, complete sequence
Length = 100724
Score = 64.3 bits (134), Expect(3) = 3e-021
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +1 / -1
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N T+ G+++ NS FH D + + V+ + ITAPA NTDG+H+ +++V+I NS +
Sbjct: 91895 SNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSVV 91716
Query: 187 GTGDDCVSIGPGS 225
G + P S
Sbjct: 91715 SNG*SLNNQSPSS 91677
Score = 48.7 bits (100), Expect(3) = 3e-021
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / -3
Query: 403 TASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+ S +TF NI M+ V NPIIIDQ++C K C K S
Sbjct: 91092 SVSGVTFSNIHMDTVKNPIIIDQFYCLSKDCSNKTS 90985
Score = 46.0 bits (94), Expect(3) = 3e-021
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1 / -3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG + VS++TVRD V+R + NGVRIK+++
Sbjct: 91215 SIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQ 91105
>gb|AC124961.19| Medicago truncatula clone mth2-18l7, complete sequence
Length = 106560
Score = 64.3 bits (134), Expect(3) = 3e-021
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N T+ G+++ NS FH D + + V+ + ITAPA NTDG+H+ +++V+I NS +
Sbjct: 10580 SNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSVV 10759
Query: 187 GTGDDCVSIGPGS 225
G + P S
Sbjct: 10760 SNG*SLNNQSPSS 10798
Score = 48.7 bits (100), Expect(3) = 3e-021
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +1
Query: 403 TASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+ S +TF NI M+ V NPIIIDQ++C K C K S
Sbjct: 11383 SVSGVTFSNIHMDTVKNPIIIDQFYCLSKDCSNKTS 11490
Score = 46.0 bits (94), Expect(3) = 3e-021
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1 / +1
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG + VS++TVRD V+R + NGVRIK+++
Sbjct: 11260 SIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQ 11370
>gb|AC155892.1| Medicago truncatula chromosome 7 clone mth2-52p13, *** SEQUENCING IN
PROGRESS ***, 7 unordered pieces
Length = 126906
Score = 64.3 bits (134), Expect(3) = 4e-021
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +1 / +1
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
+N T+ G+++ NS FH D + + V+ + ITAPA NTDG+H+ +++V+I NS +
Sbjct: 67177 SNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSVV 67356
Query: 187 GTGDDCVSIGPGS 225
G + P S
Sbjct: 67357 SNG*SLNNQSPSS 67395
Score = 48.7 bits (100), Expect(3) = 4e-021
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +1 / +3
Query: 403 TASHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+ S +TF NI M+ V NPIIIDQ++C K C K S
Sbjct: 67980 SVSGVTFSNIHMDTVKNPIIIDQFYCLSKDCSNKTS 68087
Score = 46.0 bits (94), Expect(3) = 4e-021
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1 / +3
Query: 274 SVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
S+G LG + VS++TVRD V+R + NGVRIK+++
Sbjct: 67857 SIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQ 67967
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 575,277,254
Number of Sequences: 392609
Number of extensions: 5958232
Number of successful extensions: 32967
Number of sequences better than 1.0e-020: 39
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 31664010672
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)