TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-... 104 5e-038
gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone m... 104 1e-037
gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKIN... 100 2e-035
gb|AC130653.31| Medicago truncatula clone mth1-13b3, comple... 100 4e-035
gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula c... 137 2e-031
>gb|AC165429.2| Medicago truncatula chromosome 7 clone mth2-59p23, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 106073
Score = 104 bits (222), Expect(5) = 5e-038
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 9568 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRA 9690
Score = 62.0 bits (129), Expect(5) = 5e-038
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3 / +3
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
Y ER+VWTDK LN+KL+RKG+LTRIY PM
Sbjct: 10842 YRERIVWTDKTLNMKLMRKGILTRIYAPM 10928
Score = 38.2 bits (77), Expect(5) = 5e-038
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3 / +3
Query: 102 FMLDFDRAAFIIASTASEEEMLRW 173
F+L D AFIIASTA+EEEML+W
Sbjct: 10173 FVLMSDV*AFIIASTATEEEMLQW 10244
Score = 29.9 bits (59), Expect(5) = 5e-038
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3 / +3
Query: 264 IVQSLRESGVFTSAIA 311
I+QSLRE+GVF S IA
Sbjct: 11046 IIQSLRETGVFNSVIA 11093
Score = 29.5 bits (58), Expect(5) = 5e-038
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3 / +3
Query: 408 RSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDE 521
R D+ + + I + + D+ +A+PPLSPP D+
Sbjct: 11190 RKIDAGGASQAIARRILEVIDDSIPSAIPPLSPPYHDD 11303
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete sequence
Length = 124955
Score = 104 bits (222), Expect(5) = 1e-037
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = +3 / +2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRA
Sbjct: 110531 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRA 110653
Score = 62.0 bits (129), Expect(5) = 1e-037
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3 / +1
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
Y ER+VWTDK LN+KL+RKG+LTRIY PM
Sbjct: 111805 YRERIVWTDKTLNMKLMRKGILTRIYAPM 111891
Score = 38.2 bits (77), Expect(5) = 1e-037
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +3 / +1
Query: 102 FMLDFDRAAFIIASTASEEEMLRW 173
F+L D AFIIASTA+EEEML+W
Sbjct: 111136 FVLMSDV*AFIIASTATEEEMLQW 111207
Score = 29.9 bits (59), Expect(5) = 1e-037
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3 / +1
Query: 264 IVQSLRESGVFTSAIA 311
I+QSLRE+GVF S IA
Sbjct: 112009 IIQSLRETGVFNSVIA 112056
Score = 29.5 bits (58), Expect(5) = 1e-037
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3 / +1
Query: 408 RSTDSKASGRKILQAVDLAFSDTNVTAVPPLSPPSLDE 521
R D+ + + I + + D+ +A+PPLSPP D+
Sbjct: 112153 RKIDAGGASQAIARRILEVIDDSIPSAIPPLSPPYHDD 112266
>gb|AC135312.14| Medicago truncatula clone mth2-34c3, WORKING DRAFT SEQUENCE, 4 ordered
pieces
Length = 125828
Score = 100 bits (213), Expect(4) = 2e-035
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +3 / -1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTY KFSDLTSRRDRCGCKPTKEDVKRCFML+FDR+
Sbjct: 95192 AAVLHYTYAKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRS 95070
Score = 60.2 bits (125), Expect(4) = 2e-035
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3 / -2
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
YNE VVW DK++ +KLLRKG+LTRIYTPM
Sbjct: 94357 YNEHVVWGDKEVKIKLLRKGILTRIYTPM 94271
Score = 39.6 bits (80), Expect(4) = 2e-035
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +3 / -1
Query: 126 AFIIASTASEEEMLRWY 176
AFIIASTA+EEEML+WY
Sbjct: 94511 AFIIASTATEEEMLKWY 94461
Score = 32.2 bits (64), Expect(4) = 2e-035
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3 / -2
Query: 264 IVQSLRESGVFTSAIAA 314
I+QSLRESGVF+S IA+
Sbjct: 93802 IIQSLRESGVFSSVIAS 93752
>gb|AC130653.31| Medicago truncatula clone mth1-13b3, complete sequence
Length = 166135
Score = 100 bits (213), Expect(4) = 4e-035
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +3 / -2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRA 125
AAVLHYTY KFSDLTSRRDRCGCKPTKEDVKRCFML+FDR+
Sbjct: 47982 AAVLHYTYAKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRS 47860
Score = 60.2 bits (125), Expect(4) = 4e-035
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3 / -3
Query: 174 YNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
YNE VVW DK++ +KLLRKG+LTRIYTPM
Sbjct: 47147 YNEHVVWGDKEVKIKLLRKGILTRIYTPM 47061
Score = 39.6 bits (80), Expect(4) = 4e-035
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +3 / -2
Query: 126 AFIIASTASEEEMLRWY 176
AFIIASTA+EEEML+WY
Sbjct: 47301 AFIIASTATEEEMLKWY 47251
Score = 32.2 bits (64), Expect(4) = 4e-035
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3 / -3
Query: 264 IVQSLRESGVFTSAIAA 314
I+QSLRESGVF+S IA+
Sbjct: 46592 IIQSLRESGVFSSVIAS 46542
>gb|BI308316.1|BI308316 EST529726 GPOD Medicago truncatula cDNA clone pGPOD-2B20 5' end,
mRNA sequence
Length = 698
Score = 137 bits (294), Expect = 2e-031
Identities = 54/57 (94%), Positives = 57/57 (100%)
Frame = +3 / +3
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRW 173
AAVLHYTYTKFSDLTSRRDRCGCKPTK+DVKRCFMLDFDRAAFIIASTA+EEEML+W
Sbjct: 471 AAVLHYTYTKFSDLTSRRDRCGCKPTKDDVKRCFMLDFDRAAFIIASTATEEEMLQW 641
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 801,183,795
Number of Sequences: 392609
Number of extensions: 10945292
Number of successful extensions: 45334
Number of sequences better than 1.0e-020: 7
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 26217036560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)