TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067516.2.1
(605 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG922569.1|CG922569 MBEIP40TR mth2 Medicago truncatula g... 204 7e-052
gb|BI309179.1|BI309179 EST530589 GPOD Medicago truncatula c... 204 7e-052
gb|AC148607.16| Medicago truncatula clone mth2-43g15, compl... 204 7e-052
gb|AC171532.4| Medicago truncatula chromosome 7 clone mth2-... 204 7e-052
>gb|CG922569.1|CG922569 MBEIP40TR mth2 Medicago truncatula genomic clone 63H8, DNA sequence
Length = 943
Score = 204 bits (441), Expect = 7e-052
Identities = 84/131 (64%), Positives = 103/131 (78%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I + V+ MREEVI+LIP+++YADPRSKLETLKDAFDVS++A+I+KVT L
Sbjct: 511 NVSIEERLSQIPEERVRIMREEVISLIPRLVYADPRSKLETLKDAFDVSVQAVIDKVTNL 690
Query: 421 RRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKN 242
R+DII G+ D++FIEENSWKY+LLD+GQ +GPH+WDPFF SAE AKN
Sbjct: 691 RKDIIEGRTDENFIEENSWKYALLDEGQHEVGPHEWDPFFSKPKDGNGESSDSSAEVAKN 870
Query: 241 SWKSEQRGQD* 209
SWK+EQR Q *
Sbjct: 871 SWKNEQRTQS* 903
Score = 160 bits (345), Expect = 1e-038
Identities = 76/127 (59%), Positives = 89/127 (70%)
Frame = +3 / -3
Query: 222 LCSLFQEFLAASADEPLESPPLSLGFEKNGSHL*GPIACCPSSNRLYFQLFSSIKSLSSW 401
LCS FQEF A SA+E L+SP SLG EK GSH *GP +CCPSSN YFQLFSS+K S
Sbjct: 890 LCSFFQEFFATSAEESLDSPFPSLGLEKKGSHS*GPTSCCPSSNNAYFQLFSSMKFSSVR 711
Query: 402 PAMISLLNFVTLLMIASMETSNASFNVSSFDLGSAYITFGIRLMTSSLICLTTSG*ILFS 581
P++IS L VTL + A ETS ASF VS+ + GSA G+RL+TSSL+ LT S I S
Sbjct: 710 PSIISFLKLVTLSITACTETSKASFKVSNLERGSA*TNLGMRLITSSLMILTRSSGI*LS 531
Query: 582 LSSMLAF 602
LSS+L F
Sbjct: 530 LSSILTF 510
>gb|BI309179.1|BI309179 EST530589 GPOD Medicago truncatula cDNA clone pGPOD-10N18 5' end,
mRNA sequence
Length = 545
Score = 204 bits (441), Expect = 7e-052
Identities = 84/131 (64%), Positives = 103/131 (78%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I + V+ MREEVI+LIP+++YADPRSKLETLKDAFDVS++A+I+KVT L
Sbjct: 97 NVSIEERLSQIPEERVRIMREEVISLIPRLVYADPRSKLETLKDAFDVSVQAVIDKVTNL 276
Query: 421 RRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKN 242
R+DII G+ D++FIEENSWKY+LLD+GQ +GPH+WDPFF SAE AKN
Sbjct: 277 RKDIIEGRTDENFIEENSWKYALLDEGQHEVGPHEWDPFFSKPKDGNGESSDSSAEVAKN 456
Query: 241 SWKSEQRGQD* 209
SWK+EQR Q *
Sbjct: 457 SWKNEQRTQS* 489
Score = 160 bits (345), Expect = 1e-038
Identities = 76/127 (59%), Positives = 89/127 (70%)
Frame = +3 / -1
Query: 222 LCSLFQEFLAASADEPLESPPLSLGFEKNGSHL*GPIACCPSSNRLYFQLFSSIKSLSSW 401
LCS FQEF A SA+E L+SP SLG EK GSH *GP +CCPSSN YFQLFSS+K S
Sbjct: 476 LCSFFQEFFATSAEESLDSPFPSLGLEKKGSHS*GPTSCCPSSNNAYFQLFSSMKFSSVR 297
Query: 402 PAMISLLNFVTLLMIASMETSNASFNVSSFDLGSAYITFGIRLMTSSLICLTTSG*ILFS 581
P++IS L VTL + A ETS ASF VS+ + GSA G+RL+TSSL+ LT S I S
Sbjct: 296 PSIISFLKLVTLSITACTETSKASFKVSNLERGSA*TNLGMRLITSSLMILTRSSGI*LS 117
Query: 582 LSSMLAF 602
LSS+L F
Sbjct: 116 LSSILTF 96
>gb|AC148607.16| Medicago truncatula clone mth2-43g15, complete sequence
Length = 148291
Score = 204 bits (441), Expect = 7e-052
Identities = 84/131 (64%), Positives = 103/131 (78%)
Frame = -2 / +1
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I + V+ MREEVI+LIP+++YADPRSKLETLKDAFDVS++A+I+KVT L
Sbjct: 21730 NVSIEERLSQIPEERVRIMREEVISLIPRLVYADPRSKLETLKDAFDVSVQAVIDKVTNL 21909
Query: 421 RRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKN 242
R+DII G+ D++FIEENSWKY+LLD+GQ +GPH+WDPFF SAE AKN
Sbjct: 21910 RKDIIEGRTDENFIEENSWKYALLDEGQHEVGPHEWDPFFSKPKDGNGESSDSSAEVAKN 22089
Query: 241 SWKSEQRGQD* 209
SWK+EQR Q *
Sbjct: 22090 SWKNEQRTQS* 22122
Score = 160 bits (345), Expect = 1e-038
Identities = 76/127 (59%), Positives = 89/127 (70%)
Frame = +3 / -3
Query: 222 LCSLFQEFLAASADEPLESPPLSLGFEKNGSHL*GPIACCPSSNRLYFQLFSSIKSLSSW 401
LCS FQEF A SA+E L+SP SLG EK GSH *GP +CCPSSN YFQLFSS+K S
Sbjct: 22109 LCSFFQEFFATSAEESLDSPFPSLGLEKKGSHS*GPTSCCPSSNNAYFQLFSSMKFSSVR 21930
Query: 402 PAMISLLNFVTLLMIASMETSNASFNVSSFDLGSAYITFGIRLMTSSLICLTTSG*ILFS 581
P++IS L VTL + A ETS ASF VS+ + GSA G+RL+TSSL+ LT S I S
Sbjct: 21929 PSIISFLKLVTLSITACTETSKASFKVSNLERGSA*TNLGMRLITSSLMILTRSSGI*LS 21750
Query: 582 LSSMLAF 602
LSS+L F
Sbjct: 21749 LSSILTF 21729
>gb|AC171532.4| Medicago truncatula chromosome 7 clone mth2-5a15, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 139550
Score = 204 bits (441), Expect = 7e-052
Identities = 84/131 (64%), Positives = 103/131 (78%)
Frame = -2 / +2
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
N SIEERL I + V+ MREEVI+LIP+++YADPRSKLETLKDAFDVS++A+I+KVT L
Sbjct: 123662 NVSIEERLSQIPEERVRIMREEVISLIPRLVYADPRSKLETLKDAFDVSVQAVIDKVTNL 123841
Query: 421 RRDIIAGQEDKDFIEENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKN 242
R+DII G+ D++FIEENSWKY+LLD+GQ +GPH+WDPFF SAE AKN
Sbjct: 123842 RKDIIEGRTDENFIEENSWKYALLDEGQHEVGPHEWDPFFSKPKDGNGESSDSSAEVAKN 124021
Query: 241 SWKSEQRGQD* 209
SWK+EQR Q *
Sbjct: 124022 SWKNEQRTQS* 124054
Score = 160 bits (345), Expect = 1e-038
Identities = 76/127 (59%), Positives = 89/127 (70%)
Frame = +3 / -3
Query: 222 LCSLFQEFLAASADEPLESPPLSLGFEKNGSHL*GPIACCPSSNRLYFQLFSSIKSLSSW 401
LCS FQEF A SA+E L+SP SLG EK GSH *GP +CCPSSN YFQLFSS+K S
Sbjct: 124041 LCSFFQEFFATSAEESLDSPFPSLGLEKKGSHS*GPTSCCPSSNNAYFQLFSSMKFSSVR 123862
Query: 402 PAMISLLNFVTLLMIASMETSNASFNVSSFDLGSAYITFGIRLMTSSLICLTTSG*ILFS 581
P++IS L VTL + A ETS ASF VS+ + GSA G+RL+TSSL+ LT S I S
Sbjct: 123861 PSIISFLKLVTLSITACTETSKASFKVSNLERGSA*TNLGMRLITSSLMILTRSSGI*LS 123682
Query: 582 LSSMLAF 602
LSS+L F
Sbjct: 123681 LSSILTF 123661
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 579,204,649
Number of Sequences: 392609
Number of extensions: 7379609
Number of successful extensions: 41892
Number of sequences better than 1.0e-020: 5
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 18712535992
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)