TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106097.2.2
(1005 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ148181.1|BQ148181 NF062F03FL1F1031 Developing flower M... 199 6e-067
gb|BF637912.1|BF637912 NF028G04PL1F1034 Phosphate starved l... 192 2e-062
gb|BF642623.1|BF642623 NF070H08IN1F1075 Insect herbivory Me... 184 5e-060
gb|AL384586.1|AL384586 MtBC23B07F1 MtBC Medicago truncatula... 172 2e-056
gb|AC144540.6| Medicago truncatula clone mth2-19p16, comple... 110 4e-052
gb|AC144657.6| Medicago truncatula clone mth2-16a6, complet... 110 5e-052
gb|AC144404.34| Medicago truncatula clone mth2-19f21, WORKI... 110 4e-051
gb|CX517953.1|CX517953 s13dNF24C03VI022_421619 Virus-Infect... 191 4e-049
gb|CA921411.1|CA921411 EST639129 MTUS Medicago truncatula c... 183 3e-045
gb|AL376396.1|AL376396 MtBB23E09F1 MtBB Medicago truncatula... 127 3e-028
gb|AW773805.1|AW773805 EST332791 KV3 Medicago truncatula cD... 70 8e-026
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 73 1e-022
gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKIN... 73 2e-022
>gb|BQ148181.1|BQ148181 NF062F03FL1F1031 Developing flower Medicago truncatula cDNA clone
NF062F03FL 5', mRNA sequence
Length = 612
Score = 199 bits (428), Expect(3) = 6e-067
Identities = 80/143 (55%), Positives = 105/143 (73%)
Frame = +3 / +3
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+K E ++I E+ S+ YC +FK APP+KE+R+ MRIQALRCH +Y +G++
Sbjct: 168 DKKGESNEQIVSPVEQLSTDYCYAFKVRKPGMAPPLKELRKLMRIQALRCHPIYCQNGTR 347
Query: 375 LNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTA 554
LNVIPVLASRSQALRYLY+RWG ELS + V VGECGDTDYEGL+GG+HK++ILKG ++A
Sbjct: 348 LNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSSA 527
Query: 555 PNQVHANRSYSSQDVVSFDKQGI 623
+Q+H NR+Y V+ D I
Sbjct: 528 ISQLHNNRNYPLSXVMPMDSPNI 596
Score = 63.4 bits (132), Expect(3) = 6e-067
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +3 / +3
Query: 114 IDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
+ L +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 78 VTLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 182
Score = 33.1 bits (66), Expect(3) = 6e-067
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3 / +2
Query: 21 FXAFICNXXXDLXXPSSSSEDML 89
F A+ICN DL PS +SED L
Sbjct: 2 FDAYICNSGSDLYYPSLNSEDRL 70
>gb|BF637912.1|BF637912 NF028G04PL1F1034 Phosphate starved leaf Medicago truncatula cDNA
clone NF028G04PL 5', mRNA sequence
Length = 651
Score = 192 bits (414), Expect(2) = 2e-062
Identities = 77/139 (55%), Positives = 102/139 (73%)
Frame = +3 / +1
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+K E ++I E+ S+ YC +FK APP+KE+R+ MRIQALRCH +Y +G++
Sbjct: 229 DKKGESNEQIVSPVEQLSTDYCYAFKVRKPGMAPPLKELRKLMRIQALRCHPIYCQNGTR 408
Query: 375 LNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTA 554
LNVIPVLASRSQALRYLY+RWG ELS + V VGECGDTDYE L+G +HK++ILKG + A
Sbjct: 409 LNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEXLVGXLHKSVILKGVGSXA 588
Query: 555 PNQVHANRSYSSQDVVSFD 611
+Q+H NR+Y +V+ D
Sbjct: 589 ISQLHNNRNYPXSNVMPMD 645
Score = 90.9 bits (192), Expect(2) = 1e-022
Identities = 46/95 (48%), Positives = 57/95 (60%)
Frame = -3 / -2
Query: 469 TITVMFDSSTPHRIYKYLKACEREAKTGITFNLLPSWLYKTWQRSACILIVLLISFTGGA 290
T T +FD+S PHR Y+YL+A ER+A+TGITF+L+P Y WQR A ILI L SF GGA
Sbjct: 503 TNTTIFDNSXPHRTYRYLRAWERDARTGITFSLVPF*QYIGWQRRAWILINLRSSFRGGA 324
Query: 289 AAVLDPLNEMQ*VDEHSSSSINIFCPLSLFFSAAQ 185
L Q* E S+ + I LS F S +
Sbjct: 323 IPGFRTLKA*Q*SVESCSTGLTICSLLSPFLSVVE 219
Score = 68.9 bits (144), Expect(2) = 2e-062
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / +1
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 112 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 243
Score = 37.3 bits (75), Expect(2) = 1e-022
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2 / -1
Query: 194 SCPTN*CLP*TFSSPAIFNLGVIIKINHEWELSRVK 87
SCP * L * FS+P +FN+ V I++ H+ + R++
Sbjct: 219 SCPAY*SLS*PFSTPTVFNVRVEIQVTHK*AIFRIE 112
>gb|BF642623.1|BF642623 NF070H08IN1F1075 Insect herbivory Medicago truncatula cDNA clone
NF070H08IN 5', mRNA sequence
Length = 586
Score = 184 bits (397), Expect(2) = 5e-060
Identities = 75/139 (53%), Positives = 97/139 (69%)
Frame = +3 / +1
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+K E ++I E+ S+ YC +FK APP+KE+R+ MRIQALRCH +Y +G++
Sbjct: 160 DKKGESNEQIVSPVEQLSTDYCYAFKVRKPGMAPPLKELRKLMRIQALRCHPIYCQNGTR 339
Query: 375 LNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTA 554
LNVIPVLASRSQALRYLY+RWG ELS + V VGECGDT YE L+GG+HK++IL G A
Sbjct: 340 LNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTXYEXLVGGLHKSVILXGVXXXA 519
Query: 555 PNQVHANRSYSSQDVVSFD 611
Q+H N +Y V+ D
Sbjct: 520 IXQLHNNXNYPXXXVMPMD 576
Score = 90.4 bits (191), Expect(2) = 2e-022
Identities = 46/95 (48%), Positives = 57/95 (60%)
Frame = -3 / -3
Query: 469 TITVMFDSSTPHRIYKYLKACEREAKTGITFNLLPSWLYKTWQRSACILIVLLISFTGGA 290
T T +FD+S PHR Y+YL+A ER+A+TGITF+L+P Y WQR A ILI L SF GGA
Sbjct: 434 TNTTIFDNSKPHRTYRYLRAWERDARTGITFSLVPF*QYIGWQRRAWILINLRSSFRGGA 255
Query: 289 AAVLDPLNEMQ*VDEHSSSSINIFCPLSLFFSAAQ 185
L Q* E S+ + I LS F S +
Sbjct: 254 IPGFRTLKA*Q*SVESCSTGLTICSLLSPFLSVVE 150
Score = 68.9 bits (144), Expect(2) = 5e-060
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / +1
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 43 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 174
Score = 37.3 bits (75), Expect(2) = 2e-022
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2 / -2
Query: 194 SCPTN*CLP*TFSSPAIFNLGVIIKINHEWELSRVK 87
SCP * L * FS+P +FN+ V I++ H+ + R++
Sbjct: 150 SCPAY*SLS*PFSTPTVFNVRVEIQVTHK*AIFRIE 43
>gb|AL384586.1|AL384586 MtBC23B07F1 MtBC Medicago truncatula cDNA clone MtBC23B07 T3, mRNA
sequence
Length = 477
Score = 172 bits (370), Expect(2) = 2e-056
Identities = 67/111 (60%), Positives = 86/111 (77%)
Frame = +3 / +3
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+K E ++I E+ S+ YC +FK APP+KE+R+ MRIQALRCH +Y +G++
Sbjct: 144 DKKGESNEQIVSPVEQLSTDYCYAFKVRKPGMAPPLKELRKLMRIQALRCHPIYCQNGTR 323
Query: 375 LNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTI 527
LNVIPVLASRSQALRYLY+RWG ELS + V VGECGDTDYEGL+GG+HK++
Sbjct: 324 LNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSV 476
Score = 90.4 bits (191), Expect(2) = 2e-022
Identities = 46/95 (48%), Positives = 57/95 (60%)
Frame = -3 / -3
Query: 469 TITVMFDSSTPHRIYKYLKACEREAKTGITFNLLPSWLYKTWQRSACILIVLLISFTGGA 290
T T +FD+S PHR Y+YL+A ER+A+TGITF+L+P Y WQR A ILI L SF GGA
Sbjct: 418 TNTTIFDNSKPHRTYRYLRAWERDARTGITFSLVPF*QYIGWQRRAWILINLRSSFRGGA 239
Query: 289 AAVLDPLNEMQ*VDEHSSSSINIFCPLSLFFSAAQ 185
L Q* E S+ + I LS F S +
Sbjct: 238 IPGFRTLKA*Q*SVESCSTGLTICSLLSPFLSVVE 134
Score = 68.9 bits (144), Expect(2) = 2e-056
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / +3
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 27 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 158
Score = 37.3 bits (75), Expect(2) = 2e-022
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -2 / -2
Query: 194 SCPTN*CLP*TFSSPAIFNLGVIIKINHEWELSRVK 87
SCP * L * FS+P +FN+ V I++ H+ + R++
Sbjct: 134 SCPAY*SLS*PFSTPTVFNVRVEIQVTHK*AIFRIE 27
>gb|AC144540.6| Medicago truncatula clone mth2-19p16, complete sequence
Length = 78738
Score = 110 bits (235), Expect(3) = 4e-052
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +3 / -2
Query: 411 ALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSS 590
+ RYLY+RWG ELS + V VGECGDTDYEGL+GG+HK++ILKG ++A +Q+H NR+Y
Sbjct: 54215 SFRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSSAISQLHNNRNYPL 54036
Query: 591 QDVVSFDKQGIA 626
DV+ D IA
Sbjct: 54035 SDVMPMDSPNIA 54000
Score = 84.0 bits (177), Expect(3) = 4e-052
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +3 / -1
Query: 291 APPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRY 422
APP+KE+R+ MRIQALRCH +Y +G++LNVIPVLASRSQALRY
Sbjct: 54624 APPLKELRKLMRIQALRCHPIYCQNGTRLNVIPVLASRSQALRY 54493
Score = 68.9 bits (144), Expect(3) = 4e-052
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / -3
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 54997 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 54866
>gb|AC144657.6| Medicago truncatula clone mth2-16a6, complete sequence
Length = 92738
Score = 110 bits (235), Expect(3) = 5e-052
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +3 / +2
Query: 411 ALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSS 590
+ RYLY+RWG ELS + V VGECGDTDYEGL+GG+HK++ILKG ++A +Q+H NR+Y
Sbjct: 56627 SFRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSSAISQLHNNRNYPL 56806
Query: 591 QDVVSFDKQGIA 626
DV+ D IA
Sbjct: 56807 SDVMPMDSPNIA 56842
Score = 84.0 bits (177), Expect(3) = 5e-052
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +3 / +1
Query: 291 APPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRY 422
APP+KE+R+ MRIQALRCH +Y +G++LNVIPVLASRSQALRY
Sbjct: 56218 APPLKELRKLMRIQALRCHPIYCQNGTRLNVIPVLASRSQALRY 56349
Score = 68.9 bits (144), Expect(3) = 5e-052
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / +3
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 55845 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 55976
>gb|AC144404.34| Medicago truncatula clone mth2-19f21, WORKING DRAFT SEQUENCE, 14
unordered pieces
Length = 268915
Score = 110 bits (235), Expect(3) = 4e-051
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +3 / +3
Query: 411 ALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSS 590
+ RYLY+RWG ELS + V VGECGDTDYEGL+GG+HK++ILKG ++A +Q+H NR+Y
Sbjct: 131247 SFRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSSAISQLHNNRNYPL 131426
Query: 591 QDVVSFDKQGIA 626
DV+ D IA
Sbjct: 131427 SDVMPMDSPNIA 131462
Score = 84.0 bits (177), Expect(3) = 4e-051
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = +3 / +2
Query: 291 APPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRY 422
APP+KE+R+ MRIQALRCH +Y +G++LNVIPVLASRSQALRY
Sbjct: 130838 APPLKELRKLMRIQALRCHPIYCQNGTRLNVIPVLASRSQALRY 130969
Score = 68.9 bits (144), Expect(3) = 4e-051
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / +1
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 130465 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 130596
>gb|CX517953.1|CX517953 s13dNF24C03VI022_421619 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 457
Score = 191 bits (411), Expect(2) = 4e-049
Identities = 76/136 (55%), Positives = 102/136 (75%)
Frame = +3 / +3
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+K E ++I E+ S+ YC +F APP+KE+R+ MRIQALRCH +Y +G++
Sbjct: 45 DKKGESNEQIVSPVEQLSTDYCYAFGVRKPGMAPPLKELRKLMRIQALRCHPIYCQNGTR 224
Query: 375 LNVIPVLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTA 554
LNVIPVLASRSQALRYLY+RWG ELS + V VGECGDTDYEGL+GG+H+++ILKG ++A
Sbjct: 225 LNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHESVILKGVGSSA 404
Query: 555 PNQVHANRSYSSQDVV 602
++H NR+Y DV+
Sbjct: 405 VXRLHNNRNYPLSDVM 452
Score = 25.8 bits (50), Expect(2) = 4e-049
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +3
Query: 171 KTLIRWAAEKNKERGQ 218
KTL+RWAA ++G+
Sbjct: 12 KTLVRWAASTTDKKGE 59
>gb|CA921411.1|CA921411 EST639129 MTUS Medicago truncatula cDNA clone MTUS-40A5, mRNA
sequence
Length = 649
Score = 183 bits (395), Expect = 3e-045
Identities = 72/111 (64%), Positives = 91/111 (81%)
Frame = +3 / -2
Query: 294 PPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYIRWGVELSNITVIVG 473
PP+KE+R+ MRIQALRCH +Y +G++LNVIPVLASRSQALRYLY+RWG ELS + V VG
Sbjct: 642 PPLKELRKLMRIQALRCHPIYCQNGTRLNVIPVLASRSQALRYLYVRWGFELSKMVVFVG 463
Query: 474 ECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQDVVSFDKQGIA 626
ECGDTDYEGL+GG+HK++ILKG ++A +Q+H NR+Y DV+ D IA
Sbjct: 462 ECGDTDYEGLVGGLHKSVILKGVGSSAISQLHNNRNYPLSDVMPMDSPNIA 310
>gb|AL376396.1|AL376396 MtBB23E09F1 MtBB Medicago truncatula cDNA clone MtBB23E09 T3, mRNA
sequence
Length = 460
Score = 127 bits (272), Expect = 3e-028
Identities = 51/79 (64%), Positives = 63/79 (79%)
Frame = +3 / +3
Query: 390 VLASRSQALRYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVH 569
VLASRSQALRYLY+RWG ELS + V VGECGDTDYEGL+GG+HK++ILKG ++A +Q+H
Sbjct: 3 VLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLVGGLHKSVILKGVGSSAISQLH 182
Query: 570 ANRSYSSQDVVSFDKQGIA 626
NR+Y DV+ D IA
Sbjct: 183 NNRNYPLSDVMPMDSPNIA 239
>gb|AW773805.1|AW773805 EST332791 KV3 Medicago truncatula cDNA clone pKV3-16A16, mRNA
sequence
Length = 642
Score = 69.8 bits (146), Expect(3) = 8e-026
Identities = 27/61 (44%), Positives = 40/61 (65%)
Frame = +3 / +1
Query: 195 EKNKERGQKIFIEDEECSSTYCISFKGSNTAAAPPVKEIRRTMRIQALRCHVLYSHDGSK 374
+K E ++I E+ S+ YC +FK APP+KE+R+ MRIQALRCH +Y +G++
Sbjct: 460 DKKGESNEQIVSPVEQLSTDYCYAFKVRKPGMAPPLKELRKLMRIQALRCHPIYCQNGTR 639
Query: 375 L 377
L
Sbjct: 640 L 642
Score = 68.9 bits (144), Expect(3) = 8e-026
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3 / +1
Query: 87 LNPAELPFMIDLDYHSQIEYRWGGEGLRKTLIRWAAEKNKERGQ 218
LN + F+ DL +HS IEYRWGGEGLRKTL+RWAA ++G+
Sbjct: 343 LNSEDRLFVGDLYFHSHIEYRWGGEGLRKTLVRWAASTTDKKGE 474
Score = 21.7 bits (41), Expect(3) = 8e-026
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 26 CLHMQQXX*SLXSI 67
CL++QQ *SL SI
Sbjct: 300 CLYLQQRQ*SLLSI 341
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 72.5 bits (152), Expect(3) = 1e-022
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +3 / +3
Query: 417 RYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQD 596
RYL++RW + ++N+ VI+G+ GDTDYE L+ G HKTII+KG + H +D
Sbjct: 62886 RYLFVRWRLNVANMYVILGQTGDTDYEELISGTHKTIIMKGVVAKGSEEKHRGPGSYQRD 63065
Query: 597 VVSFDKQGIAS 629
V DK + +
Sbjct: 63066 DVVPDKSPLVA 63098
Score = 52.4 bits (108), Expect(3) = 1e-022
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +3 / +2
Query: 291 APPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYI 431
A V ++R+ +R++ LRCH +Y + + VIP+LASR+QALR L I
Sbjct: 61943 AKRVDDLRQKLRMRGLRCHPMYCRRSTYMQVIPLLASRAQALR*LLI 62083
Score = 38.6 bits (78), Expect(3) = 1e-022
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 117 DLDYHSQIEYRWGGEGLRKTL 179
D DY + I+YRWG EGL+KT+
Sbjct: 61350 DPDYEAHIDYRWGCEGLKKTI 61412
>gb|AC152887.20| Medicago truncatula clone mth2-91j4, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 116277
Score = 72.5 bits (152), Expect(3) = 2e-022
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +3 / -2
Query: 417 RYLYIRWGVELSNITVIVGECGDTDYEGLLGGVHKTIILKGSFNTAPNQVHANRSYSSQD 596
RYL++RW + ++N+ VI+G+ GDTDYE L+ G HKTII+KG + H +D
Sbjct: 110948 RYLFVRWRLNVANMYVILGQTGDTDYEELISGTHKTIIMKGVVAKGSEEKHRGPGSYQRD 110769
Query: 597 VVSFDKQGIAS 629
V DK + +
Sbjct: 110768 DVVPDKSPLVA 110736
Score = 52.4 bits (108), Expect(3) = 2e-022
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +3 / -1
Query: 291 APPVKEIRRTMRIQALRCHVLYSHDGSKLNVIPVLASRSQALRYLYI 431
A V ++R+ +R++ LRCH +Y + + VIP+LASR+QALR L I
Sbjct: 111891 AKRVDDLRQKLRMRGLRCHPMYCRRSTYMQVIPLLASRAQALR*LLI 111751
Score = 38.6 bits (78), Expect(3) = 2e-022
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3 / -2
Query: 117 DLDYHSQIEYRWGGEGLRKTL 179
D DY + I+YRWG EGL+KT+
Sbjct: 112484 DPDYEAHIDYRWGCEGLKKTI 112422
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 980,825,390
Number of Sequences: 392609
Number of extensions: 14620552
Number of successful extensions: 49773
Number of sequences better than 1.0e-020: 19
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 35056583244
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)